Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00471 and MPMX19_00472 are separated by 71 nucleotides MPMX19_00472 and MPMX19_00473 are separated by 312 nucleotides MPMX19_00473 and MPMX19_00474 are separated by 193 nucleotides
MPMX19_00471: MPMX19_00471 - hypothetical protein, at 469,857 to 470,780
_00471
MPMX19_00472: MPMX19_00472 - Protein HesB, heterocyst, at 470,852 to 471,247
_00472
MPMX19_00473: MPMX19_00473 - hypothetical protein, at 471,560 to 472,072
_00473
MPMX19_00474: MPMX19_00474 - N-ethylmaleimide reductase, at 472,266 to 473,396
_00474
Position (kb) 471
472
473 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 470.770 kb on + strand at 470.770 kb on + strand at 470.770 kb on + strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.771 kb on - strand at 470.865 kb on + strand at 470.865 kb on + strand at 470.865 kb on + strand at 470.866 kb on - strand at 470.866 kb on - strand at 470.866 kb on - strand at 470.866 kb on - strand at 471.129 kb on + strand, within MPMX19_00472 at 471.129 kb on + strand, within MPMX19_00472 at 471.129 kb on + strand, within MPMX19_00472 at 471.129 kb on + strand, within MPMX19_00472 at 471.129 kb on + strand, within MPMX19_00472 at 471.130 kb on - strand, within MPMX19_00472 at 471.130 kb on - strand, within MPMX19_00472 at 471.301 kb on + strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.302 kb on - strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.490 kb on + strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.491 kb on - strand at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.737 kb on + strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.738 kb on - strand, within MPMX19_00473 at 471.746 kb on + strand, within MPMX19_00473 at 471.747 kb on - strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.755 kb on + strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 471.756 kb on - strand, within MPMX19_00473 at 472.087 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.303 kb on + strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.304 kb on - strand at 472.324 kb on + strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.325 kb on - strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.327 kb on + strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.328 kb on - strand at 472.498 kb on + strand, within MPMX19_00474 at 472.498 kb on + strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.499 kb on - strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.585 kb on + strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.586 kb on - strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.774 kb on + strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.775 kb on - strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.825 kb on + strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.826 kb on - strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.975 kb on + strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474 at 472.976 kb on - strand, within MPMX19_00474
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 470,770 + +0.3 470,770 + +0.2 470,770 + -0.5 470,771 - -0.0 470,771 - +0.7 470,771 - -0.9 470,771 - -0.4 470,771 - -0.5 470,771 - -0.6 470,771 - -1.2 470,771 - -0.5 470,865 + -2.3 470,865 + +1.6 470,865 + -0.1 470,866 - -0.8 470,866 - -0.9 470,866 - -0.2 470,866 - -1.6 471,129 + MPMX19_00472 0.70 +0.1 471,129 + MPMX19_00472 0.70 -0.6 471,129 + MPMX19_00472 0.70 -0.5 471,129 + MPMX19_00472 0.70 -0.7 471,129 + MPMX19_00472 0.70 +0.9 471,130 - MPMX19_00472 0.70 +0.4 471,130 - MPMX19_00472 0.70 +2.1 471,301 + -1.3 471,302 - +1.1 471,302 - +0.9 471,302 - -0.1 471,302 - +0.1 471,490 + +0.3 471,490 + +0.6 471,490 + -0.6 471,490 + -0.5 471,490 + +0.1 471,490 + -0.2 471,491 - -0.5 471,491 - -1.7 471,491 - -0.8 471,491 - +1.0 471,491 - -0.5 471,491 - -0.5 471,491 - +0.8 471,491 - -0.5 471,491 - +0.1 471,737 + MPMX19_00473 0.35 +0.5 471,737 + MPMX19_00473 0.35 +0.1 471,737 + MPMX19_00473 0.35 +0.2 471,738 - MPMX19_00473 0.35 -0.2 471,738 - MPMX19_00473 0.35 +0.1 471,738 - MPMX19_00473 0.35 -0.5 471,746 + MPMX19_00473 0.36 +0.0 471,747 - MPMX19_00473 0.36 -1.7 471,755 + MPMX19_00473 0.38 -1.5 471,755 + MPMX19_00473 0.38 -0.0 471,755 + MPMX19_00473 0.38 +0.1 471,755 + MPMX19_00473 0.38 -0.5 471,755 + MPMX19_00473 0.38 -1.2 471,755 + MPMX19_00473 0.38 +0.5 471,756 - MPMX19_00473 0.38 -0.6 471,756 - MPMX19_00473 0.38 -2.0 471,756 - MPMX19_00473 0.38 +0.4 472,087 + -0.2 472,303 + +0.7 472,303 + -2.8 472,303 + -0.7 472,304 - -1.1 472,304 - -0.1 472,304 - -1.2 472,324 + -1.7 472,325 - -1.0 472,325 - -0.2 472,325 - -0.8 472,327 + -0.2 472,327 + -1.5 472,327 + -1.0 472,327 + -0.2 472,327 + -1.4 472,327 + +1.3 472,327 + -1.8 472,327 + -0.6 472,327 + -1.1 472,327 + +0.8 472,327 + -0.8 472,327 + +0.1 472,327 + -1.1 472,327 + +1.1 472,327 + -0.6 472,327 + +0.3 472,327 + -1.2 472,327 + +0.4 472,327 + +0.9 472,327 + -1.2 472,327 + +0.3 472,327 + -1.2 472,327 + -0.3 472,327 + -0.2 472,327 + +0.2 472,327 + +0.5 472,327 + -3.2 472,327 + -0.7 472,328 - -0.0 472,328 - -0.4 472,328 - -1.2 472,328 - -2.3 472,328 - -1.5 472,328 - +0.7 472,328 - -0.7 472,328 - +0.0 472,328 - -0.4 472,328 - -0.8 472,328 - -1.8 472,328 - +0.0 472,328 - +0.1 472,328 - -0.2 472,328 - -0.6 472,328 - -2.8 472,328 - +1.5 472,328 - +0.4 472,328 - -0.5 472,328 - +0.1 472,328 - -1.1 472,328 - -2.0 472,328 - -1.2 472,328 - -1.1 472,328 - -0.0 472,328 - +0.3 472,328 - +0.8 472,328 - -2.5 472,328 - -0.8 472,328 - -0.3 472,498 + MPMX19_00474 0.21 +0.5 472,498 + MPMX19_00474 0.21 -0.7 472,499 - MPMX19_00474 0.21 -1.2 472,499 - MPMX19_00474 0.21 +0.3 472,499 - MPMX19_00474 0.21 -0.4 472,499 - MPMX19_00474 0.21 -2.3 472,499 - MPMX19_00474 0.21 -0.1 472,585 + MPMX19_00474 0.28 -2.5 472,585 + MPMX19_00474 0.28 +0.1 472,585 + MPMX19_00474 0.28 -1.4 472,585 + MPMX19_00474 0.28 -0.9 472,585 + MPMX19_00474 0.28 +1.2 472,585 + MPMX19_00474 0.28 -0.7 472,585 + MPMX19_00474 0.28 +0.4 472,585 + MPMX19_00474 0.28 -0.7 472,585 + MPMX19_00474 0.28 +0.3 472,586 - MPMX19_00474 0.28 -0.5 472,586 - MPMX19_00474 0.28 +0.3 472,586 - MPMX19_00474 0.28 -0.2 472,586 - MPMX19_00474 0.28 +0.1 472,586 - MPMX19_00474 0.28 -1.2 472,586 - MPMX19_00474 0.28 -0.2 472,586 - MPMX19_00474 0.28 -1.8 472,774 + MPMX19_00474 0.45 -1.4 472,774 + MPMX19_00474 0.45 -0.6 472,774 + MPMX19_00474 0.45 -0.6 472,775 - MPMX19_00474 0.45 -0.6 472,775 - MPMX19_00474 0.45 -0.5 472,775 - MPMX19_00474 0.45 -1.6 472,775 - MPMX19_00474 0.45 +0.5 472,775 - MPMX19_00474 0.45 -0.5 472,825 + MPMX19_00474 0.49 -0.2 472,825 + MPMX19_00474 0.49 -0.5 472,825 + MPMX19_00474 0.49 -2.6 472,825 + MPMX19_00474 0.49 -0.3 472,826 - MPMX19_00474 0.50 -1.2 472,826 - MPMX19_00474 0.50 -0.9 472,975 + MPMX19_00474 0.63 +0.1 472,975 + MPMX19_00474 0.63 +0.1 472,975 + MPMX19_00474 0.63 -0.5 472,975 + MPMX19_00474 0.63 +0.5 472,975 + MPMX19_00474 0.63 -0.7 472,975 + MPMX19_00474 0.63 -2.4 472,975 + MPMX19_00474 0.63 -1.1 472,975 + MPMX19_00474 0.63 -0.2 472,975 + MPMX19_00474 0.63 -1.6 472,975 + MPMX19_00474 0.63 +0.1 472,975 + MPMX19_00474 0.63 +0.5 472,975 + MPMX19_00474 0.63 -0.9 472,976 - MPMX19_00474 0.63 -0.4 472,976 - MPMX19_00474 0.63 +1.5 472,976 - MPMX19_00474 0.63 -1.7 472,976 - MPMX19_00474 0.63 +0.7 472,976 - MPMX19_00474 0.63 -0.6 472,976 - MPMX19_00474 0.63 +1.1 472,976 - MPMX19_00474 0.63 -1.1 472,976 - MPMX19_00474 0.63 +0.2 472,976 - MPMX19_00474 0.63 -0.9 472,976 - MPMX19_00474 0.63 -1.8 472,976 - MPMX19_00474 0.63 -2.6 472,976 - MPMX19_00474 0.63 +0.4
Or see this region's nucleotide sequence