Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00543

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00541 and MPMX19_00542 are separated by 86 nucleotidesMPMX19_00542 and MPMX19_00543 overlap by 11 nucleotidesMPMX19_00543 and MPMX19_00544 overlap by 4 nucleotidesMPMX19_00544 and MPMX19_00545 overlap by 4 nucleotides MPMX19_00541: MPMX19_00541 - Tungstate uptake system permease protein TupB, at 557,100 to 557,801 _00541 MPMX19_00542: MPMX19_00542 - Sulfur carrier protein FdhD, at 557,888 to 558,769 _00542 MPMX19_00543: MPMX19_00543 - Molybdenum cofactor guanylyltransferase, at 558,759 to 559,397 _00543 MPMX19_00544: MPMX19_00544 - hypothetical protein, at 559,394 to 559,903 _00544 MPMX19_00545: MPMX19_00545 - hypothetical protein, at 559,900 to 560,430 _00545 Position (kb) 558 559 560Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 557.824 kb on + strandat 557.824 kb on + strandat 557.825 kb on - strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.910 kb on + strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 557.911 kb on - strandat 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.017 kb on + strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.018 kb on - strand, within MPMX19_00542at 558.062 kb on + strand, within MPMX19_00542at 558.062 kb on + strand, within MPMX19_00542at 558.063 kb on - strand, within MPMX19_00542at 558.086 kb on + strand, within MPMX19_00542at 558.086 kb on + strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.087 kb on - strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.108 kb on + strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.109 kb on - strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.320 kb on + strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.321 kb on - strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.359 kb on + strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.360 kb on - strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.419 kb on + strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.420 kb on - strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.467 kb on + strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.468 kb on - strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.509 kb on + strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.510 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.626 kb on - strand, within MPMX19_00542at 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.767 kb on + strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.768 kb on - strandat 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.993 kb on + strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 558.994 kb on - strand, within MPMX19_00543at 559.205 kb on + strand, within MPMX19_00543at 559.635 kb on - strand, within MPMX19_00544at 559.635 kb on - strand, within MPMX19_00544at 559.751 kb on + strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 559.752 kb on - strand, within MPMX19_00544at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.215 kb on + strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.216 kb on - strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.242 kb on + strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.243 kb on - strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.254 kb on + strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.255 kb on - strand, within MPMX19_00545at 560.296 kb on + strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545at 560.297 kb on - strand, within MPMX19_00545

