Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00776 and MPMX19_00777 are separated by 381 nucleotides MPMX19_00777 and MPMX19_00778 are separated by 112 nucleotides
MPMX19_00776: MPMX19_00776 - hypothetical protein, at 793,981 to 795,315
_00776
MPMX19_00777: MPMX19_00777 - hypothetical protein, at 795,697 to 796,341
_00777
MPMX19_00778: MPMX19_00778 - hypothetical protein, at 796,454 to 797,182
_00778
Position (kb) 795
796
797 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 794.829 kb on + strand, within MPMX19_00776 at 794.829 kb on + strand, within MPMX19_00776 at 794.829 kb on + strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 794.830 kb on - strand, within MPMX19_00776 at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.386 kb on + strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.387 kb on - strand at 795.398 kb on + strand at 795.398 kb on + strand at 795.398 kb on + strand at 795.399 kb on - strand at 795.470 kb on + strand at 795.470 kb on + strand at 795.470 kb on + strand at 795.471 kb on - strand at 795.481 kb on + strand at 795.481 kb on + strand at 795.538 kb on - strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.539 kb on + strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.540 kb on - strand at 795.545 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.600 kb on + strand at 795.601 kb on - strand at 795.601 kb on - strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.609 kb on + strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.610 kb on - strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.612 kb on + strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.613 kb on - strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.661 kb on + strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.662 kb on - strand at 795.677 kb on + strand at 795.677 kb on + strand at 795.725 kb on + strand at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.955 kb on + strand, within MPMX19_00777 at 795.956 kb on - strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.973 kb on + strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 795.974 kb on - strand, within MPMX19_00777 at 796.043 kb on - strand, within MPMX19_00777 at 796.043 kb on - strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.186 kb on + strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.187 kb on - strand, within MPMX19_00777 at 796.288 kb on + strand at 796.288 kb on + strand at 796.288 kb on + strand at 796.288 kb on + strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.289 kb on - strand at 796.339 kb on + strand at 796.339 kb on + strand at 796.339 kb on + strand at 796.340 kb on - strand at 796.340 kb on - strand at 796.340 kb on - strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.369 kb on + strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.370 kb on - strand at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.926 kb on + strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.927 kb on - strand, within MPMX19_00778 at 796.947 kb on - strand, within MPMX19_00778 at 796.947 kb on - strand, within MPMX19_00778 at 796.977 kb on + strand, within MPMX19_00778 at 796.978 kb on - strand, within MPMX19_00778 at 796.978 kb on - strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.996 kb on + strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 796.997 kb on - strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.016 kb on + strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.017 