Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00517 and MPMX19_00518 are separated by 4 nucleotides MPMX19_00518 and MPMX19_00519 are separated by 151 nucleotides MPMX19_00519 and MPMX19_00520 are separated by 337 nucleotides
MPMX19_00517: MPMX19_00517 - HTH-type transcriptional activator AmpR, at 524,332 to 525,222
_00517
MPMX19_00518: MPMX19_00518 - hypothetical protein, at 525,227 to 525,478
_00518
MPMX19_00519: MPMX19_00519 - Glucose-6-phosphate isomerase, at 525,630 to 527,294
_00519
MPMX19_00520: MPMX19_00520 - hypothetical protein, at 527,632 to 528,324
_00520
Position (kb) 525
526
527
528 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.758 kb on + strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.759 kb on - strand, within MPMX19_00517 at 524.905 kb on + strand, within MPMX19_00517 at 524.906 kb on - strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.124 kb on + strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.125 kb on - strand, within MPMX19_00517 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.444 kb on + strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.445 kb on - strand, within MPMX19_00518 at 525.464 kb on + strand at 525.464 kb on + strand at 525.464 kb on + strand at 525.465 kb on - strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.593 kb on + strand at 525.594 kb on - strand at 525.594 kb on - strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.595 kb on + strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.596 kb on - strand at 525.599 kb on + strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.600 kb on - strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.605 kb on + strand at 525.606 kb on - strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.631 kb on + strand at 525.632 kb on - strand at 525.632 kb on - strand at 527.264 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.362 kb on + strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.363 kb on - strand at 527.425 kb on - strand at 527.517 kb on + strand at 527.517 kb on + strand at 527.518 kb on - strand at 527.611 kb on + strand at 527.615 kb on - strand at 527.618 kb on + strand at 527.619 kb on - strand at 527.619 kb on - strand at 527.619 kb on - strand at 527.632 kb on - strand at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.830 kb on + strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.831 kb on - strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.857 kb on + strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.858 kb on - strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.923 kb on + strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.924 kb on - strand, within MPMX19_00520 at 527.941 kb on + strand, within MPMX19_00520 at 527.941 kb on + strand, within MPMX19_00520 at 527.942 kb on - strand, within MPMX19_00520 at 527.942 kb on - strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.013 kb on + strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.014 kb on - strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.037 kb on + strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.038 kb on - strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.214 kb on + strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520 at 528.215 kb on - strand, within MPMX19_00520