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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557,824 + +0.2
557,824 + +0.5
557,825 - -1.5
557,910 + +0.5
557,910 + -0.9
557,910 + -2.0
557,911 - -0.3
557,911 - -1.6
557,911 - +0.8
557,911 - -1.3
557,911 - -0.1
558,017 + MPMX19_00542 0.15 +0.3
558,017 + MPMX19_00542 0.15 +0.1
558,017 + MPMX19_00542 0.15 -1.7
558,017 + MPMX19_00542 0.15 +0.1
558,018 - MPMX19_00542 0.15 -0.5
558,018 - MPMX19_00542 0.15 -0.3
558,018 - MPMX19_00542 0.15 -0.4
558,018 - MPMX19_00542 0.15 -0.4
558,018 - MPMX19_00542 0.15 -1.4
558,018 - MPMX19_00542 0.15 -1.5
558,018 - MPMX19_00542 0.15 -0.1
558,062 + MPMX19_00542 0.20 -0.6
558,062 + MPMX19_00542 0.20 -0.6
558,063 - MPMX19_00542 0.20 -0.9
558,086 + MPMX19_00542 0.22 +0.5
558,086 + MPMX19_00542 0.22 -1.3
558,087 - MPMX19_00542 0.23 +0.4
558,087 - MPMX19_00542 0.23 +1.3
558,087 - MPMX19_00542 0.23 +0.8
558,087 - MPMX19_00542 0.23 -0.3
558,108 + MPMX19_00542 0.25 +0.1
558,108 + MPMX19_00542 0.25 -1.5
558,108 + MPMX19_00542 0.25 -0.7
558,109 - MPMX19_00542 0.25 -0.5
558,109 - MPMX19_00542 0.25 +1.3
558,109 - MPMX19_00542 0.25 -1.3
558,109 - MPMX19_00542 0.25 +0.1
558,320 + MPMX19_00542 0.49 -0.8
558,320 + MPMX19_00542 0.49 -1.9
558,320 + MPMX19_00542 0.49 +0.7
558,320 + MPMX19_00542 0.49 -0.3
558,320 + MPMX19_00542 0.49 -1.3
558,320 + MPMX19_00542 0.49 -0.3
558,321 - MPMX19_00542 0.49 +0.1
558,321 - MPMX19_00542 0.49 -0.1
558,321 - MPMX19_00542 0.49 +0.3
558,321 - MPMX19_00542 0.49 -1.6
558,321 - MPMX19_00542 0.49 -0.2
558,321 - MPMX19_00542 0.49 -0.7
558,321 - MPMX19_00542 0.49 -0.2
558,321 - MPMX19_00542 0.49 -0.1
558,321 - MPMX19_00542 0.49 -1.5
558,321 - MPMX19_00542 0.49 -0.2
558,321 - MPMX19_00542 0.49 -0.7
558,359 + MPMX19_00542 0.53 +0.5
558,359 + MPMX19_00542 0.53 +0.2
558,359 + MPMX19_00542 0.53 +0.7
558,359 + MPMX19_00542 0.53 -1.3
558,359 + MPMX19_00542 0.53 -0.3
558,359 + MPMX19_00542 0.53 -0.9
558,359 + MPMX19_00542 0.53 -0.7
558,360 - MPMX19_00542 0.54 +1.1
558,360 - MPMX19_00542 0.54 +0.1
558,360 - MPMX19_00542 0.54 +0.2
558,360 - MPMX19_00542 0.54 -1.3
558,360 - MPMX19_00542 0.54 -1.1
558,360 - MPMX19_00542 0.54 -0.4
558,360 - MPMX19_00542 0.54 -0.3
558,360 - MPMX19_00542 0.54 +0.8
558,360 - MPMX19_00542 0.54 +0.1
558,360 - MPMX19_00542 0.54 -0.3
558,360 - MPMX19_00542 0.54 -1.1
558,360 - MPMX19_00542 0.54 -0.9
558,419 + MPMX19_00542 0.60 -0.2
558,419 + MPMX19_00542 0.60 -0.9
558,419 + MPMX19_00542 0.60 -2.1
558,419 + MPMX19_00542 0.60 +1.4
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 -1.5
558,419 + MPMX19_00542 0.60 -1.7
558,419 + MPMX19_00542 0.60 -0.9
558,419 + MPMX19_00542 0.60 -1.5
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 -0.9
558,419 + MPMX19_00542 0.60 -0.4
558,419 + MPMX19_00542 0.60 +1.1
558,419 + MPMX19_00542 0.60 +0.9
558,419 + MPMX19_00542 0.60 -1.3
558,419 + MPMX19_00542 0.60 -1.6
558,419 + MPMX19_00542 0.60 -0.6
