Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00606 and MPMX19_00607 are separated by 71 nucleotides MPMX19_00607 and MPMX19_00608 are separated by 105 nucleotides MPMX19_00608 and MPMX19_00609 are separated by 526 nucleotides
MPMX19_00606: MPMX19_00606 - 3-isopropylmalate dehydratase small subunit 1, at 620,365 to 620,976
_00606
MPMX19_00607: MPMX19_00607 - 3-isopropylmalate dehydrogenase, at 621,048 to 622,163
_00607
MPMX19_00608: MPMX19_00608 - hypothetical protein, at 622,269 to 622,559
_00608
MPMX19_00609: MPMX19_00609 - Chemotaxis protein CheY, at 623,086 to 623,481
_00609
Position (kb) 621
622
623 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 620.107 kb on - strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.214 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.306 kb on + strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.307 kb on - strand at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.506 kb on + strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.507 kb on - strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.686 kb on + strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.687 kb on - strand, within MPMX19_00606 at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.932 kb on + strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 620.933 kb on - strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.059 kb on + strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.060 kb on - strand at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.306 kb on + strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.307 kb on - strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.477 kb on + strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.478 kb on - strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.546 kb on + strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.547 kb on - strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.723 kb on + strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.724 kb on - strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.903 kb on + strand, within MPMX19_00607 at 621.904 kb on - strand, within MPMX19_00607 at 621.904 kb on - strand, within MPMX19_00607 at 622.245 kb on + strand at 622.245 kb on + strand at 622.246 kb on - strand at 622.246 kb on - strand at 622.461 kb on + strand, within MPMX19_00608 at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.535 kb on + strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.536 kb on - strand at 622.628 kb on + strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.629 kb on - strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.630 kb on + strand at 622.644 kb on - strand at 622.780 kb on - strand at 622.780 kb on - strand at 622.839 kb on + strand at 622.840 kb on - strand at 622.859 kb on - strand at 622.861 kb on - strand at 622.861 kb on - strand at 622.956 kb on + strand at 622.995 kb on + strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.996 kb on - strand at 622.997 kb on + strand at 622.998 kb on - strand at 622.998 kb on - strand at 623.000 kb on + strand at 623.000 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 620,107 - -0.8 620,214 + -0.8 620,214 + +0.0 620,214 + -0.5 620,214 + -0.7 620,306 + +1.0 620,306 + +0.5 620,306 + -0.5 620,306 + -1.3 620,306 + -1.5 620,306 + -1.6 620,306 + -0.2 620,306 + +0.7 620,306 + -0.4 620,307 - -1.2 620,307 - -1.4 620,307 - +0.2 620,307 - +0.2 620,307 - -1.5 620,307 - -1.7 620,307 - -0.5 620,307 - -1.5 620,307 - -1.1 620,506 + MPMX19_00606 0.23 -2.1 620,506 + MPMX19_00606 0.23 -0.1 620,506 + MPMX19_00606 0.23 -1.0 620,506 + MPMX19_00606 0.23 +0.0 620,506 + MPMX19_00606 0.23 -1.4 620,507 - MPMX19_00606 0.23 -0.4 620,507 - MPMX19_00606 0.23 +0.0 620,507 - MPMX19_00606 0.23 +0.3 620,507 - MPMX19_00606 0.23 -1.3 620,507 - MPMX19_00606 0.23 -0.3 620,507 - MPMX19_00606 0.23 +0.0 620,507 - MPMX19_00606 0.23 +0.2 620,507 - MPMX19_00606 0.23 -2.1 620,507 - MPMX19_00606 0.23 +0.2 620,507 - MPMX19_00606 0.23 -1.0 620,507 - MPMX19_00606 0.23 -1.1 620,507 - MPMX19_00606 0.23 -0.9 620,686 + MPMX19_00606 0.52 -1.1 620,686 + MPMX19_00606 0.52 -1.0 620,686 + MPMX19_00606 0.52 +0.0 620,686 + MPMX19_00606 0.52 +0.3 620,686 + MPMX19_00606 0.52 +0.1 620,686 + MPMX19_00606 0.52 -1.4 620,686 + MPMX19_00606 0.52 +0.5 620,686 + MPMX19_00606 0.52 -2.3 620,686 + MPMX19_00606 0.52 +1.0 620,687 - MPMX19_00606 0.53 -1.0 620,687 - MPMX19_00606 0.53 -0.5 620,687 - MPMX19_00606 0.53 +0.7 620,687 - MPMX19_00606 0.53 -0.9 620,687 - MPMX19_00606 0.53 -1.1 620,687 - MPMX19_00606 0.53 -0.1 620,687 - MPMX19_00606 0.53 +0.0 620,687 - MPMX19_00606 0.53 +1.0 620,687 - MPMX19_00606 0.53 +0.2 620,687 - MPMX19_00606 0.53 -0.4 620,687 - MPMX19_00606 0.53 -1.0 620,687 - MPMX19_00606 0.53 -0.2 620,932 + -0.8 620,932 + -0.5 620,932 + -1.3 620,932 + +0.5 620,933 - -0.5 620,933 - -1.0 620,933 - -2.0 620,933 - +0.5 620,933 - +0.0 621,059 + -0.1 621,059 + -1.1 621,059 + +0.5 621,059 + +0.5 621,059 + -0.7 621,059 + +0.8 621,059 + -0.8 621,059 + -0.3 621,060 - +0.9 621,060 - -1.3 621,060 - +1.0 621,060 - -1.4 621,060 - +1.2 621,060 - -0.5 621,060 - +2.0 621,060 - -1.3 621,060 - -1.0 621,060 - -2.2 621,060 - -0.5 621,060 - +0.3 621,060 - -0.4 621,306 + MPMX19_00607 0.23 +0.0 621,306 + MPMX19_00607 0.23 +0.0 621,306 + MPMX19_00607 0.23 -0.1 621,306 + MPMX19_00607 0.23 +0.2 621,306 + MPMX19_00607 0.23 -0.5 621,306 + MPMX19_00607 0.23 -0.8 621,306 + MPMX19_00607 0.23 -1.0 621,306 + MPMX19_00607 0.23 -0.1 621,307 - MPMX19_00607 0.23 -1.1 621,307 - MPMX19_00607 0.23 +0.0 621,307 - MPMX19_00607 0.23 -1.2 621,307 - MPMX19_00607 0.23 -2.3 621,307 - MPMX19_00607 0.23 -0.1 621,307 - MPMX19_00607 0.23 -1.1 621,477 + MPMX19_00607 0.38 -1.5 621,477 + MPMX19_00607 0.38 -0.9 621,477 + MPMX19_00607 0.38 -2.8 621,477 + MPMX19_00607 0.38 -1.7 621,478 - MPMX19_00607 0.39 -1.0 621,478 - MPMX19_00607 0.39 -1.0 621,478 - MPMX19_00607 0.39 -2.0 621,478 - MPMX19_00607 0.39 -1.5 621,546 + MPMX19_00607 0.45 +0.6 621,546 + MPMX19_00607 0.45 -1.3 621,546 + MPMX19_00607 0.45 -1.1 621,546 + MPMX19_00607 0.45 +0.0 621,546 + MPMX19_00607 0.45 +0.6 621,546 + MPMX19_00607 0.45 -1.0 621,546 + MPMX19_00607 0.45 +0.5 621,546 + MPMX19_00607 0.45 -0.4 621,546 + MPMX19_00607 0.45 -0.8 621,546 + MPMX19_00607 0.45 -0.4 621,546 + MPMX19_00607 0.45 -3.0 621,546 + MPMX19_00607 0.45 -0.5 621,547 - MPMX19_00607 0.45 +0.7 621,547 - MPMX19_00607 0.45 -0.7 621,547 - MPMX19_00607 0.45 -2.4 621,547 - MPMX19_00607 0.45 +0.2 621,547 - MPMX19_00607 0.45 -1.4 621,547 - MPMX19_00607 0.45 +0.8 621,547 - MPMX19_00607 0.45 +0.3 621,547 - MPMX19_00607 0.45 +0.5 621,547 - MPMX19_00607 0.45 -1.0 621,547 - MPMX19_00607 0.45 -0.1 621,547 - MPMX19_00607 0.45 -0.2 621,547 - MPMX19_00607 0.45 +0.2 621,547 - MPMX19_00607 0.45 -0.5 621,547 - MPMX19_00607 0.45 -1.1 621,547 - MPMX19_00607 0.45 -0.7 621,723 + MPMX19_00607 0.60 -0.8 621,723 + MPMX19_00607 0.60 -0.4 621,723 + MPMX19_00607 0.60 +0.0 621,723 + MPMX19_00607 0.60 +0.6 621,723 + MPMX19_00607 0.60 -0.1 621,723 + MPMX19_00607 0.60 -1.0 621,723 + MPMX19_00607 0.60 -0.4 621,723 + MPMX19_00607 0.60 -0.5 621,723 + MPMX19_00607 0.60 +0.5 621,723 + MPMX19_00607 0.60 -1.3 621,723 + MPMX19_00607 0.60 +1.2 621,723 + MPMX19_00607 0.60 +0.0 621,723 + MPMX19_00607 0.60 +0.0 621,723 + MPMX19_00607 0.60 -0.2 621,723 + MPMX19_00607 0.60 -0.9 621,723 + MPMX19_00607 0.60 -2.0 621,723 + MPMX19_00607 0.60 -1.7 621,723 + MPMX19_00607 0.60 -0.9 621,723 + MPMX19_00607 0.60 -0.0 621,723 + MPMX19_00607 0.60 -0.3 621,723 + MPMX19_00607 0.60 -1.1 621,723 + MPMX19_00607 0.60 -0.4 621,723 + MPMX19_00607 0.60 +0.0 621,724 - MPMX19_00607 0.61 +0.2 621,724 - MPMX19_00607 0.61 -1.3 621,724 - MPMX19_00607 0.61 -0.1 621,724 - MPMX19_00607 0.61 -1.4 621,724 - MPMX19_00607 0.61 +0.5 621,724 - MPMX19_00607 0.61 -2.0 621,724 - MPMX19_00607 0.61 +0.5 621,724 - MPMX19_00607 0.61 +0.7 621,724 - MPMX19_00607 0.61 -1.0 621,724 - MPMX19_00607 0.61 -0.4 621,724 - MPMX19_00607 0.61 -1.5 621,724 - MPMX19_00607 0.61 -0.6 621,724 - MPMX19_00607 0.61 -0.3 621,724 - MPMX19_00607 0.61 -1.4 621,724 - MPMX19_00607 0.61 -0.4 621,724 - MPMX19_00607 0.61 -0.9 621,903 + MPMX19_00607 0.77 +1.0 621,903 + MPMX19_00607 0.77 -0.8 621,903 + MPMX19_00607 0.77 -0.2 621,903 + MPMX19_00607 0.77 -1.3 621,904 - MPMX19_00607 0.77 +1.0 621,904 - MPMX19_00607 0.77 -1.7 622,245 + +0.0 622,245 + -0.1 622,246 - -0.7 622,246 - -0.4 622,461 + MPMX19_00608 0.66 -0.0 622,535 + -1.5 622,535 + -1.0 622,535 + -1.2 622,535 + +0.3 622,535 + -1.0 622,536 - -1.8 622,536 - +0.5 622,536 - -0.0 622,536 - -1.3 622,628 + +0.2 622,629 - -1.5 622,629 - +0.2 622,629 - -0.8 622,629 - -2.1 622,630 + -1.8 622,630 + -1.0 622,630 + -1.0 622,630 + -0.1 622,644 - -1.5 622,780 - -0.6 622,780 - -1.0 622,839 + -1.5 622,840 - -0.4 622,859 - -0.7 622,861 - -0.7 622,861 - -3.4 622,956 + -1.1 622,995 + +1.0 622,996 - -0.5 622,996 - -2.7 622,996 - -1.0 622,997 + +0.3 622,998 - +0.7 622,998 - +0.1 623,000 + -0.9 623,000 + -0.5
Or see this region's nucleotide sequence