Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00523 and MPMX19_00524 are separated by 106 nucleotides MPMX19_00524 and MPMX19_00525 are separated by 196 nucleotides MPMX19_00525 and MPMX19_00526 are separated by 376 nucleotides
MPMX19_00523: MPMX19_00523 - hypothetical protein, at 531,429 to 532,019
_00523
MPMX19_00524: MPMX19_00524 - Lipoprotein signal peptidase, at 532,126 to 532,641
_00524
MPMX19_00525: MPMX19_00525 - Isoleucine--tRNA ligase, at 532,838 to 535,681
_00525
MPMX19_00526: MPMX19_00526 - hypothetical protein, at 536,058 to 537,035
_00526
Position (kb) 532
533
534
535
536 Strain fitness (log2 ratio) -2
-1
0
1
2 at 532.051 kb on - strand at 532.051 kb on - strand at 532.051 kb on - strand at 532.101 kb on + strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.725 kb on - strand at 532.813 kb on - strand at 535.706 kb on - strand at 535.706 kb on - strand at 535.706 kb on - strand at 535.781 kb on - strand at 535.781 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.854 kb on - strand at 535.984 kb on + strand at 535.984 kb on + strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.985 kb on - strand at 535.986 kb on - strand at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.454 kb on + strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.455 kb on - strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.469 kb on + strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.470 kb on - strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.499 kb on + strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.500 kb on - strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.577 kb on + strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526 at 536.578 kb on - strand, within MPMX19_00526
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 532,051 - +0.3 532,051 - +0.3 532,051 - +1.1 532,101 + -1.4 532,102 - +1.0 532,102 - +0.7 532,102 - -0.9 532,102 - -0.5 532,102 - +0.5 532,102 - -1.3 532,104 - -0.3 532,104 - -1.3 532,104 - +1.4 532,104 - -1.7 532,104 - +0.1 532,104 - -0.7 532,104 - -1.8 532,128 - -0.7 532,128 - +0.2 532,128 - -0.0 532,128 - +0.3 532,128 - -0.6 532,128 - -0.8 532,638 - -0.5 532,638 - -0.0 532,638 - -0.0 532,638 - -2.3 532,638 - -0.3 532,638 - -0.6 532,638 - -1.3 532,638 - -1.9 532,638 - -1.1 532,638 - +0.7 532,638 - +0.7 532,638 - +0.6 532,638 - -0.7 532,638 - +0.1 532,638 - +0.0 532,638 - -0.5 532,638 - -0.3 532,638 - -1.1 532,638 - +0.3 532,638 - -2.1 532,638 - -0.7 532,638 - +0.3 532,638 - -0.6 532,638 - -0.5 532,638 - -0.3 532,638 - +0.6 532,638 - -1.1 532,638 - -0.9 532,638 - +0.1 532,638 - -1.1 532,638 - -0.2 532,638 - -1.1 532,638 - +0.1 532,638 - -0.5 532,638 - +0.3 532,638 - +0.0 532,725 - -2.1 532,813 - -1.5 535,706 - -2.3 535,706 - -1.4 535,706 - +2.1 535,781 - -2.0 535,781 - -1.0 535,854 - -0.3 535,854 - +0.3 535,854 - +0.1 535,984 + -0.7 535,984 + -1.0 535,985 - -1.8 535,985 - -0.2 535,985 - -0.2 535,985 - -0.5 535,985 - -0.3 535,985 - -0.0 535,985 - -1.7 535,985 - -1.7 535,985 - -0.5 535,986 - +0.4 536,454 + MPMX19_00526 0.40 -0.7 536,454 + MPMX19_00526 0.40 -0.8 536,454 + MPMX19_00526 0.40 +0.5 536,454 + MPMX19_00526 0.40 -1.3 536,454 + MPMX19_00526 0.40 -0.5 536,454 + MPMX19_00526 0.40 +0.3 536,454 + MPMX19_00526 0.40 -0.5 536,455 - MPMX19_00526 0.41 -0.7 536,455 - MPMX19_00526 0.41 +1.4 536,455 - MPMX19_00526 0.41 -1.3 536,455 - MPMX19_00526 0.41 -0.7 536,455 - MPMX19_00526 0.41 -0.5 536,455 - MPMX19_00526 0.41 -0.6 536,455 - MPMX19_00526 0.41 +0.7 536,455 - MPMX19_00526 0.41 -0.9 536,455 - MPMX19_00526 0.41 +0.5 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 -0.3 536,469 + MPMX19_00526 0.42 -1.8 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 -1.1 536,469 + MPMX19_00526 0.42 -0.7 536,469 + MPMX19_00526 0.42 +0.8 536,469 + MPMX19_00526 0.42 +0.1 536,469 + MPMX19_00526 0.42 -1.2 536,469 + MPMX19_00526 0.42 -0.3 536,469 + MPMX19_00526 0.42 -0.8 536,469 + MPMX19_00526 0.42 -1.6 536,469 + MPMX19_00526 0.42 -0.6 536,469 + MPMX19_00526 0.42 -0.5 536,469 + MPMX19_00526 0.42 +0.7 536,470 - MPMX19_00526 0.42 -0.4 536,470 - MPMX19_00526 0.42 +0.4 536,470 - MPMX19_00526 0.42 -1.1 536,470 - MPMX19_00526 0.42 +1.2 536,470 - MPMX19_00526 0.42 -2.0 536,470 - MPMX19_00526 0.42 -1.5 536,470 - MPMX19_00526 0.42 -0.3 536,470 - MPMX19_00526 0.42 -1.1 536,470 - MPMX19_00526 0.42 +1.0 536,470 - MPMX19_00526 0.42 +0.3 536,470 - MPMX19_00526 0.42 +0.5 536,470 - MPMX19_00526 0.42 +0.0 536,470 - MPMX19_00526 0.42 -0.9 536,499 + MPMX19_00526 0.45 -0.0 536,499 + MPMX19_00526 0.45 +0.3 536,500 - MPMX19_00526 0.45 -0.1 536,500 - MPMX19_00526 0.45 +1.1 536,500 - MPMX19_00526 0.45 -0.7 536,500 - MPMX19_00526 0.45 -0.2 536,500 - MPMX19_00526 0.45 -0.6 536,500 - MPMX19_00526 0.45 +0.6 536,577 + MPMX19_00526 0.53 -0.9 536,577 + MPMX19_00526 0.53 -2.2 536,577 + MPMX19_00526 0.53 -0.2 536,578 - MPMX19_00526 0.53 -0.5 536,578 - MPMX19_00526 0.53 +0.5 536,578 - MPMX19_00526 0.53 +0.5 536,578 - MPMX19_00526 0.53 -0.3 536,578 - MPMX19_00526 0.53 -0.5 536,578 - MPMX19_00526 0.53 -1.8 536,578 - MPMX19_00526 0.53 -1.8 536,578 - MPMX19_00526 0.53 -0.3
Or see this region's nucleotide sequence