Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00522 and MPMX19_00523 are separated by 114 nucleotides MPMX19_00523 and MPMX19_00524 are separated by 106 nucleotides MPMX19_00524 and MPMX19_00525 are separated by 196 nucleotides
MPMX19_00522: MPMX19_00522 - putative zinc protease, at 529,905 to 531,314
_00522
MPMX19_00523: MPMX19_00523 - hypothetical protein, at 531,429 to 532,019
_00523
MPMX19_00524: MPMX19_00524 - Lipoprotein signal peptidase, at 532,126 to 532,641
_00524
MPMX19_00525: MPMX19_00525 - Isoleucine--tRNA ligase, at 532,838 to 535,681
_00525
Position (kb) 531
532
533 Strain fitness (log2 ratio) -2
-1
0
1 at 530.554 kb on + strand, within MPMX19_00522 at 530.554 kb on + strand, within MPMX19_00522 at 530.555 kb on - strand, within MPMX19_00522 at 530.555 kb on - strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.557 kb on + strand, within MPMX19_00522 at 530.558 kb on - strand, within MPMX19_00522 at 530.558 kb on - strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.632 kb on + strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.633 kb on - strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.644 kb on + strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.645 kb on - strand, within MPMX19_00522 at 530.821 kb on + strand, within MPMX19_00522 at 530.911 kb on + strand, within MPMX19_00522 at 530.911 kb on + strand, within MPMX19_00522 at 530.911 kb on + strand, within MPMX19_00522 at 530.911 kb on + strand, within MPMX19_00522 at 530.911 kb on + strand, within MPMX19_00522 at 530.912 kb on - strand, within MPMX19_00522 at 530.912 kb on - strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.914 kb on + strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.915 kb on - strand, within MPMX19_00522 at 530.923 kb on + strand, within MPMX19_00522 at 530.923 kb on + strand, within MPMX19_00522 at 530.924 kb on - strand, within MPMX19_00522 at 530.924 kb on - strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.929 kb on + strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 530.930 kb on - strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.082 kb on + strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.083 kb on - strand, within MPMX19_00522 at 531.430 kb on + strand at 531.430 kb on + strand at 531.430 kb on + strand at 531.430 kb on + strand at 531.430 kb on + strand at 531.431 kb on - strand at 531.431 kb on - strand at 531.431 kb on - strand at 531.431 kb on - strand at 532.051 kb on - strand at 532.051 kb on - strand at 532.051 kb on - strand at 532.101 kb on + strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.102 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.104 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.128 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.638 kb on - strand at 532.725 kb on - strand at 532.813 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 530,554 + MPMX19_00522 0.46 +0.7 530,554 + MPMX19_00522 0.46 -0.6 530,555 - MPMX19_00522 0.46 -0.1 530,555 - MPMX19_00522 0.46 -0.9 530,557 + MPMX19_00522 0.46 -0.2 530,557 + MPMX19_00522 0.46 +0.1 530,557 + MPMX19_00522 0.46 -0.4 530,557 + MPMX19_00522 0.46 -0.6 530,557 + MPMX19_00522 0.46 -1.3 530,557 + MPMX19_00522 0.46 -0.9 530,557 + MPMX19_00522 0.46 +0.2 530,558 - MPMX19_00522 0.46 +0.5 530,558 - MPMX19_00522 0.46 -1.1 530,632 + MPMX19_00522 0.52 -1.3 530,632 + MPMX19_00522 0.52 -0.5 530,632 + MPMX19_00522 0.52 -1.3 530,632 + MPMX19_00522 0.52 +0.3 530,632 + MPMX19_00522 0.52 -0.7 530,632 + MPMX19_00522 0.52 -0.6 530,632 + MPMX19_00522 0.52 +1.1 530,632 + MPMX19_00522 0.52 -0.6 530,632 + MPMX19_00522 0.52 -0.0 530,632 + MPMX19_00522 0.52 -0.6 530,632 + MPMX19_00522 0.52 -1.2 530,632 + MPMX19_00522 0.52 -1.4 530,633 - MPMX19_00522 0.52 -0.4 530,633 - MPMX19_00522 0.52 -0.7 530,633 - MPMX19_00522 0.52 +0.3 530,633 - MPMX19_00522 0.52 +0.1 530,633 - MPMX19_00522 0.52 -0.3 530,633 - MPMX19_00522 0.52 -0.9 530,633 - MPMX19_00522 0.52 -0.9 530,644 + MPMX19_00522 0.52 +0.3 530,644 + MPMX19_00522 0.52 +0.7 530,644 + MPMX19_00522 0.52 -1.2 530,644 + MPMX19_00522 0.52 -1.8 530,644 + MPMX19_00522 0.52 -1.1 530,644 + MPMX19_00522 0.52 -1.5 530,644 + MPMX19_00522 0.52 -1.0 530,644 + MPMX19_00522 0.52 +1.1 530,645 - MPMX19_00522 0.52 -0.7 530,645 - MPMX19_00522 0.52 +0.5 530,645 - MPMX19_00522 0.52 -0.7 530,645 - MPMX19_00522 0.52 +0.6 530,645 - MPMX19_00522 0.52 +0.3 530,645 - MPMX19_00522 0.52 +1.3 530,645 - MPMX19_00522 0.52 -1.9 530,645 - MPMX19_00522 0.52 -0.2 530,645 - MPMX19_00522 0.52 -1.4 530,645 - MPMX19_00522 0.52 -1.4 530,645 - MPMX19_00522 0.52 -0.3 530,645 - MPMX19_00522 0.52 -0.5 530,821 + MPMX19_00522 0.65 -1.7 530,911 + MPMX19_00522 0.71 -2.1 530,911 + MPMX19_00522 0.71 -1.5 530,911 + MPMX19_00522 0.71 +1.5 530,911 + MPMX19_00522 0.71 -1.1 530,911 + MPMX19_00522 0.71 -1.1 530,912 - MPMX19_00522 0.71 -0.9 530,912 - MPMX19_00522 0.71 -0.3 530,914 + MPMX19_00522 0.72 +0.5 530,914 + MPMX19_00522 0.72 -1.7 530,914 + MPMX19_00522 0.72 -0.3 530,914 + MPMX19_00522 0.72 -0.7 530,914 + MPMX19_00522 0.72 -2.0 530,914 + MPMX19_00522 0.72 -0.4 530,914 + MPMX19_00522 0.72 -1.7 530,914 + MPMX19_00522 0.72 +0.5 530,914 + MPMX19_00522 0.72 -0.5 530,914 + MPMX19_00522 0.72 -1.1 530,914 + MPMX19_00522 0.72 -0.1 530,915 - MPMX19_00522 0.72 +0.1 530,915 - MPMX19_00522 0.72 -1.3 530,915 - MPMX19_00522 0.72 -1.3 530,915 - MPMX19_00522 0.72 +0.0 530,915 - MPMX19_00522 0.72 +0.5 530,915 - MPMX19_00522 0.72 +0.6 530,915 - MPMX19_00522 0.72 -0.5 530,915 - MPMX19_00522 0.72 -0.0 530,923 + MPMX19_00522 0.72 -0.8 530,923 + MPMX19_00522 0.72 -1.6 530,924 - MPMX19_00522 0.72 +0.2 530,924 - MPMX19_00522 0.72 -0.9 530,929 + MPMX19_00522 0.73 -0.4 530,929 + MPMX19_00522 0.73 -1.8 530,929 + MPMX19_00522 0.73 -1.5 530,929 + MPMX19_00522 0.73 -0.5 530,929 + MPMX19_00522 0.73 -0.4 530,929 + MPMX19_00522 0.73 -0.8 530,929 + MPMX19_00522 0.73 -0.7 530,929 + MPMX19_00522 0.73 -1.8 530,929 + MPMX19_00522 0.73 -0.2 530,929 + MPMX19_00522 0.73 +0.3 530,930 - MPMX19_00522 0.73 -0.1 530,930 - MPMX19_00522 0.73 -1.1 530,930 - MPMX19_00522 0.73 -1.4 530,930 - MPMX19_00522 0.73 -0.0 530,930 - MPMX19_00522 0.73 +1.0 530,930 - MPMX19_00522 0.73 +0.7 531,082 + MPMX19_00522 0.83 -0.4 531,082 + MPMX19_00522 0.83 +1.3 531,082 + MPMX19_00522 0.83 +0.4 531,082 + MPMX19_00522 0.83 -0.5 531,082 + MPMX19_00522 0.83 -2.2 531,082 + MPMX19_00522 0.83 -1.5 531,082 + MPMX19_00522 0.83 -1.4 531,082 + MPMX19_00522 0.83 +0.3 531,082 + MPMX19_00522 0.83 -1.2 531,082 + MPMX19_00522 0.83 -2.1 531,082 + MPMX19_00522 0.83 -1.3 531,083 - MPMX19_00522 0.84 -0.4 531,083 - MPMX19_00522 0.84 -0.9 531,083 - MPMX19_00522 0.84 -0.3 531,083 - MPMX19_00522 0.84 -2.1 531,083 - MPMX19_00522 0.84 -1.7 531,083 - MPMX19_00522 0.84 -0.5 531,430 + -1.3 531,430 + +0.5 531,430 + +0.3 531,430 + -2.3 531,430 + +0.7 531,431 - -1.3 531,431 - -0.8 531,431 - -1.1 531,431 - -1.0 532,051 - +0.3 532,051 - +0.3 532,051 - +1.1 532,101 + -1.4 532,102 - +1.0 532,102 - +0.7 532,102 - -0.9 532,102 - -0.5 532,102 - +0.5 532,102 - -1.3 532,104 - -0.3 532,104 - -1.3 532,104 - +1.4 532,104 - -1.7 532,104 - +0.1 532,104 - -0.7 532,104 - -1.8 532,128 - -0.7 532,128 - +0.2 532,128 - -0.0 532,128 - +0.3 532,128 - -0.6 532,128 - -0.8 532,638 - -0.5 532,638 - -0.0 532,638 - -0.0 532,638 - -2.3 532,638 - -0.3 532,638 - -0.6 532,638 - -1.3 532,638 - -1.9 532,638 - -1.1 532,638 - +0.7 532,638 - +0.7 532,638 - +0.6 532,638 - -0.7 532,638 - +0.1 532,638 - +0.0 532,638 - -0.5 532,638 - -0.3 532,638 - -1.1 532,638 - +0.3 532,638 - -2.1 532,638 - -0.7 532,638 - +0.3 532,638 - -0.6 532,638 - -0.5 532,638 - -0.3 532,638 - +0.6 532,638 - -1.1 532,638 - -0.9 532,638 - +0.1 532,638 - -1.1 532,638 - -0.2 532,638 - -1.1 532,638 - +0.1 532,638 - -0.5 532,638 - +0.3 532,638 - +0.0 532,725 - -2.1 532,813 - -1.5
Or see this region's nucleotide sequence