Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00722 and MPMX19_00723 are separated by 168 nucleotides MPMX19_00723 and MPMX19_00724 are separated by 396 nucleotides MPMX19_00724 and MPMX19_00725 are separated by 128 nucleotides
MPMX19_00722: MPMX19_00722 - Protein YciF, at 744,905 to 745,417
_00722
MPMX19_00723: MPMX19_00723 - hypothetical protein, at 745,586 to 745,816
_00723
MPMX19_00724: MPMX19_00724 - hypothetical protein, at 746,213 to 746,740
_00724
MPMX19_00725: MPMX19_00725 - Transcriptional regulatory protein ros, at 746,869 to 747,312
_00725
Position (kb) 746
747 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.365 kb on + strand, within MPMX19_00722 at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.366 kb on - strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.534 kb on + strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.535 kb on - strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.539 kb on + strand at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.631 kb on + strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.632 kb on - strand, within MPMX19_00723 at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.811 kb on + strand at 745.812 kb on - strand at 745.812 kb on - strand at 745.863 kb on + strand at 745.917 kb on - strand at 745.997 kb on + strand at 745.998 kb on - strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.023 kb on + strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.024 kb on - strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.029 kb on + strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.030 kb on - strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.062 kb on + strand at 746.063 kb on - strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.071 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.224 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.738 kb on + strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.739 kb on - strand at 746.853 kb on + strand at 746.862 kb on + strand at 746.862 kb on + strand at 746.862 kb on + strand at 746.863 kb on - strand at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.951 kb on + strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 746.952 kb on - strand, within MPMX19_00725 at 747.023 kb on + strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.024 kb on - strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.086 kb on + strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.087 kb on - strand, within MPMX19_00725 at 747.182 kb on + strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.183 kb on - strand, within MPMX19_00725 at 747.189 kb on + strand, within MPMX19_00725 at 747.189 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.190 kb on - strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.239 kb on + strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.240 kb on - strand, within MPMX19_00725 at 747.287 kb on - strand at 747.359 kb on + strand at 747.360 kb on - strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.379 kb on + strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.380 kb on - strand at 747.381 kb on + strand at 747.381 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.402 kb on + strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.403 kb on - strand at 747.491 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.502 kb on + strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.503 kb on - strand at 747.506 kb on - strand at 747.506 kb on - strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.645 kb on + strand at 747.646 kb on - strand at 747.646 kb on - strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.734 kb on + strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.735 kb on - strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.738 kb on + strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand at 747.739 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 745,365 + MPMX19_00722 0.90 -1.5 745,365 + MPMX19_00722 0.90 +0.0 745,365 + MPMX19_00722 0.90 -0.3 745,365 + MPMX19_00722 0.90 -1.0 745,365 + MPMX19_00722 0.90 -0.8 745,365 + MPMX19_00722 0.90 +0.0 745,365 + MPMX19_00722 0.90 -0.1 745,365 + MPMX19_00722 0.90 +1.0 745,365 + MPMX19_00722 0.90 -0.8 745,366 - -1.9 745,366 - -1.4 745,366 - +1.0 745,366 - -0.4 745,366 - +1.4 745,366 - -3.0 745,366 - -2.0 745,366 - -1.2 745,366 - -2.0 745,534 + -0.9 745,534 + +0.2 745,534 + -0.8 745,534 + -0.2 745,534 + -0.4 745,534 + -1.1 745,534 + -0.1 745,535 - -0.7 745,535 - +0.7 745,535 - -0.6 745,539 + -1.2 745,539 + -2.2 745,539 + -0.4 745,631 + MPMX19_00723 0.19 +0.6 745,631 + MPMX19_00723 0.19 -1.0 745,631 + MPMX19_00723 0.19 -1.2 745,631 + MPMX19_00723 0.19 +0.3 745,631 + MPMX19_00723 0.19 -0.4 745,631 + MPMX19_00723 0.19 +0.8 745,631 + MPMX19_00723 0.19 -0.6 745,631 + MPMX19_00723 0.19 +0.2 745,631 + MPMX19_00723 0.19 -0.5 745,631 + MPMX19_00723 0.19 -0.2 745,631 + MPMX19_00723 0.19 +0.3 745,631 + MPMX19_00723 0.19 +0.0 745,631 + MPMX19_00723 0.19 +0.0 745,632 - MPMX19_00723 0.20 +1.0 745,632 - MPMX19_00723 0.20 -1.4 745,632 - MPMX19_00723 0.20 +0.5 745,632 - MPMX19_00723 0.20 +0.9 745,632 - MPMX19_00723 0.20 -1.0 745,632 - MPMX19_00723 0.20 -0.2 745,632 - MPMX19_00723 0.20 -0.1 745,632 - MPMX19_00723 0.20 -1.8 745,632 - MPMX19_00723 0.20 -2.2 745,632 - MPMX19_00723 0.20 -1.0 745,632 - MPMX19_00723 0.20 -0.1 745,632 - MPMX19_00723 0.20 +0.3 745,632 - MPMX19_00723 0.20 -1.9 745,811 + -0.3 745,811 + -1.0 745,811 + -1.7 745,811 + -1.0 745,811 + -0.4 745,812 - -1.4 745,812 - +0.6 745,863 + -0.6 745,917 - -1.4 745,997 + -1.4 745,998 - -0.8 746,023 + -1.0 746,023 + -0.6 746,023 + -0.9 746,024 - +0.2 746,024 - +0.8 746,024 - -0.2 746,024 - +0.6 746,024 - -2.2 746,024 - -0.3 746,024 - +0.5 746,029 + -1.0 746,029 + +0.5 746,029 + -0.6 746,029 + -1.1 746,029 + -0.1 746,029 + +0.2 746,029 + +0.4 746,029 + -0.8 746,029 + -1.4 746,029 + -2.0 746,029 + -0.8 746,029 + -0.8 746,029 + -0.4 746,029 + -0.6 746,029 + -1.6 746,029 + -0.9 746,029 + +0.0 746,029 + -0.2 746,029 + -0.4 746,029 + +0.0 746,029 + +0.6 746,029 + -0.6 746,029 + -1.1 746,029 + +0.2 746,029 + +0.6 746,029 + +1.3 746,029 + -1.4 746,029 + +0.0 746,029 + -0.6 746,029 + -0.1 746,029 + -1.0 746,030 - +0.7 746,030 - -2.0 746,030 - -1.4 746,030 - -0.3 746,030 - -0.9 746,030 - -0.5 746,030 - -0.7 746,030 - -0.3 746,030 - +0.4 746,030 - -0.1 746,062 + -0.9 746,062 + -1.6 746,062 + -0.8 746,062 + +0.6 746,062 + -0.9 746,062 + +0.6 746,063 - -1.0 746,071 + -0.3 746,071 + +0.8 746,071 + -0.1 746,071 + -0.1 746,071 + +0.0 746,224 + -0.6 746,224 + -1.6 746,224 + -0.6 746,738 + -0.5 746,738 + -0.3 746,738 + -0.5 746,738 + -0.6 746,739 - +0.0 746,739 - -0.6 746,739 - -0.8 746,739 - -0.7 746,739 - -0.8 746,739 - -1.4 746,739 - +1.4 746,739 - -1.3 746,853 + -1.1 746,862 + +0.7 746,862 + +2.0 