Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00711 and MPMX19_00712 are separated by 51 nucleotides MPMX19_00712 and MPMX19_00713 are separated by 196 nucleotides MPMX19_00713 and MPMX19_00714 are separated by 87 nucleotides
MPMX19_00711: MPMX19_00711 - Chaperone protein DnaJ, at 734,060 to 735,037
_00711
MPMX19_00712: MPMX19_00712 - hypothetical protein, at 735,089 to 735,562
_00712
MPMX19_00713: MPMX19_00713 - Pyridoxine/pyridoxamine 5'-phosphate oxidase, at 735,759 to 736,391
_00713
MPMX19_00714: MPMX19_00714 - Ferrous-iron efflux pump FieF, at 736,479 to 737,414
_00714
Position (kb) 735
736 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 734.091 kb on + strand at 734.091 kb on + strand at 734.091 kb on + strand at 734.091 kb on + strand at 734.091 kb on + strand at 734.091 kb on + strand at 734.091 kb on + strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.092 kb on - strand at 734.156 kb on + strand at 734.156 kb on + strand at 734.156 kb on + strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.157 kb on - strand at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.175 kb on + strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.176 kb on - strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.580 kb on + strand, within MPMX19_00711 at 734.581 kb on - strand, within MPMX19_00711 at 734.581 kb on - strand, within MPMX19_00711 at 734.751 kb on + strand, within MPMX19_00711 at 734.751 kb on + strand, within MPMX19_00711 at 734.751 kb on + strand, within MPMX19_00711 at 734.752 kb on - strand, within MPMX19_00711 at 734.752 kb on - strand, within MPMX19_00711 at 734.752 kb on - strand, within MPMX19_00711 at 734.752 kb on - strand, within MPMX19_00711 at 734.752 kb on - strand, within MPMX19_00711 at 734.842 kb on - strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.877 kb on + strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.878 kb on - strand, within MPMX19_00711 at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.964 kb on + strand at 734.965 kb on - strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.018 kb on + strand at 735.019 kb on - strand at 735.019 kb on - strand at 735.019 kb on - strand at 735.032 kb on - strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.090 kb on + strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.091 kb on - strand at 735.115 kb on + strand at 735.115 kb on + strand at 735.115 kb on + strand at 735.116 kb on - strand at 735.145 kb on - strand, within MPMX19_00712 at 735.145 kb on - strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.198 kb on + strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.199 kb on - strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.216 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.300 kb on + strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.301 kb on - strand, within MPMX19_00712 at 735.327 kb on + strand, within MPMX19_00712 at 735.327 kb on + strand, within MPMX19_00712 at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.626 kb on + strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.627 kb on - strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.628 kb on + strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.629 kb on - strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.638 kb on + strand at 735.639 kb on - strand at 736.389 kb on + strand at 