Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00416 and MPMX19_00417 are separated by 119 nucleotides MPMX19_00417 and MPMX19_00418 are separated by 6 nucleotides MPMX19_00418 and MPMX19_00419 are separated by 26 nucleotides
MPMX19_00416: MPMX19_00416 - hypothetical protein, at 415,303 to 416,007
_00416
MPMX19_00417: MPMX19_00417 - hypothetical protein, at 416,127 to 416,984
_00417
MPMX19_00418: MPMX19_00418 - Putative glutamate--cysteine ligase 2, at 416,991 to 418,166
_00418
MPMX19_00419: MPMX19_00419 - Fe(3+) ions import ATP-binding protein FbpC 2, at 418,193 to 419,275
_00419
Position (kb) 416
417
418
419 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 416.054 kb on + strand at 416.054 kb on + strand at 416.054 kb on + strand at 416.055 kb on - strand at 416.055 kb on - strand at 416.055 kb on - strand at 416.074 kb on + strand at 416.074 kb on + strand at 416.075 kb on - strand at 416.075 kb on - strand at 416.075 kb on - strand at 416.116 kb on + strand at 416.116 kb on + strand at 416.116 kb on + strand at 416.117 kb on - strand at 416.117 kb on - strand at 416.117 kb on - strand at 416.117 kb on - strand at 416.126 kb on + strand at 416.126 kb on + strand at 416.126 kb on + strand at 416.126 kb on + strand at 416.126 kb on + strand at 416.126 kb on + strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.127 kb on - strand at 416.352 kb on + strand, within MPMX19_00417 at 416.352 kb on + strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.353 kb on - strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.568 kb on + strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.569 kb on - strand, within MPMX19_00417 at 416.781 kb on + strand, within MPMX19_00417 at 416.781 kb on + strand, within MPMX19_00417 at 416.781 kb on + strand, within MPMX19_00417 at 416.781 kb on + strand, within MPMX19_00417 at 416.782 kb on - strand, within MPMX19_00417 at 416.782 kb on - strand, within MPMX19_00417 at 416.782 kb on - strand, within MPMX19_00417 at 416.782 kb on - strand, within MPMX19_00417 at 416.782 kb on - strand, within MPMX19_00417 at 416.970 kb on + strand at 416.971 kb on - strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.042 kb on + strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.043 kb on - strand at 417.330 kb on + strand, within MPMX19_00418 at 417.330 kb on + strand, within MPMX19_00418 at 417.330 kb on + strand, within MPMX19_00418 at 417.330 kb on + strand, within MPMX19_00418 at 417.330 kb on + strand, within MPMX19_00418 at 417.330 kb on + strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.331 kb on - strand, within MPMX19_00418 at 417.450 kb on + strand, within MPMX19_00418 at 417.450 kb on + strand, within MPMX19_00418 at 417.450 kb on + strand, within MPMX19_00418 at 417.450 kb on + strand, within MPMX19_00418 at 417.451 kb on - strand, within MPMX19_00418 at 417.451 kb on - strand, within MPMX19_00418 at 417.451 kb on - strand, within MPMX19_00418 at 417.525 kb on + strand, within MPMX19_00418 at 417.526 kb on - strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.585 kb on + strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.586 kb on - strand, within MPMX19_00418 at 417.594 kb on + strand, within MPMX19_00418 at 417.594 kb on + strand, within MPMX19_00418 at 417.595 kb on - strand, within MPMX19_00418 at 417.753 kb on + strand, within MPMX19_00418 at 417.753 kb on + strand, within MPMX19_00418 at 417.753 kb on + strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.754 kb on - strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.813 kb on + strand, within MPMX19_00418 at 417.814 kb on - strand, within MPMX19_00418 at 417.814 kb on - strand, within MPMX19_00418 at 417.814 kb on - strand, within MPMX19_00418 at 417.814 kb on - strand, within MPMX19_00418 at 417.858 kb on + strand, within MPMX19_00418 at 417.858 kb on + strand, within MPMX19_00418 at 417.858 kb on + strand, within MPMX19_00418 at 417.858 kb on + strand, within MPMX19_00418 at 417.859 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.910 kb on - strand, within MPMX19_00418 at 417.999 kb on - strand, within MPMX19_00418 at 418.605 kb on + strand, within MPMX19_00419 at 418.605 kb on + strand, within MPMX19_00419 at 418.606 kb on - strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.028 kb on + strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419 at 419.029 kb on - strand, within MPMX19_00419
