Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00824

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00823 and MPMX19_00824 overlap by 4 nucleotidesMPMX19_00824 and MPMX19_00825 are separated by 158 nucleotides MPMX19_00823: MPMX19_00823 - hypothetical protein, at 850,740 to 852,953 _00823 MPMX19_00824: MPMX19_00824 - 23S rRNA (guanosine-2'-O-)-methyltransferase RlmB, at 852,950 to 853,759 _00824 MPMX19_00825: MPMX19_00825 - hypothetical protein, at 853,918 to 855,000 _00825 Position (kb) 852 853 854Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 852.100 kb on + strand, within MPMX19_00823at 852.100 kb on + strand, within MPMX19_00823at 852.100 kb on + strand, within MPMX19_00823at 852.100 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.101 kb on - strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.253 kb on + strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.254 kb on - strand, within MPMX19_00823at 852.298 kb on + strand, within MPMX19_00823at 852.298 kb on + strand, within MPMX19_00823at 852.298 kb on + strand, within MPMX19_00823at 852.299 kb on - strand, within MPMX19_00823at 852.941 kb on + strandat 852.941 kb on + strandat 852.941 kb on + strandat 852.941 kb on + strandat 852.941 kb on + strandat 852.941 kb on + strandat 852.941 kb on + strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 852.942 kb on - strandat 853.278 kb on + strand, within MPMX19_00824at 853.278 kb on + strand, within MPMX19_00824at 853.278 kb on + strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.279 kb on - strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.357 kb on + strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.358 kb on - strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.524 kb on + strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.525 kb on - strand, within MPMX19_00824at 853.789 kb on + strandat 853.789 kb on + strandat 853.789 kb on + strandat 853.789 kb on + strandat 853.790 kb on - strandat 853.790 kb on - strandat 853.790 kb on - strandat 853.790 kb on - strandat 853.790 kb on - strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.793 kb on + strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.794 kb on - strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.847 kb on + strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.848 kb on - strandat 853.895 kb on - strandat 853.895 kb on - strandat 853.895 kb on - strandat 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.231 kb on + strand, within MPMX19_00825at 854.232 kb on - strand, within MPMX19_00825at 854.602 kb on + strand, within MPMX19_00825at 854.602 kb on + strand, within MPMX19_00825at 854.603 kb on - strand, within MPMX19_00825at 854.617 kb on + strand, within MPMX19_00825at 854.617 kb on + strand, within MPMX19_00825at 854.618 kb on - strand, within MPMX19_00825at 854.618 kb on - strand, within MPMX19_00825