558,419 + MPMX19_00542 0.60 -1.1
558,419 + MPMX19_00542 0.60 -0.9
558,419 + MPMX19_00542 0.60 -0.1
558,419 + MPMX19_00542 0.60 -0.5
558,420 - MPMX19_00542 0.60 -1.1
558,420 - MPMX19_00542 0.60 -0.7
558,420 - MPMX19_00542 0.60 -0.5
558,420 - MPMX19_00542 0.60 +0.3
558,420 - MPMX19_00542 0.60 -1.4
558,420 - MPMX19_00542 0.60 -0.5
558,420 - MPMX19_00542 0.60 +0.4
558,420 - MPMX19_00542 0.60 -0.1
558,420 - MPMX19_00542 0.60 +0.2
558,420 - MPMX19_00542 0.60 -0.4
558,420 - MPMX19_00542 0.60 -2.3
558,420 - MPMX19_00542 0.60 -0.1
558,420 - MPMX19_00542 0.60 -0.2
558,420 - MPMX19_00542 0.60 -1.1
558,420 - MPMX19_00542 0.60 -1.3
558,420 - MPMX19_00542 0.60 +0.5
558,420 - MPMX19_00542 0.60 +0.0
558,467 + MPMX19_00542 0.66 -0.6
558,467 + MPMX19_00542 0.66 -0.7
558,467 + MPMX19_00542 0.66 +0.7
558,467 + MPMX19_00542 0.66 -1.3
558,467 + MPMX19_00542 0.66 +2.7
558,468 - MPMX19_00542 0.66 -2.1
558,468 - MPMX19_00542 0.66 +0.9
558,468 - MPMX19_00542 0.66 -1.1
558,468 - MPMX19_00542 0.66 +1.3
558,468 - MPMX19_00542 0.66 -1.5
558,468 - MPMX19_00542 0.66 -0.8
558,468 - MPMX19_00542 0.66 +1.7
558,468 - MPMX19_00542 0.66 -0.6
558,468 - MPMX19_00542 0.66 -1.6
558,468 - MPMX19_00542 0.66 +0.7
558,468 - MPMX19_00542 0.66 -1.6
558,509 + MPMX19_00542 0.70 -0.1
558,509 + MPMX19_00542 0.70 -0.6
558,510 - MPMX19_00542 0.71 +0.4
558,510 - MPMX19_00542 0.71 +0.2
558,510 - MPMX19_00542 0.71 -1.5
558,626 - MPMX19_00542 0.84 -0.4
558,626 - MPMX19_00542 0.84 -0.7
558,767 + -1.4
558,767 + +0.1
558,767 + -0.4
558,767 + -0.3
558,767 + -1.4
558,767 + -0.7
558,767 + -0.1
558,767 + -1.5
558,767 + +0.5
558,768 - -1.4
558,768 - -1.3
558,768 - -0.6
558,768 - -0.1
558,768 - -1.3
558,768 - +0.5
558,768 - +0.5
558,993 + MPMX19_00543 0.37 -0.9
558,993 + MPMX19_00543 0.37 -0.2
558,993 + MPMX19_00543 0.37 +0.5
558,993 + MPMX19_00543 0.37 -2.3
558,994 - MPMX19_00543 0.37 -0.2
558,994 - MPMX19_00543 0.37 -0.5
558,994 - MPMX19_00543 0.37 -0.7
559,205 + MPMX19_00543 0.70 -1.5
559,635 - MPMX19_00544 0.47 +0.5
559,635 - MPMX19_00544 0.47 -0.7
559,751 + MPMX19_00544 0.70 -0.3
559,752 - MPMX19_00544 0.70 +0.1
559,752 - MPMX19_00544 0.70 +0.6
560,215 + MPMX19_00545 0.59 +0.4
560,215 + MPMX19_00545 0.59 -1.3
560,215 + MPMX19_00545 0.59 -0.1
560,215 + MPMX19_00545 0.59 -0.4
560,215 + MPMX19_00545 0.59 -0.1
560,215 + MPMX19_00545 0.59 -1.2
560,216 - MPMX19_00545 0.60 -3.7
560,216 - MPMX19_00545 0.60 +0.1
560,216 - MPMX19_00545 0.60 +0.3
560,242 + MPMX19_00545 0.64 -0.6
560,242 + MPMX19_00545 0.64 -1.6
560,242 + MPMX19_00545 0.64 +1.3
560,242 + MPMX19_00545 0.64 -0.9
560,242 + MPMX19_00545 0.64 -0.2
560,242 + MPMX19_00545 0.64 -0.3
560,242 + MPMX19_00545 0.64 -0.7
560,243 - MPMX19_00545 0.65 -1.4
560,243 - MPMX19_00545 0.65 -0.3
560,243 - MPMX19_00545 0.65 +1.6
560,243 - MPMX19_00545 0.65 +0.3
560,243 - MPMX19_00545 0.65 -1.0
560,254 + MPMX19_00545 0.67 -1.4
560,254 + MPMX19_00545 0.67 -1.8
560,254 + MPMX19_00545 0.67 +0.5
560,254 + MPMX19_00545 0.67 -0.8
560,254 + MPMX19_00545 0.67 -0.6
560,255 - MPMX19_00545 0.67 +0.1
560,255 - MPMX19_00545 0.67 -0.4
560,255 - MPMX19_00545 0.67 -0.0
560,296 + MPMX19_00545 0.75 -0.3
560,297 - MPMX19_00545 0.75 +0.2
560,297 - MPMX19_00545 0.75 -0.5

Or see this region's nucleotide sequence