Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00531

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00529 and MPMX19_00530 are separated by 42 nucleotidesMPMX19_00530 and MPMX19_00531 are separated by 125 nucleotidesMPMX19_00531 and MPMX19_00532 are separated by 130 nucleotides MPMX19_00529: MPMX19_00529 - hypothetical protein, at 540,499 to 541,296 _00529 MPMX19_00530: MPMX19_00530 - Orotate phosphoribosyltransferase, at 541,339 to 542,022 _00530 MPMX19_00531: MPMX19_00531 - hypothetical protein, at 542,148 to 543,824 _00531 MPMX19_00532: MPMX19_00532 - hypothetical protein, at 543,955 to 545,661 _00532 Position (kb) 542 543 544Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 541.535 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.715 kb on + strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.716 kb on - strand, within MPMX19_00530at 541.896 kb on - strand, within MPMX19_00530at 541.896 kb on - strand, within MPMX19_00530at 542.074 kb on - strandat 542.165 kb on + strandat 542.165 kb on + strandat 542.166 kb on - strandat 542.166 kb on - strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.173 kb on + strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 542.174 kb on - strandat 543.115 kb on + strand, within MPMX19_00531at 543.115 kb on + strand, within MPMX19_00531at 543.116 kb on - strand, within MPMX19_00531at 543.116 kb on - strand, within MPMX19_00531at 543.116 kb on - strand, within MPMX19_00531at 543.116 kb on - strand, within MPMX19_00531at 543.128 kb on + strand, within MPMX19_00531at 543.128 kb on + strand, within MPMX19_00531at 543.129 kb on - strand, within MPMX19_00531at 543.265 kb on + strand, within MPMX19_00531at 543.266 kb on - strand, within MPMX19_00531at 543.266 kb on - strand, within MPMX19_00531at 543.266 kb on - strand, within MPMX19_00531at 543.266 kb on - strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.271 kb on + strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.272 kb on - strand, within MPMX19_00531at 543.449 kb on + strand, within MPMX19_00531at 543.449 kb on + strand, within MPMX19_00531at 543.449 kb on + strand, within MPMX19_00531at 543.449 kb on + strand, within MPMX19_00531at 543.449 kb on + strand, within MPMX19_00531at 543.450 kb on - strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.451 kb on + strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.452 kb on - strand, within MPMX19_00531at 543.881 kb on - strandat 543.890 kb on + strandat 543.890 kb on + strandat 543.890 kb on + strandat 543.891 kb on - strandat 543.891 kb on - strandat 543.891 kb on - strandat 543.891 kb on - strandat 543.892 kb on + strandat 543.893 kb on - strandat 543.970 kb on + strandat 543.970 kb on + strandat 543.970 kb on + strandat 543.970 kb on + strandat 543.970 kb on + strandat 543.971 kb on - strandat 544.677 kb on + strand, within MPMX19_00532at 544.677 kb on + strand, within MPMX19_00532

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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541,535 + MPMX19_00530 0.29 -1.1
541,715 + MPMX19_00530 0.55 -0.5
541,715 + MPMX19_00530 0.55 +0.5
541,715 + MPMX19_00530 0.55 -0.1
541,715 + MPMX19_00530 0.55 -0.6