736.419 kb on - strand at 736.419 kb on - strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.429 kb on + strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.430 kb on - strand at 736.443 kb on + strand at 736.443 kb on + strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.540 kb on - strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.548 kb on + strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand at 736.549 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 734,091 + -2.1 734,091 + -2.3 734,091 + +0.3 734,091 + +0.3 734,091 + -0.4 734,091 + +0.6 734,091 + -1.3 734,092 - -0.8 734,092 - +0.8 734,092 - -1.3 734,092 - +1.0 734,092 - +0.8 734,092 - -0.4 734,092 - -0.4 734,092 - -1.5 734,092 - -1.1 734,092 - -0.8 734,092 - -0.2 734,092 - -0.3 734,092 - -0.7 734,156 + -0.4 734,156 + -0.0 734,156 + +1.2 734,157 - -1.2 734,157 - -0.3 734,157 - +0.5 734,157 - +0.0 734,157 - -1.4 734,157 - +0.3 734,157 - +0.0 734,157 - -1.3 734,175 + MPMX19_00711 0.12 -1.0 734,175 + MPMX19_00711 0.12 -1.9 734,175 + MPMX19_00711 0.12 -2.4 734,175 + MPMX19_00711 0.12 -1.4 734,175 + MPMX19_00711 0.12 -0.3 734,175 + MPMX19_00711 0.12 -2.1 734,175 + MPMX19_00711 0.12 -1.1 734,175 + MPMX19_00711 0.12 +0.5 734,175 + MPMX19_00711 0.12 +0.4 734,175 + MPMX19_00711 0.12 -0.9 734,175 + MPMX19_00711 0.12 -2.6 734,175 + MPMX19_00711 0.12 -1.2 734,175 + MPMX19_00711 0.12 -0.1 734,175 + MPMX19_00711 0.12 +0.0 734,175 + MPMX19_00711 0.12 -1.0 734,175 + MPMX19_00711 0.12 -0.5 734,175 + MPMX19_00711 0.12 -0.6 734,175 + MPMX19_00711 0.12 -0.5 734,175 + MPMX19_00711 0.12 -2.5 734,176 - MPMX19_00711 0.12 +0.6 734,176 - MPMX19_00711 0.12 -0.3 734,176 - MPMX19_00711 0.12 -0.3 734,176 - MPMX19_00711 0.12 +0.7 734,176 - MPMX19_00711 0.12 -0.8 734,176 - MPMX19_00711 0.12 -1.0 734,176 - MPMX19_00711 0.12 +0.8 734,176 - MPMX19_00711 0.12 -0.6 734,176 - MPMX19_00711 0.12 +0.2 734,176 - MPMX19_00711 0.12 -0.5 734,580 + MPMX19_00711 0.53 +0.9 734,580 + MPMX19_00711 0.53 -0.8 734,580 + MPMX19_00711 0.53 -0.4 734,580 + MPMX19_00711 0.53 +0.2 734,580 + MPMX19_00711 0.53 +1.0 734,580 + MPMX19_00711 0.53 -0.6 734,580 + MPMX19_00711 0.53 -1.4 734,581 - MPMX19_00711 0.53 +2.0 734,581 - MPMX19_00711 0.53 -0.3 734,751 + MPMX19_00711 0.71 +0.7 734,751 + MPMX19_00711 0.71 +0.8 734,751 + MPMX19_00711 0.71 -0.0 734,752 - MPMX19_00711 0.71 -0.1 734,752 - MPMX19_00711 0.71 -1.4 734,752 - MPMX19_00711 0.71 -0.7 734,752 - MPMX19_00711 0.71 -0.8 734,752 - MPMX19_00711 0.71 -0.7 734,842 - MPMX19_00711 0.80 +1.0 734,877 + MPMX19_00711 0.84 +1.0 734,877 + MPMX19_00711 0.84 +0.9 734,877 + MPMX19_00711 0.84 -1.8 734,878 - MPMX19_00711 0.84 +0.9 734,878 - MPMX19_00711 0.84 +0.0 734,878 - MPMX19_00711 0.84 -0.1 734,964 + +1.7 734,964 + +0.8 734,964 + -0.5 734,964 + -1.0 734,964 + +0.5 734,965 - -2.0 735,018 + +0.5 735,018 + +0.2 735,018 + -0.7 735,018 + +0.7 735,019 - -0.7 735,019 - -0.1 735,019 - -1.9 735,032 - -1.3 735,090 + -1.0 735,090 + -0.5 735,090 + -0.8 735,090 + -0.5 735,090 + +1.2 735,091 - +0.6 735,091 - -0.2 735,091 - -1.1 735,091 - -2.0 735,091 - +0.2 735,091 - +0.6 735,091 - +0.3 735,115 + -1.0 735,115 + -0.4 735,115 + +0.5 735,116 - -1.1 735,145 - MPMX19_00712 0.12 -1.5 735,145 - MPMX19_00712 0.12 -0.5 735,198 + MPMX19_00712 0.23 -0.8 735,198 + MPMX19_00712 0.23 -0.4 735,198 + MPMX19_00712 0.23 +0.7 735,198 + MPMX19_00712 0.23 +0.0 735,198 + MPMX19_00712 0.23 -0.5 