Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00821

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00820 and MPMX19_00821 are separated by 17 nucleotidesMPMX19_00821 and MPMX19_00822 are separated by 76 nucleotides MPMX19_00820: MPMX19_00820 - Multicopper oxidase MmcO, at 847,283 to 848,896 _00820 MPMX19_00821: MPMX19_00821 - Protein SlyX, at 848,914 to 849,141 _00821 MPMX19_00822: MPMX19_00822 - Divalent metal cation transporter MntH, at 849,218 to 850,513 _00822 Position (kb) 848 849 850Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 848.044 kb on - strand, within MPMX19_00820at 848.044 kb on - strand, within MPMX19_00820at 848.044 kb on - strand, within MPMX19_00820at 848.102 kb on + strand, within MPMX19_00820at 848.102 kb on + strand, within MPMX19_00820at 848.102 kb on + strand, within MPMX19_00820at 848.102 kb on + strand, within MPMX19_00820at 848.102 kb on + strand, within MPMX19_00820at 848.111 kb on + strand, within MPMX19_00820at 848.111 kb on + strand, within MPMX19_00820at 848.111 kb on + strand, within MPMX19_00820at 848.111 kb on + strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.112 kb on - strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.573 kb on + strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.574 kb on - strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.586 kb on + strand, within MPMX19_00820at 848.587 kb on - strand, within MPMX19_00820at 848.587 kb on - strand, within MPMX19_00820at 848.722 kb on - strand, within MPMX19_00820at 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.880 kb on - strandat 848.918 kb on + strandat 848.918 kb on + strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.919 kb on - strandat 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.960 kb on + strand, within MPMX19_00821at 848.961 kb on - strand, within MPMX19_00821at 848.961 kb on - strand, within MPMX19_00821at 849.071 kb on + strand, within MPMX19_00821at 849.071 kb on + strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.072 kb on - strand, within MPMX19_00821at 849.141 kb on + strandat 849.141 kb on + strandat 849.141 kb on + strandat 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.894 kb on + strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822at 849.895 kb on - strand, within MPMX19_00822

