Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00729 and MPMX19_00730 are separated by 244 nucleotides MPMX19_00730 and MPMX19_00731 are separated by 91 nucleotides MPMX19_00731 and MPMX19_00732 are separated by 172 nucleotides MPMX19_00732 and MPMX19_00733 are separated by 35 nucleotides
MPMX19_00729: MPMX19_00729 - K(+)-insensitive pyrophosphate-energized proton pump, at 750,386 to 752,488
_00729
MPMX19_00730: MPMX19_00730 - hypothetical protein, at 752,733 to 753,191
_00730
MPMX19_00731: MPMX19_00731 - Thiamine-monophosphate kinase, at 753,283 to 754,275
_00731
MPMX19_00732: MPMX19_00732 - Transcription antitermination protein NusB, at 754,448 to 755,035
_00732
MPMX19_00733: MPMX19_00733 - 6,7-dimethyl-8-ribityllumazine synthase 1, at 755,071 to 755,535
_00733
Position (kb) 753
754
755 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.325 kb on + strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.326 kb on - strand at 752.340 kb on + strand at 752.340 kb on + strand at 752.341 kb on - strand at 752.425 kb on + strand at 752.437 kb on - strand at 752.437 kb on - strand at 752.437 kb on - strand at 752.480 kb on + strand at 752.480 kb on + strand at 752.480 kb on + strand at 752.480 kb on + strand at 752.481 kb on - strand at 752.481 kb on - strand at 752.508 kb on + strand at 752.508 kb on + strand at 752.509 kb on - strand at 752.509 kb on - strand at 752.509 kb on - strand at 752.509 kb on - strand at 752.509 kb on - strand at 752.573 kb on + strand at 752.573 kb on + strand at 752.573 kb on + strand at 752.573 kb on + strand at 752.573 kb on + strand at 752.574 kb on - strand at 752.656 kb on + strand at 752.669 kb on + strand at 752.675 kb on + strand at 752.675 kb on + strand at 752.686 kb on + strand at 752.686 kb on + strand at 752.686 kb on + strand at 752.773 kb on + strand at 752.773 kb on + strand at 752.773 kb on + strand at 752.774 kb on - strand at 752.774 kb on - strand at 752.774 kb on - strand at 752.774 kb on - strand at 752.774 kb on - strand at 752.774 kb on - strand at 752.837 kb on + strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.838 kb on - strand, within MPMX19_00730 at 752.885 kb on - strand, within MPMX19_00730 at 752.885 kb on - strand, within MPMX19_00730 at 752.885 kb on - strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.106 kb on + strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.107 kb on - strand, within MPMX19_00730 at 753.115 kb on + strand, within MPMX19_00730 at 753.115 kb on + strand, within MPMX19_00730 at 753.116 kb on - strand, within MPMX19_00730 at 753.116 kb on - strand, within MPMX19_00730 at 753.116 kb on - strand, within MPMX19_00730 at 753.204 kb on + strand at 753.204 kb on + strand at 753.204 kb on + strand at 753.204 kb on + strand at 753.204 kb on + strand at 753.204 kb on + strand at 753.205 kb on - strand at 753.205 kb on - strand at 753.256 kb on + strand at 753.256 kb on + strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 753.257 kb on - strand at 754.450 kb on - strand at 754.450 kb on - strand at 754.450 kb on - strand at 754.450 kb on - strand at 755.146 kb on - strand, within MPMX19_00733 at 755.228 kb on + strand, within MPMX19_00733 at 755.228 kb on + strand, within MPMX19_00733 at 755.229 kb on - strand, within MPMX19_00733 at 755.229 kb on - strand, within MPMX19_00733 at 755.229 kb on - strand, within MPMX19_00733