746,862 + -0.6 746,863 - +0.5 746,951 + MPMX19_00725 0.18 +0.4 746,951 + MPMX19_00725 0.18 -0.3 746,951 + MPMX19_00725 0.18 -1.3 746,951 + MPMX19_00725 0.18 -0.7 746,952 - MPMX19_00725 0.19 +1.0 746,952 - MPMX19_00725 0.19 -2.1 746,952 - MPMX19_00725 0.19 +0.3 746,952 - MPMX19_00725 0.19 -0.8 747,023 + MPMX19_00725 0.35 -1.0 747,024 - MPMX19_00725 0.35 -1.3 747,024 - MPMX19_00725 0.35 -1.0 747,024 - MPMX19_00725 0.35 -0.6 747,024 - MPMX19_00725 0.35 +0.3 747,024 - MPMX19_00725 0.35 -1.1 747,086 + MPMX19_00725 0.49 +0.0 747,086 + MPMX19_00725 0.49 -0.7 747,087 - MPMX19_00725 0.49 -0.3 747,087 - MPMX19_00725 0.49 -1.6 747,087 - MPMX19_00725 0.49 +0.4 747,087 - MPMX19_00725 0.49 +0.3 747,182 + MPMX19_00725 0.70 +0.0 747,183 - MPMX19_00725 0.71 +1.4 747,183 - MPMX19_00725 0.71 -1.8 747,183 - MPMX19_00725 0.71 -0.7 747,183 - MPMX19_00725 0.71 -0.1 747,189 + MPMX19_00725 0.72 +0.9 747,189 - MPMX19_00725 0.72 +0.3 747,190 - MPMX19_00725 0.72 +0.8 747,190 - MPMX19_00725 0.72 +0.8 747,239 + MPMX19_00725 0.83 +0.4 747,239 + MPMX19_00725 0.83 -0.1 747,239 + MPMX19_00725 0.83 -1.7 747,239 + MPMX19_00725 0.83 -0.3 747,239 + MPMX19_00725 0.83 +0.4 747,239 + MPMX19_00725 0.83 -1.3 747,240 - MPMX19_00725 0.84 -0.3 747,240 - MPMX19_00725 0.84 -0.4 747,240 - MPMX19_00725 0.84 -1.0 747,240 - MPMX19_00725 0.84 -0.4 747,240 - MPMX19_00725 0.84 -0.3 747,240 - MPMX19_00725 0.84 +0.4 747,240 - MPMX19_00725 0.84 -1.1 747,240 - MPMX19_00725 0.84 +0.4 747,287 - -0.3 747,359 + -1.0 747,360 - +0.3 747,379 + +0.0 747,379 + +1.6 747,379 + -1.7 747,379 + +0.3 747,380 - -0.6 747,380 - -0.9 747,380 - +0.7 747,380 - -1.1 747,380 - -1.6 747,381 + -0.1 747,381 + +0.0 747,402 + +0.7 747,402 + +0.0 747,402 + -0.8 747,402 + -1.1 747,402 + -0.3 747,403 - -0.7 747,403 - -0.2 747,403 - -1.8 747,403 - -1.0 747,491 + -0.7 747,502 + -0.4 747,502 + -0.0 747,502 + +0.2 747,502 + -2.3 747,502 + +1.0 747,502 + +0.4 747,502 + +0.2 747,502 + -1.4 747,503 - +0.4 747,503 - -2.6 747,503 - +0.4 747,503 - -0.7 747,503 - +0.0 747,503 - +1.0 747,503 - -1.2 747,503 - -0.7 747,503 - +0.3 747,503 - -1.4 747,506 - +0.7 747,506 - +1.0 747,645 + +0.2 747,645 + -0.6 747,645 + -0.6 747,646 - +0.3 747,646 - -1.0 747,734 + +0.2 747,734 + -0.9 747,734 + -1.1 747,734 + -1.5 747,734 + +0.4 747,734 + -1.4 747,734 + -0.5 747,734 + +0.4 747,734 + +0.6 747,734 + +1.4 747,734 + -1.7 747,734 + -0.3 747,734 + -0.8 747,735 - -0.5 747,735 - -1.6 747,735 - -3.3 747,735 - -0.3 747,735 - -2.1 747,735 - -1.1 747,735 - +0.8 747,735 - +0.3 747,735 - -2.3 747,735 - +1.7 747,738 + -0.6 747,738 + +0.0 747,738 + +2.0 747,738 + -1.3 747,738 + -0.6 747,738 + -1.6 747,738 + -0.1 747,738 + -1.3 747,738 + -0.8 747,738 + -1.7 747,738 + +2.0 747,738 + -0.8 747,738 + +0.0 747,738 + -0.8 747,738 + +0.2 747,738 + -0.1 747,738 + +0.4 747,738 + +0.7 747,738 + -1.6 747,738 + -2.2 747,738 + -1.1 747,738 + +0.3 747,738 + -0.6 747,738 + +0.8 747,738 + -1.3 747,738 + -1.5 747,738 + +0.4 747,738 + -0.8 747,738 + +0.0 747,738 + -0.1 747,738 + -1.0 747,738 + -2.0 747,738 + -0.6 747,738 + -0.6 747,738 + -1.0 747,739 - -1.0 747,739 - +0.4 747,739 - -0.3 747,739 - -2.6 747,739 - -0.6 747,739 - -0.9 747,739 - +0.2 747,739 - -1.5 747,739 - +0.2 747,739 - -2.1 747,739 - -1.3 747,739 - -1.8 747,739 - -0.2 747,739 - -1.0 747,739 - +0.1 747,739 - -0.9 747,739 - -0.8 747,739 - +0.6 747,739 - -0.2 747,739 - +0.8 747,739 - -1.6 747,739 - -0.6
Or see this region's nucleotide sequence