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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848,044 - MPMX19_00820 0.47 -1.4
848,044 - MPMX19_00820 0.47 -0.8
848,044 - MPMX19_00820 0.47 -0.4
848,102 + MPMX19_00820 0.51 -1.5
848,102 + MPMX19_00820 0.51 -1.5
848,102 + MPMX19_00820 0.51 -0.8
848,102 + MPMX19_00820 0.51 +1.2
848,102 + MPMX19_00820 0.51 -1.3
848,111 + MPMX19_00820 0.51 -0.3
848,111 + MPMX19_00820 0.51 +0.0
848,111 + MPMX19_00820 0.51 +0.4
848,111 + MPMX19_00820 0.51 -1.1
848,112 - MPMX19_00820 0.51 -0.3
848,112 - MPMX19_00820 0.51 +0.3
848,112 - MPMX19_00820 0.51 -0.2
848,112 - MPMX19_00820 0.51 -1.6
848,112 - MPMX19_00820 0.51 +0.1
848,112 - MPMX19_00820 0.51 +0.0
848,573 + MPMX19_00820 0.80 -1.1
848,573 + MPMX19_00820 0.80 +0.3
848,573 + MPMX19_00820 0.80 -0.3
848,573 + MPMX19_00820 0.80 -0.2
848,573 + MPMX19_00820 0.80 +0.8
848,573 + MPMX19_00820 0.80 +0.7
848,573 + MPMX19_00820 0.80 +0.3
848,573 + MPMX19_00820 0.80 -3.0
848,573 + MPMX19_00820 0.80 -0.2
848,573 + MPMX19_00820 0.80 +0.2
848,573 + MPMX19_00820 0.80 +0.2
848,574 - MPMX19_00820 0.80 -0.9
848,574 - MPMX19_00820 0.80 -0.4
848,574 - MPMX19_00820 0.80 +0.6
848,574 - MPMX19_00820 0.80 +2.6
848,574 - MPMX19_00820 0.80 -1.4
848,574 - MPMX19_00820 0.80 +0.8
848,574 - MPMX19_00820 0.80 -1.9
848,574 - MPMX19_00820 0.80 -0.9
848,574 - MPMX19_00820 0.80 -1.0
848,586 + MPMX19_00820 0.81 -1.3
848,586 + MPMX19_00820 0.81 -0.7
848,586 + MPMX19_00820 0.81 +0.4
848,587 - MPMX19_00820 0.81 -0.8
848,587 - MPMX19_00820 0.81 +0.1
848,722 - MPMX19_00820 0.89 -0.4
848,880 - -1.7
848,880 - -1.5
848,880 - -1.3
848,880 - -0.6
848,880 - +0.2
848,918 + -1.0
848,918 + -0.3
848,919 - -0.4
848,919 - -0.6
848,919 - -0.1
848,919 - -1.4
848,919 - -0.7
848,919 - +0.1
848,919 - -2.7
848,919 - +0.2
848,960 + MPMX19_00821 0.20 -0.6
848,960 + MPMX19_00821 0.20 -0.3
848,960 + MPMX19_00821 0.20 +0.0
848,960 + MPMX19_00821 0.20 -0.7
848,960 + MPMX19_00821 0.20 -0.1
848,960 + MPMX19_00821 0.20 -0.5
848,961 - MPMX19_00821 0.21 +1.0
848,961 - MPMX19_00821 0.21 -1.9
849,071 + MPMX19_00821 0.69 +0.5
849,071 + MPMX19_00821 0.69 -0.9
849,072 - MPMX19_00821 0.69 -0.7
849,072 - MPMX19_00821 0.69 -2.1
849,072 - MPMX19_00821 0.69 -0.2
849,141 + -0.1
849,141 + -2.3
849,141 + -1.8
849,894 + MPMX19_00822 0.52 -1.2
849,894 + MPMX19_00822 0.52 +0.8
849,894 + MPMX19_00822 0.52 +0.6
849,894 + MPMX19_00822 0.52 -0.6
849,894 + MPMX19_00822 0.52 -0.6
849,894 + MPMX19_00822 0.52 +0.4
849,894 + MPMX19_00822 0.52 +0.3
849,894 + MPMX19_00822 0.52 -0.3
849,894 + MPMX19_00822 0.52 -0.3
849,894 + MPMX19_00822 0.52 -0.8
849,894 + MPMX19_00822 0.52 -0.6
849,894 + MPMX19_00822 0.52 -1.2
849,894 + MPMX19_00822 0.52 -0.9
849,894 + MPMX19_00822 0.52 -0.8
849,894 + MPMX19_00822 0.52 +0.5
849,894 + MPMX19_00822 0.52 +0.0
849,894 + MPMX19_00822 0.52 +0.3
849,894 + MPMX19_00822 0.52 +0.4
849,894 + MPMX19_00822 0.52 +0.8
849,895 - MPMX19_00822 0.52 +1.0
849,895 - MPMX19_00822 0.52 -0.5
849,895 - MPMX19_00822 0.52 -0.3
849,895 - MPMX19_00822 0.52 +1.0
849,895 - MPMX19_00822 0.52 -0.7
849,895 - MPMX19_00822 0.52 -0.3
849,895 - MPMX19_00822 0.52 -0.2
849,895 - MPMX19_00822 0.52 -0.1
849,895 - MPMX19_00822 0.52 -1.5
849,895 - MPMX19_00822 0.52 -1.3
849,895 - MPMX19_00822 0.52 +1.0
849,895 - MPMX19_00822 0.52 +1.5
849,895 - MPMX19_00822 0.52 -2.1
849,895 - MPMX19_00822 0.52 +0.5
849,895 - MPMX19_00822 0.52 +0.6
849,895 - MPMX19_00822 0.52 -1.0
849,895 - MPMX19_00822 0.52 -0.3
849,895 - MPMX19_00822 0.52 -0.6
849,895 - MPMX19_00822 0.52 -0.7

Or see this region's nucleotide sequence