Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00828 and MPMX19_00829 are separated by 448 nucleotides MPMX19_00829 and MPMX19_00830 overlap by 1 nucleotides MPMX19_00830 and MPMX19_00831 are separated by 65 nucleotides
MPMX19_00828: MPMX19_00828 - hypothetical protein, at 859,775 to 860,896
_00828
MPMX19_00829: MPMX19_00829 - hypothetical protein, at 861,345 to 861,641
_00829
MPMX19_00830: MPMX19_00830 - Toxin FitB, at 861,641 to 862,072
_00830
MPMX19_00831: MPMX19_00831 - GMP synthase [glutamine-hydrolyzing], at 862,138 to 863,706
_00831
Position (kb) 861
862
863 Strain fitness (log2 ratio) -2
-1
0
1
2 at 860.903 kb on - strand at 860.979 kb on - strand at 860.979 kb on - strand at 861.019 kb on + strand at 861.019 kb on + strand at 861.019 kb on + strand at 861.019 kb on + strand at 861.019 kb on + strand at 861.020 kb on - strand at 861.020 kb on - strand at 861.020 kb on - strand at 861.042 kb on + strand at 861.043 kb on - strand at 861.082 kb on + strand at 861.082 kb on + strand at 861.083 kb on - strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.133 kb on + strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.134 kb on - strand at 861.318 kb on + strand at 861.318 kb on + strand at 861.319 kb on - strand at 861.319 kb on - strand at 861.319 kb on - strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.365 kb on + strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.366 kb on - strand at 861.452 kb on + strand, within MPMX19_00829 at 861.666 kb on + strand at 861.666 kb on + strand at 861.666 kb on + strand at 861.666 kb on + strand at 861.667 kb on - strand at 861.667 kb on - strand at 861.667 kb on - strand at 861.676 kb on + strand at 861.743 kb on + strand, within MPMX19_00830 at 861.743 kb on + strand, within MPMX19_00830 at 861.743 kb on + strand, within MPMX19_00830 at 861.743 kb on + strand, within MPMX19_00830 at 861.744 kb on - strand, within MPMX19_00830 at 861.744 kb on - strand, within MPMX19_00830 at 861.744 kb on - strand, within MPMX19_00830 at 861.744 kb on - strand, within MPMX19_00830 at 861.744 kb on - strand, within MPMX19_00830 at 861.782 kb on - strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.783 kb on + strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.784 kb on - strand, within MPMX19_00830 at 861.903 kb on + strand, within MPMX19_00830 at 861.999 kb on + strand, within MPMX19_00830 at 862.000 kb on - strand, within MPMX19_00830 at 862.127 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 860,903 - -0.6 860,979 - -0.3 860,979 - -0.5 861,019 + -0.5 861,019 + +0.0 861,019 + -1.9 861,019 + -1.1 861,019 + -0.6 861,020 - -0.3 861,020 - +0.3 861,020 - -1.7 861,042 + -1.5 861,043 - +0.4 861,082 + +0.9 861,082 + -0.3 861,083 - -0.2 861,133 + -0.3 861,133 + +0.2 861,133 + -1.6 861,133 + -0.8 861,133 + -0.1 861,133 + -0.7 861,133 + +0.6 861,133 + +1.0 861,133 + -0.2 861,133 + -0.2 861,133 + -2.2 861,133 + +0.6 861,134 - +0.1 861,134 - +0.2 861,134 - -0.7 861,134 - -0.7 861,134 - -1.1 861,134 - -0.2 861,134 - -1.3 861,134 - -1.7 861,134 - -0.6 861,134 - -0.5 861,318 + -0.7 861,318 + -1.0 861,319 - -0.6 861,319 - +1.0 861,319 - +0.5 861,365 + -0.2 861,365 + -1.2 861,365 + +2.4 861,365 + +0.6 861,365 + -0.4 861,365 + -0.6 861,365 + +0.5 861,366 - +0.4 861,366 - -1.5 861,366 - +0.0 861,366 - -1.2 861,366 - +0.4 861,366 - -2.1 861,366 - -0.2 861,452 + MPMX19_00829 0.36 +0.2 861,666 + -1.5 861,666 + -1.1 861,666 + -0.6 861,666 + +0.2 861,667 - -0.1 861,667 - +0.3 861,667 - -1.5 861,676 + -0.8 861,743 + MPMX19_00830 0.24 +0.0 861,743 + MPMX19_00830 0.24 -1.0 861,743 + MPMX19_00830 0.24 -1.6 861,743 + MPMX19_00830 0.24 -0.3 861,744 - MPMX19_00830 0.24 -1.0 861,744 - MPMX19_00830 0.24 -1.4 861,744 - MPMX19_00830 0.24 +0.3 861,744 - MPMX19_00830 0.24 -1.3 861,744 - MPMX19_00830 0.24 -0.6 861,782 - MPMX19_00830 0.33 -1.3 861,783 + MPMX19_00830 0.33 +0.0 861,783 + MPMX19_00830 0.33 -0.2 861,783 + MPMX19_00830 0.33 -0.6 861,783 + MPMX19_00830 0.33 -0.3 861,783 + MPMX19_00830 0.33 -0.8 861,783 + MPMX19_00830 0.33 -1.3 861,783 + MPMX19_00830 0.33 +0.3 861,783 + MPMX19_00830 0.33 +0.5 861,784 - MPMX19_00830 0.33 -1.0 861,784 - MPMX19_00830 0.33 +0.1 861,784 - MPMX19_00830 0.33 -1.9 861,784 - MPMX19_00830 0.33 -0.8 861,784 - MPMX19_00830 0.33 +2.6 861,784 - MPMX19_00830 0.33 +0.8 861,903 + MPMX19_00830 0.61 +0.1 861,999 + MPMX19_00830 0.83 -0.3 862,000 - MPMX19_00830 0.83 -0.7 862,127 - -0.2
Or see this region's nucleotide sequence