Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00665 and MPMX19_00666 are separated by 10 nucleotides MPMX19_00666 and MPMX19_00667 are separated by 324 nucleotides MPMX19_00667 and MPMX19_00668 are separated by 108 nucleotides MPMX19_00668 and MPMX19_00669 are separated by 417 nucleotides MPMX19_00669 and MPMX19_00670 are separated by 54 nucleotides
MPMX19_00665: MPMX19_00665 - hypothetical protein, at 687,989 to 688,423
_00665
MPMX19_00666: MPMX19_00666 - hypothetical protein, at 688,434 to 688,844
_00666
MPMX19_00667: MPMX19_00667 - Single-stranded-DNA-specific exonuclease RecJ, at 689,169 to 690,965
_00667
MPMX19_00668: MPMX19_00668 - tRNA-Glu, at 691,074 to 691,149
_00668
MPMX19_00669: MPMX19_00669 - hypothetical protein, at 691,567 to 691,851
_00669
MPMX19_00670: MPMX19_00670 - tRNA-dihydrouridine(20/20a) synthase, at 691,906 to 692,931
_00670
Position (kb) 689
690
691 Strain fitness (log2 ratio) -2
-1
0
1
2 at 688.179 kb on - strand, within MPMX19_00665 at 688.237 kb on - strand, within MPMX19_00665 at 688.237 kb on - strand, within MPMX19_00665 at 688.426 kb on + strand at 688.427 kb on - strand at 688.427 kb on - strand at 688.445 kb on - strand at 688.538 kb on + strand, within MPMX19_00666 at 688.540 kb on + strand, within MPMX19_00666 at 688.541 kb on - strand, within MPMX19_00666 at 688.541 kb on - strand, within MPMX19_00666 at 688.541 kb on - strand, within MPMX19_00666 at 688.541 kb on - strand, within MPMX19_00666 at 688.579 kb on + strand, within MPMX19_00666 at 688.580 kb on - strand, within MPMX19_00666 at 688.659 kb on + strand, within MPMX19_00666 at 688.659 kb on + strand, within MPMX19_00666 at 688.660 kb on - strand, within MPMX19_00666 at 688.660 kb on - strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.762 kb on + strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.763 kb on - strand, within MPMX19_00666 at 688.766 kb on + strand, within MPMX19_00666 at 688.766 kb on + strand, within MPMX19_00666 at 688.766 kb on + strand, within MPMX19_00666 at 688.766 kb on + strand, within MPMX19_00666 at 688.766 kb on + strand, within MPMX19_00666 at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.818 kb on - strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.819 kb on + strand at 688.820 kb on - strand at 688.820 kb on - strand at 688.820 kb on - strand at 688.820 kb on - strand at 688.838 kb on + strand at 688.838 kb on + strand at 688.839 kb on - strand at 688.839 kb on - strand at 688.848 kb on + strand at 688.898 kb on + strand at 688.898 kb on - strand at 688.909 kb on + strand at 688.909 kb on + strand at 688.911 kb on + strand at 688.920 kb on - strand at 688.944 kb on + strand at 688.944 kb on + strand at 688.945 kb on - strand at 688.946 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 689.014 kb on + strand at 689.014 kb on + strand at 689.014 kb on + strand at 689.014 kb on + strand at 689.014 kb on + strand at 689.015 kb on - strand at 689.015 kb on - strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.126 