541,715 + MPMX19_00530 0.55 +0.3
541,715 + MPMX19_00530 0.55 -0.1
541,715 + MPMX19_00530 0.55 -1.2
541,716 - MPMX19_00530 0.55 -0.3
541,716 - MPMX19_00530 0.55 +1.7
541,716 - MPMX19_00530 0.55 -0.2
541,716 - MPMX19_00530 0.55 -1.4
541,716 - MPMX19_00530 0.55 -0.7
541,896 - MPMX19_00530 0.81 +0.8
541,896 - MPMX19_00530 0.81 -1.6
542,074 - -2.3
542,165 + -1.4
542,165 + -1.8
542,166 - -0.2
542,166 - -0.7
542,173 + -0.5
542,173 + +0.6
542,173 + -0.8
542,173 + +1.1
542,173 + -1.3
542,173 + -1.6
542,173 + +0.8
542,173 + +0.5
542,173 + +0.3
542,173 + -0.2
542,174 - -0.9
542,174 - -0.5
542,174 - -0.9
542,174 - -0.9
542,174 - -0.5
542,174 - -0.5
543,115 + MPMX19_00531 0.58 -0.9
543,115 + MPMX19_00531 0.58 -1.2
543,116 - MPMX19_00531 0.58 -0.4
543,116 - MPMX19_00531 0.58 -0.1
543,116 - MPMX19_00531 0.58 -0.5
543,116 - MPMX19_00531 0.58 -0.7
543,128 + MPMX19_00531 0.58 -0.5
543,128 + MPMX19_00531 0.58 -0.2
543,129 - MPMX19_00531 0.58 -0.6
543,265 + MPMX19_00531 0.67 -0.5
543,266 - MPMX19_00531 0.67 +0.6
543,266 - MPMX19_00531 0.67 -1.5
543,266 - MPMX19_00531 0.67 -0.8
543,266 - MPMX19_00531 0.67 +0.9
543,271 + MPMX19_00531 0.67 +0.4
543,271 + MPMX19_00531 0.67 -1.6
543,271 + MPMX19_00531 0.67 +0.6
543,271 + MPMX19_00531 0.67 -0.0
543,271 + MPMX19_00531 0.67 -0.1
543,271 + MPMX19_00531 0.67 -1.7
543,271 + MPMX19_00531 0.67 +0.7
543,271 + MPMX19_00531 0.67 +0.2
543,271 + MPMX19_00531 0.67 -0.1
543,271 + MPMX19_00531 0.67 -1.5
543,271 + MPMX19_00531 0.67 +0.3
543,271 + MPMX19_00531 0.67 -0.3
543,271 + MPMX19_00531 0.67 -1.5
543,271 + MPMX19_00531 0.67 -0.2
543,271 + MPMX19_00531 0.67 -1.2
543,271 + MPMX19_00531 0.67 -0.0
543,271 + MPMX19_00531 0.67 -0.9
543,271 + MPMX19_00531 0.67 -1.5
543,271 + MPMX19_00531 0.67 +0.5
543,271 + MPMX19_00531 0.67 -0.5
543,271 + MPMX19_00531 0.67 -0.6
543,271 + MPMX19_00531 0.67 -0.2
543,271 + MPMX19_00531 0.67 -2.2
543,271 + MPMX19_00531 0.67 -1.4
543,271 + MPMX19_00531 0.67 -1.6
543,271 + MPMX19_00531 0.67 +0.9
543,271 + MPMX19_00531 0.67 -2.2
543,271 + MPMX19_00531 0.67 +0.5
543,271 + MPMX19_00531 0.67 -1.8
543,271 + MPMX19_00531 0.67 -1.8
543,271 + MPMX19_00531 0.67 -0.3
543,271 + MPMX19_00531 0.67 -0.7
543,271 + MPMX19_00531 0.67 -0.9
543,271 + MPMX19_00531 0.67 -1.7
543,271 + MPMX19_00531 0.67 +1.7
543,271 + MPMX19_00531 0.67 -0.5
543,271 + MPMX19_00531 0.67 -0.2
543,271 + MPMX19_00531 0.67 -1.2
543,272 - MPMX19_00531 0.67 -0.7
543,272 - MPMX19_00531 0.67 +0.1
543,272 - MPMX19_00531 0.67 -0.9
543,272 - MPMX19_00531 0.67 +0.1
543,272 - MPMX19_00531 0.67 +1.2
543,272 - MPMX19_00531 0.67 -2.7
543,272 - MPMX19_00531 0.67 -1.7
543,272 - MPMX19_00531 0.67 -0.8
543,272 - MPMX19_00531 0.67 -1.1
543,272 - MPMX19_00531 0.67 -0.2
543,272 - MPMX19_00531 0.67 +1.1
543,272 - MPMX19_00531 0.67 -0.9
543,272 - MPMX19_00531 0.67 -1.4
543,272 - MPMX19_00531 0.67 -0.6
543,272 - MPMX19_00531 0.67 +0.9
543,272 - MPMX19_00531 0.67 -0.4
543,272 - MPMX19_00531 0.67 -0.5
543,272 - MPMX19_00531 0.67 +1.5
543,272 - MPMX19_00531 0.67 -0.1
543,272 - MPMX19_00531 0.67 +0.8
543,272 - MPMX19_00531 0.67 -1.0
543,272 - MPMX19_00531 0.67 +0.2
543,272 - MPMX19_00531 0.67 -1.6
543,272 - MPMX19_00531 0.67 -0.4
543,272 - MPMX19_00531 0.67 -1.1
543,272 - MPMX19_00531 0.67 +1.3