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 752,325 + -1.0 752,325 + -0.4 752,325 + -0.7 752,325 + +1.5 752,325 + -1.0 752,325 + -0.4 752,325 + -0.8 752,325 + -0.6 752,325 + +1.4 752,325 + -1.3 752,325 + +1.2 752,325 + -0.3 752,325 + +0.7 752,325 + +0.9 752,325 + +1.2 752,325 + -1.0 752,325 + -0.3 752,325 + -0.7 752,325 + +1.4 752,325 + -1.8 752,325 + -1.9 752,326 - -1.5 752,326 - -0.3 752,326 - -1.0 752,326 - +0.6 752,326 - -1.6 752,326 - -1.2 752,326 - +1.4 752,326 - -0.6 752,326 - -0.8 752,326 - -1.0 752,326 - +1.0 752,326 - -0.4 752,326 - -1.3 752,326 - -0.0 752,326 - -1.8 752,340 + -1.0 752,340 + -0.1 752,341 - -1.4 752,425 + -0.1 752,437 - +1.4 752,437 - -0.6 752,437 - +1.0 752,480 + -0.3 752,480 + +0.4 752,480 + +0.9 752,480 + -0.8 752,481 - -0.3 752,481 - -0.6 752,508 + -0.6 752,508 + -1.0 752,509 - -0.1 752,509 - -0.7 752,509 - -0.6 752,509 - -1.0 752,509 - -0.7 752,573 + +1.8 752,573 + -0.4 752,573 + -0.8 752,573 + -1.1 752,573 + -1.0 752,574 - +0.9 752,656 + -1.6 752,669 + +0.9 752,675 + +0.1 752,675 + -1.4 752,686 + -1.6 752,686 + -2.0 752,686 + +0.2 752,773 + +0.8 752,773 + -1.5 752,773 + -3.2 752,774 - -0.1 752,774 - -1.2 752,774 - +0.3 752,774 - -0.1 752,774 - -0.1 752,774 - -0.5 752,837 + MPMX19_00730 0.23 +0.2 752,838 - MPMX19_00730 0.23 +0.9 752,838 - MPMX19_00730 0.23 +1.4 752,838 - MPMX19_00730 0.23 +0.0 752,838 - MPMX19_00730 0.23 -0.8 752,838 - MPMX19_00730 0.23 +0.1 752,838 - MPMX19_00730 0.23 -2.8 752,838 - MPMX19_00730 0.23 -1.1 752,885 - MPMX19_00730 0.33 -1.1 752,885 - MPMX19_00730 0.33 -2.0 752,885 - MPMX19_00730 0.33 -0.7 753,106 + MPMX19_00730 0.81 +2.4 753,106 + MPMX19_00730 0.81 +0.0 753,106 + MPMX19_00730 0.81 +1.3 753,106 + MPMX19_00730 0.81 -0.1 753,106 + MPMX19_00730 0.81 -0.4 753,106 + MPMX19_00730 0.81 -0.8 753,107 - MPMX19_00730 0.81 -1.1 753,107 - MPMX19_00730 0.81 +0.4 753,107 - MPMX19_00730 0.81 +0.3 753,107 - MPMX19_00730 0.81 -1.0 753,107 - MPMX19_00730 0.81 -0.7 753,107 - MPMX19_00730 0.81 -2.4 753,115 + MPMX19_00730 0.83 -0.8 753,115 + MPMX19_00730 0.83 -1.4 753,116 - MPMX19_00730 0.83 -0.4 753,116 - MPMX19_00730 0.83 +1.4 753,116 - MPMX19_00730 0.83 +0.7 753,204 + +0.3 753,204 + -0.8 753,204 + -0.0 753,204 + -2.1 753,204 + -0.6 753,204 + -0.5 753,205 - -2.1 753,205 - +1.2 753,256 + -0.5 753,256 + -1.3 753,257 - -1.0 753,257 - -0.5 753,257 - +1.0 753,257 - +0.0 753,257 - +0.3 753,257 - -0.6 754,450 - +1.0 754,450 - +0.6 754,450 - +0.2 754,450 - +0.3 755,146 - MPMX19_00733 0.16 -2.0 755,228 + MPMX19_00733 0.34 +0.1 755,228 + MPMX19_00733 0.34 +0.0 755,229 - MPMX19_00733 0.34 -0.1 755,229 - MPMX19_00733 0.34 +0.2 755,229 - MPMX19_00733 0.34 -0.2
Or see this region's nucleotide sequence