kb on + strand at 689.127 kb on - strand at 689.127 kb on - strand at 689.127 kb on - strand at 689.127 kb on - strand at 689.127 kb on - strand at 690.983 kb on + strand at 691.004 kb on - strand at 691.168 kb on + strand at 691.168 kb on + strand at 691.168 kb on + strand at 691.168 kb on + strand at 691.168 kb on + strand at 691.287 kb on + strand at 691.333 kb on + strand at 691.334 kb on - strand at 691.334 kb on - strand at 691.366 kb on + strand at 691.366 kb on + strand at 691.423 kb on + strand at 691.432 kb on + strand at 691.432 kb on + strand at 691.432 kb on + strand at 691.432 kb on + strand at 691.432 kb on + strand at 691.433 kb on - strand at 691.433 kb on - strand at 691.433 kb on - strand at 691.433 kb on - strand at 691.537 kb on + strand at 691.537 kb on + strand at 691.537 kb on + strand at 691.537 kb on + strand at 691.537 kb on + strand at 691.537 kb on + strand at 691.538 kb on - strand at 691.538 kb on - strand at 691.538 kb on - strand at 691.538 kb on - strand at 691.636 kb on + strand, within MPMX19_00669 at 691.636 kb on + strand, within MPMX19_00669 at 691.636 kb on + strand, within MPMX19_00669 at 691.636 kb on + strand, within MPMX19_00669 at 691.636 kb on + strand, within MPMX19_00669 at 691.637 kb on - strand, within MPMX19_00669 at 691.637 kb on - strand, within MPMX19_00669 at 691.637 kb on - strand, within MPMX19_00669 at 691.637 kb on - strand, within MPMX19_00669 at 691.637 kb on - strand, within MPMX19_00669 at 691.731 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.759 kb on + strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.760 kb on - strand, within MPMX19_00669 at 691.869 kb on - strand at 691.869 kb on - strand at 691.869 kb on - strand at 691.889 kb on + strand at 691.889 kb on + strand at 691.889 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 688,179 - MPMX19_00665 0.44 -0.4 688,237 - MPMX19_00665 0.57 -0.3 688,237 - MPMX19_00665 0.57 -0.3 688,426 + -0.1 688,427 - -0.3 688,427 - -1.0 688,445 - -2.4 688,538 + MPMX19_00666 0.25 -1.9 688,540 + MPMX19_00666 0.26 -1.4 688,541 - MPMX19_00666 0.26 -0.6 688,541 - MPMX19_00666 0.26 -0.3 688,541 - MPMX19_00666 0.26 -0.1 688,541 - MPMX19_00666 0.26 +0.2 688,579 + MPMX19_00666 0.35 +0.6 688,580 - MPMX19_00666 0.36 +0.4 688,659 + MPMX19_00666 0.55 +1.3 688,659 + MPMX19_00666 0.55 -1.0 688,660 - MPMX19_00666 0.55 -0.2 688,660 - MPMX19_00666 0.55 -1.3 688,762 + MPMX19_00666 0.80 +0.7 688,762 + MPMX19_00666 0.80 -0.3 688,762 + MPMX19_00666 0.80 -0.4 688,762 + MPMX19_00666 0.80 +1.4 688,762 + MPMX19_00666 0.80 -0.3 688,762 + MPMX19_00666 0.80 -0.6 688,762 + MPMX19_00666 0.80 +2.0 688,762 + MPMX19_00666 0.80 +1.5 688,762 + MPMX19_00666 0.80 -1.8 688,762 + MPMX19_00666 0.80 -1.1 688,762 + MPMX19_00666 0.80 -1.3 688,762 + MPMX19_00666 0.80 -1.6 688,762 + MPMX19_00666 0.80 -1.7 688,762 + MPMX19_00666 0.80 -0.1 688,762 + MPMX19_00666 0.80 -2.0 688,763 - MPMX19_00666 0.80 -1.4 688,763 - MPMX19_00666 0.80 +1.6 688,763 - MPMX19_00666 0.80 +0.4 