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 524,758 + MPMX19_00517 0.48 +1.5 524,758 + MPMX19_00517 0.48 +0.3 524,758 + MPMX19_00517 0.48 -1.2 524,758 + MPMX19_00517 0.48 -1.2 524,758 + MPMX19_00517 0.48 -1.4 524,758 + MPMX19_00517 0.48 +0.3 524,758 + MPMX19_00517 0.48 -1.4 524,758 + MPMX19_00517 0.48 -0.1 524,758 + MPMX19_00517 0.48 +0.3 524,759 - MPMX19_00517 0.48 +0.4 524,759 - MPMX19_00517 0.48 -0.9 524,905 + MPMX19_00517 0.64 -2.4 524,906 - MPMX19_00517 0.64 +0.1 525,124 + MPMX19_00517 0.89 -2.0 525,124 + MPMX19_00517 0.89 -0.4 525,124 + MPMX19_00517 0.89 +0.7 525,125 - MPMX19_00517 0.89 -0.7 525,125 - MPMX19_00517 0.89 -0.2 525,125 - MPMX19_00517 0.89 -0.4 525,125 - MPMX19_00517 0.89 +0.1 525,444 + MPMX19_00518 0.86 -1.4 525,444 + MPMX19_00518 0.86 -0.5 525,444 + MPMX19_00518 0.86 -0.0 525,444 + MPMX19_00518 0.86 -1.8 525,444 + MPMX19_00518 0.86 +0.5 525,444 + MPMX19_00518 0.86 -0.9 525,444 + MPMX19_00518 0.86 +0.3 525,444 + MPMX19_00518 0.86 -0.4 525,445 - MPMX19_00518 0.87 -0.1 525,445 - MPMX19_00518 0.87 -0.2 525,445 - MPMX19_00518 0.87 -0.5 525,445 - MPMX19_00518 0.87 -0.0 525,445 - MPMX19_00518 0.87 -1.8 525,445 - MPMX19_00518 0.87 -1.5 525,445 - MPMX19_00518 0.87 -0.2 525,445 - MPMX19_00518 0.87 +0.6 525,464 + -0.5 525,464 + -0.7 525,464 + -0.7 525,465 - +0.9 525,593 + +0.5 525,593 + +0.5 525,593 + -0.4 525,593 + +0.3 525,594 - -0.7 525,594 - +0.1 525,595 + -0.6 525,595 + -1.2 525,595 + -1.6 525,595 + +0.2 525,595 + -0.5 525,595 + -1.4 525,595 + -2.1 525,595 + -0.4 525,595 + -0.5 525,595 + -1.5 525,595 + -0.1 525,595 + -0.5 525,595 + +1.3 525,595 + -1.4 525,595 + -1.6 525,595 + -0.7 525,595 + -0.1 525,595 + -1.1 525,595 + +0.8 525,595 + -0.4 525,595 + -0.7 525,595 + +0.1 525,595 + +0.3 525,596 - -0.2 525,596 - +1.1 525,596 - -0.5 525,596 - -0.4 525,596 - -0.4 525,596 - -1.6 525,596 - +0.2 525,596 - +0.8 525,596 - -0.1 525,596 - +0.2 525,596 - -0.4 525,596 - -0.2 525,596 - +0.1 525,596 - -0.7 525,596 - -1.1 525,596 - +0.3 525,596 - -0.2 525,596 - +0.1 525,596 - -1.2 525,596 - -2.3 525,596 - -0.4 525,596 - -0.9 525,596 - +0.7 525,596 - -0.5 525,596 - +0.5 525,596 - +1.4 525,599 + -2.9 525,600 - +0.1 525,600 - +0.1 525,600 - -0.3 525,600 - -1.4 525,600 - -0.6 525,600 - -0.5 525,605 + -0.9 525,605 + -0.8 525,605 + -0.4 525,606 - +1.4 525,631 + -0.8 525,631 + -0.7 525,631 + +0.7 525,632 - -1.2 525,632 - -1.2 527,264 + +0.5 527,362 + +1.1 527,362 + -0.5 527,362 + -1.1 527,362 + +0.5 527,362 + -0.7 527,362 + -1.1 527,363 - -0.8 527,363 - -2.0 527,363 - +0.7 527,363 - -1.6 527,363 - -0.4 527,363 - -2.1 527,363 - +0.6 527,363 - +0.1 527,363 - -1.6 527,363 - +0.1 527,363 - -2.5 527,363 - +0.9 527,363 - -1.1 527,363 - +1.3 