Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00525 and MPMX19_00526 are separated by 376 nucleotides MPMX19_00526 and MPMX19_00527 are separated by 31 nucleotides MPMX19_00527 and MPMX19_00528 are separated by 67 nucleotides
MPMX19_00525: MPMX19_00525 - Isoleucine--tRNA ligase, at 532,838 to 535,681
_00525
MPMX19_00526: MPMX19_00526 - hypothetical protein, at 536,058 to 537,035
_00526
MPMX19_00527: MPMX19_00527 - hypothetical protein, at 537,067 to 537,789
_00527
MPMX19_00528: MPMX19_00528 - Beta-barrel assembly-enhancing protease, at 537,857 to 540,502
_00528
Position (kb) 536
537
538 Strain fitness (log2 ratio) -2
-1
0
1
2 at 535.706 kb on - strand at 535.706 kb on - strand at 535.706 kb on - strand at 535.781 kb on - strand at 535.781 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.984 kb on + strand at 535.984 kb on + strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.986 kb on - strand at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.767 kb on - strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.817 kb on + strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.818 kb on - strand, within MPMX19_00526 at 536.880 kb on + strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.881 kb on - strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.931 kb on + strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.932 kb on - strand, within MPMX19_00526 at 536.941 kb on - strand at 536.949 kb on + strand at 537.000 kb on + strand at 537.000 kb on + strand at 537.001 kb on - strand at 537.001 kb on - strand at 537.001 kb on - strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.088 kb on + strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.089 kb on - strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.121 kb on + strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.122 kb on - strand at 537.247 kb on + strand, within MPMX19_00527 at 537.247 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.265 kb on + strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.266 kb on - strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.319 kb on + strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.320 kb on - strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.631 kb on + strand, within MPMX19_00527 at 537.632 kb on - strand, within MPMX19_00527 at 537.632 kb on - strand, within MPMX19_00527 at 537.787 kb on + strand at 537.787 kb on + strand at 537.788 kb on - strand at 537.923 kb on + strand at 537.923 kb on + strand at 537.923 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 535,706 - -2.3 535,706 - -1.4 535,706 - +2.1 535,781 - -2.0 535,781 - -1.0 535,854 - -0.3 535,854 - +0.3 535,854 - +0.1 535,984 + -0.7 535,984 + -1.0 535,985 - -1.8 535,985 - -0.2 535,985 - -0.2 535,985 - -0.5 535,985 - -0.3 535,985 - -0.0 535,985 - -1.7 535,985 - -1.7 535,985 - -0.5 535,986 - +0.4 536,454 + MPMX19_00526 0.40 -0.7 536,454 + MPMX19_00526 0.40 -0.8 536,454 + MPMX19_00526 0.40 +0.5 536,454 + MPMX19_00526 0.40 -1.3 536,454 + MPMX19_00526 0.40 -0.5 536,454 + MPMX19_00526 0.40 +0.3 536,454 + MPMX19_00526 0.40 -0.5 536,455 - MPMX19_00526 0.41 -0.7 536,455 - MPMX19_00526 0.41 +1.4 536,455 - MPMX19_00526 0.41 -1.3 536,455 - MPMX19_00526 0.41 -0.7 536,455 - MPMX19_00526 0.41 -0.5 536,455 - MPMX19_00526 0.41 -0.6 536,455 - MPMX19_00526 0.41 +0.7 536,455 - MPMX19_00526 0.41 -0.9 536,455 - MPMX19_00526 0.41 +0.5 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 -0.3 536,469 + MPMX19_00526 0.42 -1.8 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 -1.1 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 +0.8 536,469 + MPMX19_00526 0.42 +0.1 536,469 + MPMX19_00526 0.42 -1.2 536,469 + MPMX19_00526 0.42 -0.3 536,469 + MPMX19_00526 0.42 -0.8 536,469 + MPMX19_00526 0.42 -1.6 536,469 + MPMX19_00526 0.42 -0.6 536,469 + MPMX19_00526 0.42 -0.5 536,469 + MPMX19_00526 0.42 +0.7 536,470 - MPMX19_00526 0.42 -0.4 536,470 - MPMX19_00526 0.42 +0.4 536,470 - MPMX19_00526 0.42 -1.1 536,470 - MPMX19_00526 0.42 +1.2 536,470 - MPMX19_00526 0.42 -2.0 536,470 - MPMX19_00526 0.42 -1.5 536,470 - MPMX19_00526 0.42 -0.3 536,470 - MPMX19_00526 0.42 -1.1 536,470 - MPMX19_00526 0.42 +1.0 536,470 - MPMX19_00526 0.42 +0.3 536,470 - MPMX19_00526 0.42 +0.5 536,470 - MPMX19_00526 0.42 +0.0 536,470 - MPMX19_00526 0.42 -0.9 536,499 + MPMX19_00526 0.45 -0.0 536,499 + MPMX19_00526 0.45 +0.3 536,500 - MPMX19_00526 0.45 -0.1 536,500 - MPMX19_00526 0.45 +1.1 536,500 - MPMX19_00526 0.45 -0.7 536,500 - MPMX19_00526 0.45 -0.2 536,500 - MPMX19_00526 0.45 -0.6 536,500 - MPMX19_00526 0.45 +0.6 536,577 + MPMX19_00526 0.53 -0.9 536,577 + MPMX19_00526 0.53 -2.2 536,577 + MPMX19_00526 0.53 -0.2 536,578 - MPMX19_00526 0.53 -0.5 536,578 - MPMX19_00526 0.53 +0.5 536,578 - MPMX19_00526 0.53 +0.5 536,578 - MPMX19_00526 0.53 -0.3 536,578 - MPMX19_00526 0.53 -0.5 536,578 - MPMX19_00526 0.53 -1.8 536,578 - MPMX19_00526 0.53 -1.8 536,578 - MPMX19_00526 0.53 -0.3 536,767 - MPMX19_00526 0.72 -0.5 536,767 - MPMX19_00526 0.72 -0.7 536,767 - MPMX19_00526 0.72 +0.9 536,817 + MPMX19_00526 0.78 +0.5 536,817 + MPMX19_00526 0.78 -1.1 536,817 + MPMX19_00526 0.78 -0.7 536,817 + MPMX19_00526 0.78 +0.1 536,817 + MPMX19_00526 0.78 -0.4 536,817 + MPMX19_00526 0.78 -0.7 536,817 + MPMX19_00526 0.78 -0.2 536,817 + MPMX19_00526 0.78 +0.3 536,817 + MPMX19_00526 0.78 -0.4 536,817 + MPMX19_00526 0.78 +0.4 536,817 + MPMX19_00526 0.78 +0.3 536,817 + MPMX19_00526 0.78 +0.1 536,818 - MPMX19_00526 0.78 -0.7 536,818 - MPMX19_00526 0.78 -0.6 536,818 - MPMX19_00526 0.78 -0.4 536,818 - MPMX19_00526 0.78 -0.7 536,818 - MPMX19_00526 0.78 +0.2 536,818 - MPMX19_00526 0.78 +0.5 536,818 - MPMX19_00526 0.78 -0.4 536,818 - MPMX19_00526 0.78 +0.7 