Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00781 and MPMX19_00782 are separated by 166 nucleotides MPMX19_00782 and MPMX19_00783 are separated by 22 nucleotides MPMX19_00783 and MPMX19_00784 are separated by 19 nucleotides
MPMX19_00781: MPMX19_00781 - hypothetical protein, at 800,174 to 801,046
_00781
MPMX19_00782: MPMX19_00782 - 3-dehydroquinate dehydratase, at 801,213 to 801,662
_00782
MPMX19_00783: MPMX19_00783 - Biotin carboxyl carrier protein of acetyl-CoA carboxylase, at 801,685 to 802,134
_00783
MPMX19_00784: MPMX19_00784 - Biotin carboxylase, at 802,154 to 803,494
_00784
Position (kb) 801
802
803 Strain fitness (log2 ratio) -2
-1
0
1 at 800.699 kb on + strand, within MPMX19_00781 at 800.699 kb on + strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 800.700 kb on - strand, within MPMX19_00781 at 801.002 kb on + strand at 801.002 kb on + strand at 801.003 kb on - strand at 801.003 kb on - strand at 801.003 kb on - strand at 801.047 kb on + strand at 801.047 kb on + strand at 801.047 kb on + strand at 801.048 kb on - strand at 801.048 kb on - strand at 801.174 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 800,699 + MPMX19_00781 0.60 -1.1 800,699 + MPMX19_00781 0.60 -0.7 800,700 - MPMX19_00781 0.60 -0.3 800,700 - MPMX19_00781 0.60 +0.8 800,700 - MPMX19_00781 0.60 -1.8 800,700 - MPMX19_00781 0.60 -0.7 801,002 + -1.7 801,002 + -0.6 801,003 - -1.3 801,003 - +1.2 801,003 - -0.5 801,047 + -1.6 801,047 + +0.3 801,047 + +1.2 801,048 - -0.3 801,048 - -1.4 801,174 + -1.2
Or see this region's nucleotide sequence