Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00566 and MPMX19_00567 are separated by 230 nucleotides MPMX19_00567 and MPMX19_00568 are separated by 76 nucleotides MPMX19_00568 and MPMX19_00569 are separated by 379 nucleotides
MPMX19_00566: MPMX19_00566 - hypothetical protein, at 580,578 to 581,963
_00566
MPMX19_00567: MPMX19_00567 - hypothetical protein, at 582,194 to 582,718
_00567
MPMX19_00568: MPMX19_00568 - Methyl-accepting chemotaxis protein, at 582,795 to 584,063
_00568
MPMX19_00569: MPMX19_00569 - hypothetical protein, at 584,443 to 585,489
_00569
Position (kb) 582
583
584
585 Strain fitness (log2 ratio) -2
-1
0
1
2 at 581.811 kb on + strand, within MPMX19_00566 at 581.811 kb on + strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.812 kb on - strand, within MPMX19_00566 at 581.949 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.050 kb on + strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.051 kb on - strand at 582.076 kb on + strand at 582.087 kb on - strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.112 kb on + strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.113 kb on - strand at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.290 kb on + strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.291 kb on - strand, within MPMX19_00567 at 582.323 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.440 kb on + strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.441 kb on - strand, within MPMX19_00567 at 582.473 kb on + strand, within MPMX19_00567 at 582.474 kb on - strand, within MPMX19_00567 at 582.531 kb on - strand, within MPMX19_00567 at 582.587 kb on + strand, within MPMX19_00567 at 582.587 kb on + strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.588 kb on - strand, within MPMX19_00567 at 582.692 kb on + strand at 582.693 kb on - strand at 582.693 kb on - strand at 582.693 kb on - strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.716 kb on + strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.717 kb on - strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.915 kb on + strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 582.916 kb on - strand at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.122 kb on + strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 583.123 kb on - strand, within MPMX19_00568 at 584.176 kb on + strand at 584.213 kb on + strand at 584.213 kb on + strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.214 kb on - strand at 584.254 kb on + strand at 584.255 kb on - strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.259 kb on + strand at 584.260 kb on - strand at 584.260 kb on - strand at 584.280 kb on + strand at 584.280 kb on + strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.281 kb on - strand at 584.313 kb on + strand at 584.314 kb on - strand at 584.314 kb on - strand at 584.387 kb on - strand at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.812 kb on + strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.813 kb on - strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.935 kb on + strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.936 kb on - strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.944 kb on + strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 584.945 kb on - strand, within MPMX19_00569 at 585.007 kb on + strand, within MPMX19_00569