688,763 - MPMX19_00666 0.80 +2.0 688,763 - MPMX19_00666 0.80 -1.0 688,763 - MPMX19_00666 0.80 +0.4 688,763 - MPMX19_00666 0.80 +0.2 688,763 - MPMX19_00666 0.80 -0.1 688,766 + MPMX19_00666 0.81 -0.5 688,766 + MPMX19_00666 0.81 -0.3 688,766 + MPMX19_00666 0.81 -0.3 688,766 + MPMX19_00666 0.81 +0.0 688,766 + MPMX19_00666 0.81 -2.3 688,817 + -0.1 688,817 + +0.4 688,818 - +1.6 688,818 - -1.2 688,819 + +0.8 688,819 + +0.3 688,819 + -0.6 688,819 + +0.0 688,819 + +0.0 688,819 + -0.9 688,819 + +0.0 688,820 - +0.8 688,820 - -1.3 688,820 - +0.0 688,820 - +0.0 688,838 + -0.6 688,838 + +0.6 688,839 - -1.0 688,839 - -0.1 688,848 + -0.8 688,898 + +0.3 688,898 - -2.0 688,909 + +1.0 688,909 + +2.0 688,911 + +0.0 688,920 - -1.4 688,944 + +0.0 688,944 + -0.8 688,945 - -0.6 688,946 + -0.6 688,948 + +1.1 688,949 - -0.8 689,014 + +0.0 689,014 + -0.6 689,014 + +1.4 689,014 + -1.7 689,014 + +0.3 689,015 - -0.3 689,015 - +0.3 689,126 + -0.8 689,126 + -0.8 689,126 + -1.1 689,126 + -0.6 689,126 + -1.4 689,126 + -0.2 689,126 + -0.7 689,127 - -0.8 689,127 - +0.6 689,127 - -1.2 689,127 - -1.0 689,127 - -0.6 690,983 + -0.4 691,004 - -1.3 691,168 + +1.0 691,168 + -0.4 691,168 + -0.6 691,168 + -1.1 691,168 + -0.8 691,287 + -0.2 691,333 + +1.0 691,334 - -0.4 691,334 - +0.5 691,366 + -1.3 691,366 + +0.4 691,423 + +0.4 691,432 + -0.1 691,432 + +0.1 691,432 + -0.1 691,432 + +0.2 691,432 + -1.0 691,433 - -0.6 691,433 - -1.3 691,433 - +1.0 691,433 - -2.1 691,537 + -0.6 691,537 + +0.2 691,537 + -0.1 691,537 + +1.3 691,537 + -1.0 691,537 + +0.8 691,538 - -1.1 691,538 - -0.8 691,538 - -0.9 691,538 - -1.6 691,636 + MPMX19_00669 0.24 -0.3 691,636 + MPMX19_00669 0.24 -0.1 691,636 + MPMX19_00669 0.24 +0.7 691,636 + MPMX19_00669 0.24 +1.4 691,636 + MPMX19_00669 0.24 -1.6 691,637 - MPMX19_00669 0.25 -0.7 691,637 - MPMX19_00669 0.25 -1.3 691,637 - MPMX19_00669 0.25 +0.4 691,637 - MPMX19_00669 0.25 -1.2 691,637 - MPMX19_00669 0.25 -1.0 691,731 + MPMX19_00669 0.58 +0.6 691,759 + MPMX19_00669 0.67 -0.2 691,759 + MPMX19_00669 0.67 -0.9 691,759 + MPMX19_00669 0.67 -0.8 691,759 + MPMX19_00669 0.67 +0.4 691,759 + MPMX19_00669 0.67 +0.6 691,759 + MPMX19_00669 0.67 -1.8 691,759 + MPMX19_00669 0.67 -0.4 691,759 + MPMX19_00669 0.67 -0.8 691,759 + MPMX19_00669 0.67 +1.0 691,759 + MPMX19_00669 0.67 +0.2 691,759 + MPMX19_00669 0.67 -1.1 691,759 + MPMX19_00669 0.67 -0.1 691,759 + MPMX19_00669 0.67 -0.1 691,760 - MPMX19_00669 0.68 -0.6 691,760 - MPMX19_00669 0.68 -0.0 691,760 - MPMX19_00669 0.68 +0.4 691,760 - MPMX19_00669 0.68 +0.4 691,760 - MPMX19_00669 0.68 -0.1 691,760 - MPMX19_00669 0.68 +2.0 691,760 - MPMX19_00669 0.68 +0.7 691,760 - MPMX19_00669 0.68 +0.7 691,760 - MPMX19_00669 0.68 -0.3 691,760 - MPMX19_00669 0.68 -0.7 691,760 - MPMX19_00669 0.68 +1.0 691,760 - MPMX19_00669 0.68 +1.0 691,760 - MPMX19_00669 0.68 +1.0 691,760 - MPMX19_00669 0.68 +0.1 691,760 - MPMX19_00669 0.68 -0.4 691,869 - +0.2 691,869 - -0.5 691,869 - -0.6 691,889 + -2.2 691,889 + -1.0 691,889 + -2.1
Or see this region's nucleotide sequence