536,818 - MPMX19_00526 0.78 -0.4 536,818 - MPMX19_00526 0.78 +0.5 536,880 + MPMX19_00526 0.84 -0.7 536,881 - MPMX19_00526 0.84 -1.5 536,881 - MPMX19_00526 0.84 -1.7 536,881 - MPMX19_00526 0.84 -0.9 536,881 - MPMX19_00526 0.84 -0.5 536,881 - MPMX19_00526 0.84 +0.1 536,931 + MPMX19_00526 0.89 -1.6 536,931 + MPMX19_00526 0.89 +0.0 536,931 + MPMX19_00526 0.89 -0.9 536,932 - MPMX19_00526 0.89 -2.4 536,932 - MPMX19_00526 0.89 -0.5 536,932 - MPMX19_00526 0.89 -1.5 536,932 - MPMX19_00526 0.89 -0.4 536,932 - MPMX19_00526 0.89 +0.1 536,932 - MPMX19_00526 0.89 -2.2 536,941 - -0.3 536,949 + +0.9 537,000 + +1.4 537,000 + -0.9 537,001 - +0.5 537,001 - -0.7 537,001 - -0.9 537,088 + -0.3 537,088 + +1.3 537,088 + -0.3 537,088 + -0.7 537,088 + -2.1 537,088 + -0.2 537,088 + +1.1 537,088 + +1.7 537,088 + -0.7 537,088 + +0.8 537,089 - -0.3 537,089 - -0.3 537,089 - -0.9 537,089 - -0.9 537,089 - -0.2 537,121 + -0.3 537,121 + -1.3 537,121 + -0.2 537,121 + -0.8 537,121 + -0.3 537,121 + -1.7 537,121 + -0.3 537,121 + -2.2 537,121 + -1.3 537,121 + -1.6 537,121 + -1.3 537,121 + +1.1 537,121 + -0.9 537,121 + +1.1 537,121 + -0.4 537,121 + -1.1 537,122 - -0.4 537,122 - -0.5 537,122 - +0.7 537,122 - -0.9 537,122 - -0.5 537,122 - +0.8 537,122 - -0.4 537,122 - +0.5 537,122 - -0.6 537,122 - -0.2 537,122 - -0.3 537,122 - -1.4 537,122 - +0.3 537,122 - -0.7 537,122 - -0.3 537,122 - -0.7 537,122 - -2.7 537,122 - -2.1 537,247 + MPMX19_00527 0.25 -1.0 537,247 + MPMX19_00527 0.25 +0.3 537,265 + MPMX19_00527 0.27 -1.4 537,265 + MPMX19_00527 0.27 -0.6 537,265 + MPMX19_00527 0.27 -1.2 537,265 + MPMX19_00527 0.27 -0.7 537,265 + MPMX19_00527 0.27 -0.3 537,265 + MPMX19_00527 0.27 -0.1 537,265 + MPMX19_00527 0.27 +0.2 537,265 + MPMX19_00527 0.27 +0.3 537,265 + MPMX19_00527 0.27 +0.7 537,265 + MPMX19_00527 0.27 +0.8 537,265 + MPMX19_00527 0.27 -1.4 537,265 + MPMX19_00527 0.27 -0.9 537,265 + MPMX19_00527 0.27 +1.3 537,265 + MPMX19_00527 0.27 -0.8 537,266 - MPMX19_00527 0.28 +0.7 537,266 - MPMX19_00527 0.28 -1.0 537,266 - MPMX19_00527 0.28 -0.3 537,266 - MPMX19_00527 0.28 -0.3 537,266 - MPMX19_00527 0.28 -0.7 537,266 - MPMX19_00527 0.28 +0.1 537,266 - MPMX19_00527 0.28 -2.3 537,266 - MPMX19_00527 0.28 -0.9 537,266 - MPMX19_00527 0.28 +0.6 537,266 - MPMX19_00527 0.28 -0.5 537,266 - MPMX19_00527 0.28 -0.7 537,319 + MPMX19_00527 0.35 -1.7 537,319 + MPMX19_00527 0.35 +0.0 537,319 + MPMX19_00527 0.35 -0.6 537,320 - MPMX19_00527 0.35 -0.0 537,320 - MPMX19_00527 0.35 -1.1 537,320 - MPMX19_00527 0.35 -1.5 537,320 - MPMX19_00527 0.35 +0.5 537,631 + MPMX19_00527 0.78 +0.9 537,631 + MPMX19_00527 0.78 +0.1 537,631 + MPMX19_00527 0.78 -0.9 537,631 + MPMX19_00527 0.78 +0.5 537,632 - MPMX19_00527 0.78 +2.7 537,632 - MPMX19_00527 0.78 -0.6 537,787 + -0.1 537,787 + +0.8 537,788 - -1.5 537,923 + -0.3 537,923 + -1.4 537,923 + +0.3
Or see this region's nucleotide sequence