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 581,811 + MPMX19_00566 0.89 +0.5 581,811 + MPMX19_00566 0.89 -1.5 581,812 - MPMX19_00566 0.89 -1.1 581,812 - MPMX19_00566 0.89 -0.2 581,812 - MPMX19_00566 0.89 -0.8 581,812 - MPMX19_00566 0.89 +0.2 581,949 + +0.2 582,050 + +0.3 582,050 + +0.3 582,050 + +1.5 582,050 + +0.5 582,050 + +0.5 582,050 + -2.2 582,050 + -0.3 582,050 + +0.3 582,051 - -1.3 582,051 - -1.3 582,051 - -2.3 582,051 - -0.2 582,051 - +0.1 582,051 - +1.2 582,051 - -0.5 582,051 - -1.2 582,051 - -0.1 582,051 - -0.7 582,051 - -1.1 582,051 - +0.2 582,051 - +0.7 582,076 + -1.3 582,087 - +1.7 582,112 + -1.1 582,112 + -0.8 582,112 + -1.3 582,112 + -0.1 582,112 + +0.2 582,112 + +0.9 582,112 + +0.7 582,112 + -0.3 582,112 + -0.1 582,112 + +0.9 582,113 - -0.4 582,113 - -0.5 582,113 - -1.0 582,113 - -0.9 582,113 - -1.3 582,113 - -1.8 582,113 - -1.2 582,113 - +0.3 582,113 - +1.1 582,113 - -1.0 582,290 + MPMX19_00567 0.18 +0.7 582,290 + MPMX19_00567 0.18 -1.0 582,290 + MPMX19_00567 0.18 -0.4 582,290 + MPMX19_00567 0.18 +0.2 582,290 + MPMX19_00567 0.18 -0.5 582,291 - MPMX19_00567 0.18 -2.6 582,291 - MPMX19_00567 0.18 -0.4 582,291 - MPMX19_00567 0.18 -1.3 582,323 + MPMX19_00567 0.25 +1.1 582,440 + MPMX19_00567 0.47 -0.8 582,440 + MPMX19_00567 0.47 -0.3 582,440 + MPMX19_00567 0.47 -0.9 582,440 + MPMX19_00567 0.47 +0.6 582,440 + MPMX19_00567 0.47 +0.5 582,440 + MPMX19_00567 0.47 +0.5 582,440 + MPMX19_00567 0.47 -0.7 582,440 + MPMX19_00567 0.47 -2.3 582,440 + MPMX19_00567 0.47 +0.1 582,440 + MPMX19_00567 0.47 -1.8 582,440 + MPMX19_00567 0.47 -1.4 582,440 + MPMX19_00567 0.47 -1.5 582,440 + MPMX19_00567 0.47 +0.2 582,440 + MPMX19_00567 0.47 -0.5 582,440 + MPMX19_00567 0.47 -1.9 582,440 + MPMX19_00567 0.47 -0.9 582,440 + MPMX19_00567 0.47 -1.4 582,440 + MPMX19_00567 0.47 -1.4 582,440 + MPMX19_00567 0.47 -0.4 582,441 - MPMX19_00567 0.47 -0.3 582,441 - MPMX19_00567 0.47 +0.6 582,441 - MPMX19_00567 0.47 -0.8 582,441 - MPMX19_00567 0.47 +0.8 582,441 - MPMX19_00567 0.47 -0.5 582,441 - MPMX19_00567 0.47 +0.1 582,441 - MPMX19_00567 0.47 -1.3 582,441 - MPMX19_00567 0.47 +0.2 582,441 - MPMX19_00567 0.47 -0.3 582,441 - MPMX19_00567 0.47 -0.3 582,441 - MPMX19_00567 0.47 -0.8 582,441 - MPMX19_00567 0.47 -0.5 582,441 - MPMX19_00567 0.47 -1.3 582,441 - MPMX19_00567 0.47 +0.9 582,441 - MPMX19_00567 0.47 -1.4 582,441 - MPMX19_00567 0.47 -0.4 582,441 - MPMX19_00567 0.47 -0.8 582,473 + MPMX19_00567 0.53 -1.1 582,474 - MPMX19_00567 0.53 +1.1 582,531 - MPMX19_00567 0.64 -0.3 582,587 + MPMX19_00567 0.75 -2.3 582,587 + MPMX19_00567 0.75 -2.4 582,588 - MPMX19_00567 0.75 +2.4 582,588 - MPMX19_00567 0.75 -1.3 582,588 - MPMX19_00567 0.75 +0.7 582,588 - MPMX19_00567 0.75 -1.3 582,588 - MPMX19_00567 0.75 +0.5 582,588 - MPMX19_00567 0.75 +0.5 582,692 + +2.1 582,693 - -0.8 582,693 - +0.4 582,693 - -0.6 582,716 + +0.3 582,716 + +1.6 582,716 + -1.4 582,716 + -0.4 582,717 - +1.3 582,717 - -0.5 582,717 - -0.9 582,717 - +0.1 582,717 - -0.3 582,915 + -1.1 582,915 + -1.1 582,915 + -0.6 582,915 + -0.1 582,915 + +0.1 582,915 + -0.8 582,915 + +0.5 582,915 + -0.9 582,915 + +0.2 582,915 + +0.6 582,915 + -1.4 582,915 + +0.5 582,915 + -0.1 582,916 - +0.8 582,916 - -0.6 582,916 - +0.3 582,916 - +0.5 582,916 - -1.6 582,916 - +0.9 582,916 - +1.1 582,916 - +0.5 582,916 - -0.8 582,916 - +0.3 582,916 - -0.4 582,916 - -0.4 582,916 - -0.2 582,916 - -0.3 583,122 + MPMX19_00568 0.26 -0.9 583,122 + MPMX19_00568 0.26 +1.1 583,122 + MPMX19_00568 0.26 -0.1 583,122 + MPMX19_00568 0.26 -1.1 583,122 + MPMX19_00568 0.26 -0.4 583,122 + MPMX19_00568 0.26 +0.1 583,122 + MPMX19_00568 0.26 +0.5 583,122 + MPMX19_00568 0.26 +0.4 583,122 + MPMX19_00568 0.26 -1.6 583,122 + MPMX19_00568 0.26 -0.7 583,122 + MPMX19_00568 0.26 -1.3 583,123 - MPMX19_00568 0.26 -1.4 583,123 - MPMX19_00568 0.26 -0.2 583,123 - MPMX19_00568 0.26 -0.9 583,123 - MPMX19_00568 0.26 -0.9 583,123 - MPMX19_00568 0.26 -2.1 583,123 - MPMX19_00568 0.26 -0.4 583,123 - MPMX19_00568 0.26 -1.8 583,123 - MPMX19_00568 0.26 -0.8 583,123 - MPMX19_00568 0.26 +1.8 583,123 - MPMX19_00568 0.26 -0.5 583,123 - MPMX19_00568 0.26 +1.3 583,123 - MPMX19_00568 0.26 -1.4 583,123 - MPMX19_00568 0.26 -2.3 584,176 + -1.8 584,213 + -0.3 584,213 + +0.4 584,214 - -1.1 584,214 - -1.5 584,214 - -0.5 584,214 - -0.7 584,214 - -1.9 584,254 + -1.3 584,255 - +0.1 584,259 + -1.4 584,259 + +0.2 584,259 + -1.4 584,259 + -0.1 584,259 + +0.1 584,259 + -1.1 584,259 + +0.2 584,259 + -1.9 584,260 - -1.3 584,260 - +0.1 584,280 + -0.5 584,280 + -1.2 584,281 - -0.4 584,281 - +0.1 584,281 - -1.3 584,281 - -0.3 584,281 - -0.4 584,313 + -0.8 584,314 - -0.8 584,314 - +0.8 584,387 - -0.4 584,812 + MPMX19_00569 0.35 +0.6 584,812 + MPMX19_00569 0.35 -1.1 584,812 + MPMX19_00569 0.35 +0.7 584,812 + MPMX19_00569 0.35 -1.3 584,812 + MPMX19_00569 0.35 -0.8 584,812 + MPMX19_00569 0.35 -1.0 584,812 + MPMX19_00569 0.35 -1.3 584,812 + MPMX19_00569 0.35 +0.5 584,813 - MPMX19_00569 0.35 -0.8 584,813 - MPMX19_00569 0.35 -0.6 584,813 - MPMX19_00569 0.35 +0.6 584,813 - MPMX19_00569 0.35 -1.0 584,813 - MPMX19_00569 0.35 -0.4 584,813 - MPMX19_00569 0.35 +0.5 584,813 - MPMX19_00569 0.35 -0.5 584,813 - MPMX19_00569 0.35 -0.1 584,813 - MPMX19_00569 0.35 +0.1 584,813 - MPMX19_00569 0.35 -0.9 584,813 - MPMX19_00569 0.35 -1.3 584,813 - MPMX19_00569 0.35 -1.9 584,813 - MPMX19_00569 0.35 -0.9 584,813 - MPMX19_00569 0.35 -0.9 584,813 - MPMX19_00569 0.35 -0.8 584,813 - MPMX19_00569 0.35 -1.9 584,935 + MPMX19_00569 0.47 -0.1 584,935 + MPMX19_00569 0.47 +0.1 584,935 + MPMX19_00569 0.47 -0.2 584,935 + MPMX19_00569 0.47 -2.1 584,935 + MPMX19_00569 0.47 -1.1 584,935 + MPMX19_00569 0.47 -0.2 584,935 + MPMX19_00569 0.47 -0.6 584,935 + MPMX19_00569 0.47 -0.5 584,935 + MPMX19_00569 0.47 +0.1 584,935 + MPMX19_00569 0.47 +0.5 584,935 + MPMX19_00569 0.47 -1.3 584,935 + MPMX19_00569 0.47 +0.5 584,935 + MPMX19_00569 0.47 -0.3 584,936 - MPMX19_00569 0.47 +0.5 584,936 - MPMX19_00569 0.47 -1.5 584,936 - MPMX19_00569 0.47 +0.1 584,936 - MPMX19_00569 0.47 -1.9 584,936 - MPMX19_00569 0.47 -0.8 584,936 - MPMX19_00569 0.47 +0.5 584,936 - MPMX19_00569 0.47 +1.1 584,936 - MPMX19_00569 0.47 -1.3 584,936 - MPMX19_00569 0.47 -0.9 584,944 + MPMX19_00569 0.48 +0.5 584,944 + MPMX19_00569 0.48 +0.9 584,944 + MPMX19_00569 0.48 -0.7 584,944 + MPMX19_00569 0.48 -1.3 584,944 + MPMX19_00569 0.48 -1.6 584,944 + MPMX19_00569 0.48 -1.3 584,945 - MPMX19_00569 0.48 -0.8 584,945 - MPMX19_00569 0.48 -1.1 584,945 - MPMX19_00569 0.48 +1.5 584,945 - MPMX19_00569 0.48 +0.6 585,007 + MPMX19_00569 0.54 -0.1
Or see this region's nucleotide sequence