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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852,100 + MPMX19_00823 0.61 -0.4
852,100 + MPMX19_00823 0.61 -0.8
852,100 + MPMX19_00823 0.61 -1.0
852,100 - MPMX19_00823 0.61 +0.5
852,101 - MPMX19_00823 0.61 -1.2
852,101 - MPMX19_00823 0.61 +0.5
852,101 - MPMX19_00823 0.61 -0.7
852,101 - MPMX19_00823 0.61 -1.7
852,101 - MPMX19_00823 0.61 -0.1
852,101 - MPMX19_00823 0.61 -0.3
852,101 - MPMX19_00823 0.61 -0.2
852,253 + MPMX19_00823 0.68 +0.2
852,253 + MPMX19_00823 0.68 -1.4
852,253 + MPMX19_00823 0.68 +0.0
852,253 + MPMX19_00823 0.68 +0.1
852,253 + MPMX19_00823 0.68 -1.0
852,253 + MPMX19_00823 0.68 -0.8
852,253 + MPMX19_00823 0.68 -1.1
852,253 + MPMX19_00823 0.68 -0.8
852,253 + MPMX19_00823 0.68 -1.4
852,253 + MPMX19_00823 0.68 -1.5
852,253 + MPMX19_00823 0.68 -0.3
852,253 + MPMX19_00823 0.68 -0.4
852,253 + MPMX19_00823 0.68 +0.1
852,253 + MPMX19_00823 0.68 +1.0
852,253 + MPMX19_00823 0.68 -0.1
852,253 + MPMX19_00823 0.68 -0.6
852,253 + MPMX19_00823 0.68 +0.2
852,254 - MPMX19_00823 0.68 +0.2
852,254 - MPMX19_00823 0.68 -1.0
852,254 - MPMX19_00823 0.68 -1.0
852,254 - MPMX19_00823 0.68 -1.3
852,254 - MPMX19_00823 0.68 +0.7
852,254 - MPMX19_00823 0.68 -0.6
852,254 - MPMX19_00823 0.68 +0.6
852,254 - MPMX19_00823 0.68 +1.0
852,254 - MPMX19_00823 0.68 +0.2
852,254 - MPMX19_00823 0.68 -0.3
852,254 - MPMX19_00823 0.68 -0.1
852,298 + MPMX19_00823 0.70 -1.2
852,298 + MPMX19_00823 0.70 -0.6
852,298 + MPMX19_00823 0.70 -1.5
852,299 - MPMX19_00823 0.70 -1.4
852,941 + -1.7
852,941 + -0.1
852,941 + -0.8
852,941 + +1.2
852,941 + +1.5
852,941 + -0.5
852,941 + -0.1
852,942 - +0.2
852,942 - -0.8
852,942 - +0.4
852,942 - -0.3
852,942 - -1.2
852,942 - -1.6
852,942 - -1.5
852,942 - +2.0
852,942 - +0.4
852,942 - -1.1
852,942 - -0.8
853,278 + MPMX19_00824 0.40 +0.8
853,278 + MPMX19_00824 0.40 +0.1
853,278 + MPMX19_00824 0.40 +0.4
853,279 - MPMX19_00824 0.41 +0.6
853,279 - MPMX19_00824 0.41 -0.3
853,279 - MPMX19_00824 0.41 +0.6
853,279 - MPMX19_00824 0.41 -0.2
853,279 - MPMX19_00824 0.41 +0.3
853,279 - MPMX19_00824 0.41 +0.7
853,357 + MPMX19_00824 0.50 -0.6
853,357 + MPMX19_00824 0.50 +0.0
853,357 + MPMX19_00824 0.50 +0.1
853,357 + MPMX19_00824 0.50 -0.6
853,357 + MPMX19_00824 0.50 +0.6
853,357 + MPMX19_00824 0.50 -2.5
853,357 + MPMX19_00824 0.50 +0.6
853,358 - MPMX19_00824 0.50 -0.8
853,358 - MPMX19_00824 0.50 -1.3
853,358 - MPMX19_00824 0.50 +0.9
853,358 - MPMX19_00824 0.50 +0.7
853,358 - MPMX19_00824 0.50 +0.6
853,358 - MPMX19_00824 0.50 -0.4
853,358 - MPMX19_00824 0.50 -0.6
853,358 - MPMX19_00824 0.50 -0.9
853,358 - MPMX19_00824 0.50 +0.9
853,358 - MPMX19_00824 0.50 -0.9
853,524 + MPMX19_00824 0.71 +0.7
853,524 + MPMX19_00824 0.71 +0.5
853,524 + MPMX19_00824 0.71 +0.0
853,524 + MPMX19_00824 0.71 -0.5
853,524 + MPMX19_00824 0.71 -1.2
853,524 + MPMX19_00824 0.71 +1.1
853,524 + MPMX19_00824 0.71 -0.9
853,524 + MPMX19_00824 0.71 +0.7
853,524 + MPMX19_00824 0.71 +0.0
853,525 - MPMX19_00824 0.71 -0.2
853,525 - MPMX19_00824 0.71 -1.2
853,525 - MPMX19_00824 0.71 +1.2
853,525 - MPMX19_00824 0.71 -0.7
853,525 - MPMX19_00824 0.71 +0.1
853,525 - MPMX19_00824 0.71 -0.2
853,789 + +0.4
853,789 + +0.0
853,789 + +0.3
853,789 + +0.1
853,790 - -0.2
853,790 - -1.2
853,790 - -2.8
853,790 - +1.6
853,790 - -1.8
853,793 + -1.3
853,793 + +0.0
853,793 + -1.2
853,793 + +0.3
853,793 + -1.7
853,793 + +0.1
853,793 + +0.0
853,793 + -1.7
853,793 + -1.2
853,793 + +0.8
853,793 + +1.3
853,793 + -0.2
853,793 + -0.6
853,793 + +0.2
853,793 + -1.1
853,793 + -1.5
853,793 + -0.9
853,793 + -0.9
853,793 + -0.4
853,793 + +0.3
853,793 + -1.5
853,793 + +1.3
853,793 + +0.0
853,793 + -0.2
853,793 + +0.4
853,794 - -0.5
853,794 - +0.3
853,794 - -0.5
853,794 - +0.4
853,794 - -0.1
853,794 - -1.3
853,794 - +0.2
853,794 - +0.3
853,794 - -0.8
853,794 - +1.5
853,794 - -1.0
853,794 - -0.9
853,794 - -0.3
853,794 - +0.7
853,794 - -0.8
853,794 - -1.2
853,794 - -0.3
853,794 - -1.0
853,794 - +0.8
853,794 - -1.6
853,794 - -0.2
853,794 - -0.2
853,794 - -1.0
853,794 - -0.5
853,794 - -1.0
853,794 - +1.0
853,794 - +0.5
853,794 - -1.0
853,794 - -0.4
853,847 + +0.7
853,847 + -0.6
853,847 + -1.0
853,847 + +0.3
853,847 + +0.7
853,847 + -1.3
853,847 + -0.9
853,847 + -0.2
853,847 + -1.0
853,847 + -1.3
853,847 + +0.0
853,848 - -0.6
853,848 - +0.3
853,848 - +0.0
853,848 - -1.2
853,848 - +0.2
853,848 - -1.2
853,848 - -0.2
853,895 - -0.4
853,895 - -0.9
853,895 - +0.1
854,231 + MPMX19_00825 0.29 -0.1
854,231 + MPMX19_00825 0.29 -1.3
854,231 + MPMX19_00825 0.29 +0.0
854,231 + MPMX19_00825 0.29 +2.6
854,231 + MPMX19_00825 0.29 -0.8
854,231 + MPMX19_00825 0.29 +0.8
854,231 + MPMX19_00825 0.29 +0.6
854,232 - MPMX19_00825 0.29 -0.2
854,602 + MPMX19_00825 0.63 -0.3
854,602 + MPMX19_00825 0.63 -0.6
854,603 - MPMX19_00825 0.63 -0.8
854,617 + MPMX19_00825 0.65 -1.2
854,617 + MPMX19_00825 0.65 -2.1
854,618 - MPMX19_00825 0.65 +1.2
854,618 - MPMX19_00825 0.65 -0.8

Or see this region's nucleotide sequence