kb on - strand, within MPMX19_00778 at 797.239 kb on - strand at 797.303 kb on + strand at 797.303 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 794,829 + MPMX19_00776 0.64 +0.3 794,829 + MPMX19_00776 0.64 -1.6 794,829 + MPMX19_00776 0.64 -1.7 794,830 - MPMX19_00776 0.64 -1.2 794,830 - MPMX19_00776 0.64 -0.9 794,830 - MPMX19_00776 0.64 +0.0 794,830 - MPMX19_00776 0.64 +1.4 794,830 - MPMX19_00776 0.64 -0.8 794,830 - MPMX19_00776 0.64 -1.0 795,386 + +0.0 795,386 + -1.7 795,386 + -0.8 795,386 + -1.3 795,386 + -2.1 795,386 + -2.0 795,386 + -1.4 795,387 - -2.1 795,387 - -1.1 795,387 - -2.0 795,387 - +0.8 795,398 + -1.0 795,398 + -0.7 795,398 + +0.0 795,399 - -0.1 795,470 + +0.1 795,470 + -1.4 795,470 + -1.4 795,471 - -1.3 795,481 + -1.1 795,481 + -3.3 795,538 - -0.3 795,539 + +0.9 795,539 + -0.5 795,539 + -1.0 795,539 + +0.3 795,539 + -1.1 795,539 + +0.1 795,540 - -2.5 795,540 - -1.0 795,540 - -0.8 795,540 - -1.0 795,540 - -0.3 795,540 - -1.1 795,545 + -0.6 795,600 + -0.5 795,600 + -1.3 795,600 + -1.2 795,600 + -0.5 795,600 + +0.3 795,601 - +0.9 795,601 - -1.3 795,609 + -1.4 795,609 + -0.3 795,609 + -1.0 795,609 + +0.4 795,609 + +0.0 795,609 + -0.8 795,609 + -1.4 795,609 + -0.9 795,609 + -1.1 795,609 + +0.4 795,609 + +1.0 795,609 + -0.9 795,609 + +0.2 795,609 + +0.0 795,609 + +0.3 795,610 - -1.8 795,610 - +0.0 795,610 - -0.9 795,610 - +0.4 795,610 - +0.6 795,610 - -0.3 795,610 - -2.2 795,610 - -0.6 795,610 - +0.0 795,610 - -0.3 795,610 - -0.8 795,610 - -0.2 795,610 - +1.0 795,610 - +0.0 795,610 - +0.0 795,610 - +0.1 795,610 - -0.1 795,610 - +1.0 795,610 - +0.1 795,612 + -0.6 795,612 + +0.8 795,612 + +0.4 795,612 + -2.1 795,612 + -1.3 795,612 + -2.2 795,612 + -0.8 795,613 - -0.8 795,613 - -0.4 795,613 - -0.6 795,613 - -1.0 795,613 - -0.2 795,613 - +0.4 795,613 - -0.1 795,613 - +1.0 795,661 + -0.6 795,661 + +0.6 795,661 + +0.4 795,661 + +0.4 795,661 + -2.5 795,661 + -0.7 795,661 + -0.1 795,661 + -1.6 795,661 + +0.3 795,661 + -0.3 795,661 + -1.2 795,661 + +0.4 795,661 + +0.2 795,661 + -1.2 795,661 + -0.6 795,661 + -0.8 795,662 - -0.8 795,662 - -0.8 795,662 - +0.8 795,662 - +0.0 795,662 - -0.4 795,662 - +0.0 795,662 - -1.6 795,662 - +1.0 795,662 - -1.2 795,662 - -1.9 795,662 - +0.4 795,662 - -0.4 795,662 - -1.4 795,662 - +0.8 795,662 - -0.2 795,662 - -0.2 795,662 - -0.7 795,662 - -1.2 795,677 + -0.8 795,677 + +0.3 795,725 + +0.4 795,955 + MPMX19_00777 0.40 -0.5 795,955 + MPMX19_00777 0.40 -0.5 795,955 + MPMX19_00777 0.40 -1.0 795,955 + MPMX19_00777 0.40 -1.1 795,955 + MPMX19_00777 0.40 +0.4 795,956 - MPMX19_00777 0.40 -1.6 795,973 + MPMX19_00777 0.43 -1.2 795,973 + MPMX19_00777 0.43 -1.7 795,973 + MPMX19_00777 0.43 +0.4 795,973 + MPMX19_00777 0.43 -1.2 795,973 + MPMX19_00777 0.43 -1.0 795,973 + MPMX19_00777 0.43 -0.9 795,973 + MPMX19_00777 0.43 -1.0 795,973 + MPMX19_00777 0.43 +1.0 795,974 - MPMX19_00777 0.43 -0.4 795,974 - MPMX19_00777 0.43 +0.4 795,974 - MPMX19_00777 0.43 -0.3 795,974 - MPMX19_00777 0.43 -0.3 795,974 - MPMX19_00777 0.43 -0.3 795,974 - MPMX19_00777 0.43 -1.6 796,043 - MPMX19_00777 0.54 -0.2 796,043 - MPMX19_00777 0.54 -0.9 796,186 + MPMX19_00777 0.76 -0.6 796,186 + MPMX19_00777 0.76 -2.0 796,186 + MPMX19_00777 0.76 -2.2 796,186 + MPMX19_00777 0.76 +0.1 796,186 + MPMX19_00777 0.76 -1.2 796,186 + MPMX19_00777 0.76 -0.8 796,186 + MPMX19_00777 0.76 +0.1 796,186 + MPMX19_00777 0.76 -0.5 796,186 + MPMX19_00777 0.76 -2.2 796,186 + MPMX19_00777 0.76 +0.2 796,186 + MPMX19_00777 0.76 +0.1 796,186 + MPMX19_00777 0.76 +0.2 796,186 + MPMX19_00777 0.76 -1.2 796,186 + MPMX19_00777 0.76 +0.6 796,186 + MPMX19_00777 0.76 +0.1 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 -0.3 796,186 + MPMX19_00777 0.76 +0.0 796,186 + MPMX19_00777 0.76 +1.4 796,186 + MPMX19_00777 0.76 -2.8 796,186 + MPMX19_00777 0.76 -1.2 796,186 + MPMX19_00777 0.76 -1.3 796,186 + MPMX19_00777 0.76 -1.0 796,186 + MPMX19_00777 0.76 +0.1 796,187 - MPMX19_00777 0.76 -0.9 796,187 - MPMX19_00777 0.76 -0.4 796,187 - MPMX19_00777 0.76 +0.7 796,187 - MPMX19_00777 0.76 +0.4 796,187 - MPMX19_00777 0.76 +0.3 796,187 - MPMX19_00777 0.76 -0.2 796,288 + +0.2 796,288 + -0.2 796,288 + -0.9 796,288 + +1.2 796,289 - +0.4 796,289 - -0.3 796,289 - +0.1 796,289 - -0.2 796,339 + -1.3 796,339 + +1.6 796,339 + +0.0 796,340 - +0.0 796,340 - +0.7 796,340 - -0.8 796,369 + -1.0 796,369 + -0.3 796,369 + +0.2 796,369 + -1.1 796,370 - +0.5 796,370 - -0.0 796,370 - -1.4 796,370 - -0.9 796,926 + MPMX19_00778 0.65 +0.5 796,926 + MPMX19_00778 0.65 -0.6 796,926 + MPMX19_00778 0.65 -1.9 796,926 + MPMX19_00778 0.65 -0.2 796,926 + MPMX19_00778 0.65 -0.6 796,926 + MPMX19_00778 0.65 +1.6 796,926 + MPMX19_00778 0.65 -1.0 796,926 + MPMX19_00778 0.65 -1.8 796,926 + MPMX19_00778 0.65 +0.5 796,926 + MPMX19_00778 0.65 +1.4 796,926 + MPMX19_00778 0.65 -2.1 796,926 + MPMX19_00778 0.65 -1.5 796,926 + MPMX19_00778 0.65 -1.6 796,926 + MPMX19_00778 0.65 -0.7 796,926 + MPMX19_00778 0.65 -0.1 796,926 + MPMX19_00778 0.65 -0.2 796,926 + MPMX19_00778 0.65 -1.4 796,926 + MPMX19_00778 0.65 +1.3 796,926 + MPMX19_00778 0.65 -1.6 796,926 + MPMX19_00778 0.65 -2.4 796,926 + MPMX19_00778 0.65 -0.3 796,926 + MPMX19_00778 0.65 +0.1 796,926 + MPMX19_00778 0.65 +0.4 796,926 + MPMX19_00778 0.65 -0.5 796,926 + MPMX19_00778 0.65 +0.7 796,927 - MPMX19_00778 0.65 -0.4 796,927 - MPMX19_00778 0.65 -1.2 796,927 - MPMX19_00778 0.65 -1.3 796,927 - MPMX19_00778 0.65 +0.4 796,927 - MPMX19_00778 0.65 -1.6 796,927 - MPMX19_00778 0.65 -0.7 796,927 - MPMX19_00778 0.65 -0.5 796,927 - MPMX19_00778 0.65 +0.0 796,927 - MPMX19_00778 0.65 +0.6 796,927 - MPMX19_00778 0.65 +0.3 796,927 - MPMX19_00778 0.65 +0.2 796,927 - MPMX19_00778 0.65 -0.3 796,927 - MPMX19_00778 0.65 +0.1 796,927 - MPMX19_00778 0.65 -2.3 796,927 - MPMX19_00778 0.65 -0.4 796,927 - MPMX19_00778 0.65 +0.2 796,927 - MPMX19_00778 0.65 -0.1 796,927 - MPMX19_00778 0.65 -0.2 796,947 - MPMX19_00778 0.68 -1.4 796,947 - MPMX19_00778 0.68 -0.7 796,977 + MPMX19_00778 0.72 -0.6 796,978 - MPMX19_00778 0.72 -0.2 796,978 - MPMX19_00778 0.72 +0.2 796,996 + MPMX19_00778 0.74 -1.0 796,996 + MPMX19_00778 0.74 -0.3 796,996 + MPMX19_00778 0.74 +0.6 796,996 + MPMX19_00778 0.74 +0.4 796,996 + MPMX19_00778 0.74 -0.6 796,996 + MPMX19_00778 0.74 -0.6 796,997 - MPMX19_00778 0.74 +0.4 796,997 - MPMX19_00778 0.74 +1.0 796,997 - MPMX19_00778 0.74 -0.3 796,997 - MPMX19_00778 0.74 +0.0 796,997 - MPMX19_00778 0.74 +0.8 796,997 - MPMX19_00778 0.74 -0.2 796,997 - MPMX19_00778 0.74 -1.3 796,997 - MPMX19_00778 0.74 -1.9 796,997 - MPMX19_00778 0.74 -1.3 796,997 - MPMX19_00778 0.74 -1.0 796,997 - MPMX19_00778 0.74 +0.0 796,997 - MPMX19_00778 0.74 +0.4 796,997 - MPMX19_00778 0.74 -1.0 797,016 + MPMX19_00778 0.77 +0.1 797,016 + MPMX19_00778 0.77 -0.3 797,016 + MPMX19_00778 0.77 +0.7 797,017 - MPMX19_00778 0.77 +0.6 797,017 - MPMX19_00778 0.77 -0.2 797,017 - MPMX19_00778 0.77 -1.7 797,017 - MPMX19_00778 0.77 -1.2 797,017 - MPMX19_00778 0.77 -0.4 797,239 - -1.1 797,303 + -0.6 797,303 + -1.0
Or see this region's nucleotide sequence