543,272 - MPMX19_00531 0.67 -0.9
543,272 - MPMX19_00531 0.67 +0.1
543,272 - MPMX19_00531 0.67 +0.3
543,272 - MPMX19_00531 0.67 -0.2
543,272 - MPMX19_00531 0.67 -0.3
543,272 - MPMX19_00531 0.67 -0.6
543,449 + MPMX19_00531 0.78 +2.1
543,449 + MPMX19_00531 0.78 -1.4
543,449 + MPMX19_00531 0.78 -0.4
543,449 + MPMX19_00531 0.78 +0.2
543,449 + MPMX19_00531 0.78 -0.3
543,450 - MPMX19_00531 0.78 -1.2
543,451 + MPMX19_00531 0.78 -0.3
543,451 + MPMX19_00531 0.78 -0.8
543,451 + MPMX19_00531 0.78 -1.6
543,451 + MPMX19_00531 0.78 +0.4
543,451 + MPMX19_00531 0.78 -0.8
543,451 + MPMX19_00531 0.78 +0.3
543,451 + MPMX19_00531 0.78 +0.3
543,451 + MPMX19_00531 0.78 -0.2
543,451 + MPMX19_00531 0.78 +0.2
543,451 + MPMX19_00531 0.78 -0.7
543,451 + MPMX19_00531 0.78 +0.1
543,451 + MPMX19_00531 0.78 +0.1
543,451 + MPMX19_00531 0.78 -1.7
543,451 + MPMX19_00531 0.78 +1.5
543,451 + MPMX19_00531 0.78 -0.2
543,451 + MPMX19_00531 0.78 -0.5
543,451 + MPMX19_00531 0.78 -0.5
543,451 + MPMX19_00531 0.78 -0.7
543,451 + MPMX19_00531 0.78 -0.3
543,451 + MPMX19_00531 0.78 +0.7
543,451 + MPMX19_00531 0.78 +1.6
543,451 + MPMX19_00531 0.78 -0.1
543,451 + MPMX19_00531 0.78 -0.5
543,451 + MPMX19_00531 0.78 -0.7
543,451 + MPMX19_00531 0.78 +1.3
543,451 + MPMX19_00531 0.78 -0.9
543,451 + MPMX19_00531 0.78 -0.6
543,451 + MPMX19_00531 0.78 -1.5
543,451 + MPMX19_00531 0.78 +1.2
543,451 + MPMX19_00531 0.78 -0.3
543,451 + MPMX19_00531 0.78 +0.1
543,451 + MPMX19_00531 0.78 -0.9
543,451 + MPMX19_00531 0.78 -2.0
543,451 + MPMX19_00531 0.78 +1.1
543,451 + MPMX19_00531 0.78 +0.1
543,451 + MPMX19_00531 0.78 +1.2
543,451 + MPMX19_00531 0.78 -1.2
543,451 + MPMX19_00531 0.78 -0.7
543,451 + MPMX19_00531 0.78 -1.1
543,452 - MPMX19_00531 0.78 +0.1
543,452 - MPMX19_00531 0.78 +0.5
543,452 - MPMX19_00531 0.78 +2.1
543,452 - MPMX19_00531 0.78 -1.4
543,452 - MPMX19_00531 0.78 -0.2
543,452 - MPMX19_00531 0.78 -0.7
543,452 - MPMX19_00531 0.78 +1.1
543,452 - MPMX19_00531 0.78 +0.8
543,452 - MPMX19_00531 0.78 -1.3
543,452 - MPMX19_00531 0.78 -1.0
543,452 - MPMX19_00531 0.78 +0.9
543,452 - MPMX19_00531 0.78 -0.6
543,452 - MPMX19_00531 0.78 +0.3
543,452 - MPMX19_00531 0.78 -1.3
543,452 - MPMX19_00531 0.78 -1.3
543,452 - MPMX19_00531 0.78 +0.5
543,452 - MPMX19_00531 0.78 -2.8
543,452 - MPMX19_00531 0.78 -0.6
543,452 - MPMX19_00531 0.78 -2.8
543,452 - MPMX19_00531 0.78 +0.8
543,452 - MPMX19_00531 0.78 -0.9
543,452 - MPMX19_00531 0.78 -0.4
543,452 - MPMX19_00531 0.78 -1.4
543,452 - MPMX19_00531 0.78 -1.1
543,452 - MPMX19_00531 0.78 +2.4
543,452 - MPMX19_00531 0.78 +1.7
543,452 - MPMX19_00531 0.78 +0.1
543,452 - MPMX19_00531 0.78 +0.0
543,452 - MPMX19_00531 0.78 -0.1
543,452 - MPMX19_00531 0.78 +0.1
543,452 - MPMX19_00531 0.78 +0.7
543,452 - MPMX19_00531 0.78 -1.2
543,452 - MPMX19_00531 0.78 +0.6
543,452 - MPMX19_00531 0.78 -2.6
543,452 - MPMX19_00531 0.78 -1.4
543,881 - +2.1
543,890 + +1.3
543,890 + +0.7
543,890 + -0.3
543,891 - -0.1
543,891 - +0.3
543,891 - +0.6
543,891 - +0.2
543,892 + -0.2
543,893 - -0.1
543,970 + +0.1
543,970 + -0.7
543,970 + -0.2
543,970 + -0.1
543,970 + +0.2
543,971 - -0.2
544,677 + MPMX19_00532 0.42 -0.1
544,677 + MPMX19_00532 0.42 +0.9

Or see this region's nucleotide sequence