527,363 - -2.1 527,363 - -2.8 527,425 - +0.1 527,517 + +0.3 527,517 + -1.7 527,518 - -0.5 527,611 + -1.6 527,615 - +1.1 527,618 + +0.6 527,619 - +0.3 527,619 - +1.1 527,619 - -0.3 527,632 - +0.1 527,830 + MPMX19_00520 0.29 +0.1 527,830 + MPMX19_00520 0.29 +0.1 527,830 + MPMX19_00520 0.29 -0.7 527,830 + MPMX19_00520 0.29 -0.1 527,831 - MPMX19_00520 0.29 +0.6 527,831 - MPMX19_00520 0.29 -0.7 527,831 - MPMX19_00520 0.29 -0.1 527,831 - MPMX19_00520 0.29 +0.3 527,831 - MPMX19_00520 0.29 +1.3 527,831 - MPMX19_00520 0.29 -1.5 527,831 - MPMX19_00520 0.29 -0.0 527,857 + MPMX19_00520 0.32 -1.9 527,857 + MPMX19_00520 0.32 -0.9 527,857 + MPMX19_00520 0.32 +0.5 527,857 + MPMX19_00520 0.32 -0.0 527,857 + MPMX19_00520 0.32 -0.4 527,857 + MPMX19_00520 0.32 -1.7 527,857 + MPMX19_00520 0.32 +0.3 527,857 + MPMX19_00520 0.32 -0.9 527,857 + MPMX19_00520 0.32 -1.5 527,858 - MPMX19_00520 0.33 +0.3 527,858 - MPMX19_00520 0.33 +1.9 527,858 - MPMX19_00520 0.33 -1.1 527,858 - MPMX19_00520 0.33 -0.4 527,858 - MPMX19_00520 0.33 -0.4 527,858 - MPMX19_00520 0.33 -0.2 527,923 + MPMX19_00520 0.42 -1.4 527,923 + MPMX19_00520 0.42 -0.1 527,923 + MPMX19_00520 0.42 -0.5 527,923 + MPMX19_00520 0.42 +0.9 527,923 + MPMX19_00520 0.42 +1.3 527,924 - MPMX19_00520 0.42 -0.5 527,924 - MPMX19_00520 0.42 +0.5 527,924 - MPMX19_00520 0.42 -0.8 527,924 - MPMX19_00520 0.42 -0.1 527,924 - MPMX19_00520 0.42 +0.7 527,924 - MPMX19_00520 0.42 +1.5 527,941 + MPMX19_00520 0.45 +1.1 527,941 + MPMX19_00520 0.45 -2.3 527,942 - MPMX19_00520 0.45 +0.4 527,942 - MPMX19_00520 0.45 -2.0 528,013 + MPMX19_00520 0.55 -1.1 528,013 + MPMX19_00520 0.55 +1.2 528,013 + MPMX19_00520 0.55 -0.7 528,013 + MPMX19_00520 0.55 -0.1 528,013 + MPMX19_00520 0.55 +1.1 528,013 + MPMX19_00520 0.55 -0.7 528,013 + MPMX19_00520 0.55 -1.8 528,014 - MPMX19_00520 0.55 +0.2 528,014 - MPMX19_00520 0.55 -0.2 528,014 - MPMX19_00520 0.55 -1.5 528,014 - MPMX19_00520 0.55 +1.5 528,037 + MPMX19_00520 0.58 +0.5 528,037 + MPMX19_00520 0.58 -0.7 528,037 + MPMX19_00520 0.58 +0.1 528,037 + MPMX19_00520 0.58 -1.5 528,037 + MPMX19_00520 0.58 -1.2 528,037 + MPMX19_00520 0.58 -1.1 528,038 - MPMX19_00520 0.59 +0.9 528,038 - MPMX19_00520 0.59 -0.7 528,038 - MPMX19_00520 0.59 -0.6 528,038 - MPMX19_00520 0.59 +0.8 528,038 - MPMX19_00520 0.59 -0.9 528,038 - MPMX19_00520 0.59 -0.2 528,038 - MPMX19_00520 0.59 +0.1 528,038 - MPMX19_00520 0.59 -1.0 528,038 - MPMX19_00520 0.59 -0.3 528,038 - MPMX19_00520 0.59 -1.1 528,038 - MPMX19_00520 0.59 -0.6 528,214 + MPMX19_00520 0.84 -0.5 528,214 + MPMX19_00520 0.84 +0.5 528,214 + MPMX19_00520 0.84 -0.7 528,214 + MPMX19_00520 0.84 -1.5 528,214 + MPMX19_00520 0.84 -1.7 528,215 - MPMX19_00520 0.84 -1.1 528,215 - MPMX19_00520 0.84 +0.5 528,215 - MPMX19_00520 0.84 +0.7 528,215 - MPMX19_00520 0.84 +0.9 528,215 - MPMX19_00520 0.84 -0.2 528,215 - MPMX19_00520 0.84 -1.5 528,215 - MPMX19_00520 0.84 -0.2 528,215 - MPMX19_00520 0.84 -0.1 528,215 - MPMX19_00520 0.84 -0.1 528,215 - MPMX19_00520 0.84 -0.8
Or see this region's nucleotide sequence