735,198 + MPMX19_00712 0.23 -0.3 735,198 + MPMX19_00712 0.23 -0.2 735,198 + MPMX19_00712 0.23 -1.0 735,199 - MPMX19_00712 0.23 -0.5 735,199 - MPMX19_00712 0.23 -1.0 735,199 - MPMX19_00712 0.23 -0.4 735,199 - MPMX19_00712 0.23 -0.1 735,199 - MPMX19_00712 0.23 +0.0 735,199 - MPMX19_00712 0.23 -0.4 735,199 - MPMX19_00712 0.23 -1.3 735,199 - MPMX19_00712 0.23 +0.8 735,199 - MPMX19_00712 0.23 -0.4 735,199 - MPMX19_00712 0.23 -1.4 735,199 - MPMX19_00712 0.23 -0.9 735,199 - MPMX19_00712 0.23 -0.4 735,199 - MPMX19_00712 0.23 -1.5 735,216 + MPMX19_00712 0.27 -1.8 735,216 + MPMX19_00712 0.27 -1.9 735,216 + MPMX19_00712 0.27 -0.1 735,300 + MPMX19_00712 0.45 +0.8 735,300 + MPMX19_00712 0.45 +0.6 735,300 + MPMX19_00712 0.45 +1.0 735,300 + MPMX19_00712 0.45 -0.9 735,300 + MPMX19_00712 0.45 -0.7 735,301 - MPMX19_00712 0.45 -0.1 735,301 - MPMX19_00712 0.45 -1.0 735,301 - MPMX19_00712 0.45 +0.3 735,301 - MPMX19_00712 0.45 -1.0 735,301 - MPMX19_00712 0.45 +0.5 735,327 + MPMX19_00712 0.50 +0.7 735,327 + MPMX19_00712 0.50 +1.5 735,626 + +0.2 735,626 + -0.3 735,626 + -2.5 735,626 + -0.8 735,626 + +0.2 735,626 + -1.1 735,626 + -0.5 735,626 + -0.5 735,626 + -1.1 735,626 + -1.7 735,626 + +2.6 735,626 + -1.9 735,626 + -0.4 735,626 + +0.2 735,626 + -2.5 735,626 + +1.0 735,627 - +0.7 735,627 - -1.1 735,627 - +0.1 735,627 - -1.0 735,627 - +0.5 735,627 - -0.5 735,627 - -0.5 735,627 - +0.5 735,627 - -0.4 735,627 - +1.2 735,627 - +0.1 735,627 - +0.2 735,627 - -1.3 735,627 - -0.4 735,627 - -1.2 735,627 - -0.7 735,627 - +0.3 735,628 + -1.4 735,628 + -1.3 735,628 + -0.3 735,628 + -1.3 735,628 + -1.1 735,628 + -1.0 735,628 + -0.8 735,628 + +0.0 735,628 + +0.5 735,628 + -0.5 735,628 + -0.3 735,628 + -0.0 735,628 + -1.4 735,628 + +0.5 735,628 + +0.7 735,628 + -1.8 735,628 + -0.8 735,628 + +0.5 735,628 + -0.6 735,628 + -0.2 735,628 + +0.3 735,628 + +0.3 735,628 + -0.3 735,628 + -1.6 735,628 + -1.1 735,628 + +1.6 735,629 - -0.1 735,629 - -0.9 735,629 - +0.5 735,629 - -0.2 735,629 - -1.5 735,629 - -0.8 735,629 - -1.0 735,629 - +0.7 735,629 - -1.0 735,629 - +0.5 735,629 - -0.3 735,629 - -1.2 735,629 - -0.7 735,629 - +0.5 735,629 - -0.1 735,629 - -1.7 735,629 - -1.0 735,629 - +0.2 735,629 - -1.5 735,629 - -1.0 735,629 - +0.6 735,629 - -0.9 735,629 - +0.8 735,629 - -0.7 735,629 - +0.3 735,629 - -0.3 735,629 - -0.3 735,629 - -0.8 735,629 - -0.4 735,629 - -0.1 735,629 - +0.6 735,629 - -1.0 735,629 - +0.5 735,629 - -0.6 735,629 - -0.6 735,629 - -0.4 735,629 - -2.5 735,629 - +1.0 735,629 - +0.0 735,629 - +0.5 735,629 - -1.1 735,629 - -2.0 735,638 + -1.1 735,638 + -1.3 735,638 + -0.5 735,638 + -1.6 735,639 - +0.6 736,389 + -1.1 736,419 - -1.3 736,419 - -1.3 736,429 + -0.1 736,429 + +1.2 736,429 + +1.4 736,429 + +0.2 736,429 + -0.5 736,429 + -1.3 736,429 + -1.7 736,429 + -0.9 736,430 - -0.4 736,430 - -1.9 736,430 - +0.8 736,430 - -0.1 736,443 + -0.1 736,443 + +0.2 736,540 - +0.6 736,540 - -0.6 736,540 - -1.3 736,548 + -0.4 736,548 + -0.4 736,548 + +0.9 736,548 + -0.8 736,548 + -0.8 736,548 + -0.2 736,548 + +0.1 736,548 + -1.0 736,548 + +0.0 736,548 + +0.2 736,548 + -1.5 736,548 + -0.8 736,548 + -0.6 736,548 + -1.1 736,548 + -0.5 736,548 + -1.3 736,548 + +0.7 736,548 + -2.2 736,548 + +0.5 736,548 + -1.8 736,548 + -1.0 736,548 + -0.0 736,548 + +0.2 736,548 + -1.2 736,548 + -0.8 736,549 - 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Or see this region's nucleotide sequence