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 416,054 + -0.9 416,054 + +1.4 416,054 + +0.1 416,055 - +0.8 416,055 - +0.9 416,055 - +0.9 416,074 + -0.6 416,074 + +1.2 416,075 - -0.0 416,075 - +1.4 416,075 - -0.1 416,116 + +0.2 416,116 + -1.6 416,116 + +0.5 416,117 - +0.1 416,117 - +1.5 416,117 - +0.1 416,117 - +0.5 416,126 + +0.1 416,126 + -1.2 416,126 + -1.1 416,126 + -0.7 416,126 + -0.9 416,126 + +1.1 416,127 - -2.8 416,127 - +0.2 416,127 - -0.2 416,127 - +0.1 416,127 - -1.4 416,127 - +0.1 416,127 - -1.7 416,127 - -1.4 416,127 - +2.4 416,127 - -0.9 416,127 - +0.8 416,127 - -1.3 416,127 - +0.4 416,352 + MPMX19_00417 0.26 -1.2 416,352 + MPMX19_00417 0.26 -0.9 416,353 - MPMX19_00417 0.26 -2.0 416,353 - MPMX19_00417 0.26 -1.4 416,353 - MPMX19_00417 0.26 +1.1 416,353 - MPMX19_00417 0.26 -0.9 416,353 - MPMX19_00417 0.26 -1.1 416,353 - MPMX19_00417 0.26 -0.7 416,568 + MPMX19_00417 0.51 -1.2 416,568 + MPMX19_00417 0.51 -0.2 416,568 + MPMX19_00417 0.51 +0.8 416,568 + MPMX19_00417 0.51 -0.7 416,568 + MPMX19_00417 0.51 +0.1 416,568 + MPMX19_00417 0.51 +0.1 416,569 - MPMX19_00417 0.52 -0.6 416,569 - MPMX19_00417 0.52 +0.7 416,569 - MPMX19_00417 0.52 +0.9 416,569 - MPMX19_00417 0.52 -0.1 416,569 - MPMX19_00417 0.52 -0.7 416,569 - MPMX19_00417 0.52 -1.2 416,569 - MPMX19_00417 0.52 +0.8 416,781 + MPMX19_00417 0.76 -0.2 416,781 + MPMX19_00417 0.76 +0.6 416,781 + MPMX19_00417 0.76 -1.2 416,781 + MPMX19_00417 0.76 +0.9 416,782 - MPMX19_00417 0.76 -0.5 416,782 - MPMX19_00417 0.76 -0.6 416,782 - MPMX19_00417 0.76 +0.0 416,782 - MPMX19_00417 0.76 +0.2 416,782 - MPMX19_00417 0.76 +0.7 416,970 + -0.6 416,971 - -0.1 417,042 + +0.8 417,042 + -0.3 417,042 + -0.1 417,042 + -1.2 417,042 + -0.7 417,042 + +0.5 417,042 + -1.6 417,042 + -1.3 417,042 + -1.3 417,042 + -0.8 417,042 + -2.2 417,042 + +0.2 417,043 - -1.9 417,043 - -0.1 417,043 - +0.2 417,043 - -0.9 417,043 - -1.2 417,043 - -1.0 417,043 - +0.1 417,043 - -0.6 417,043 - -1.4 417,043 - +1.1 417,043 - -1.3 417,043 - +0.2 417,043 - +0.4 417,043 - +0.9 417,043 - -1.1 417,043 - -0.9 417,043 - -0.8 417,043 - -0.3 417,330 + MPMX19_00418 0.29 -1.6 417,330 + MPMX19_00418 0.29 +0.3 417,330 + MPMX19_00418 0.29 -2.2 417,330 + MPMX19_00418 0.29 +0.8 417,330 + MPMX19_00418 0.29 -0.2 417,330 + MPMX19_00418 0.29 +0.6 417,331 - MPMX19_00418 0.29 +0.0 417,331 - MPMX19_00418 0.29 -0.7 417,331 - MPMX19_00418 0.29 +0.0 417,331 - MPMX19_00418 0.29 -1.3 417,331 - MPMX19_00418 0.29 +0.7 417,331 - MPMX19_00418 0.29 -0.2 417,331 - MPMX19_00418 0.29 -1.5 417,331 - MPMX19_00418 0.29 -1.3 417,331 - MPMX19_00418 0.29 -0.7 417,331 - MPMX19_00418 0.29 -1.2 417,450 + MPMX19_00418 0.39 +0.9 417,450 + MPMX19_00418 0.39 +0.2 417,450 + MPMX19_00418 0.39 -1.3 417,450 + MPMX19_00418 0.39 -0.7 417,451 - MPMX19_00418 0.39 +0.6 417,451 - MPMX19_00418 0.39 -1.1 417,451 - MPMX19_00418 0.39 -1.0 417,525 + MPMX19_00418 0.45 -1.1 417,526 - MPMX19_00418 0.45 -0.1 417,585 + MPMX19_00418 0.51 -1.6 417,585 + MPMX19_00418 0.51 -1.8 417,585 + MPMX19_00418 0.51 +0.1 417,585 + MPMX19_00418 0.51 -2.0 417,585 + MPMX19_00418 0.51 -0.9 417,585 + MPMX19_00418 0.51 +0.2 417,585 + MPMX19_00418 0.51 -1.7 417,585 + MPMX19_00418 0.51 +0.4 417,585 + MPMX19_00418 0.51 -1.2 417,585 + MPMX19_00418 0.51 -1.0 417,585 + MPMX19_00418 0.51 -0.8 417,585 + MPMX19_00418 0.51 -0.9 417,585 + MPMX19_00418 0.51 +1.6 417,585 + MPMX19_00418 0.51 +0.2 417,585 + MPMX19_00418 0.51 -0.8 417,585 + MPMX19_00418 0.51 -1.1 417,585 + MPMX19_00418 0.51 +0.5 417,585 + MPMX19_00418 0.51 +0.5 417,585 + MPMX19_00418 0.51 +0.3 417,585 + MPMX19_00418 0.51 +1.3 417,585 + MPMX19_00418 0.51 +0.2 417,585 + MPMX19_00418 0.51 -0.5 417,585 + MPMX19_00418 0.51 +0.1 417,585 + MPMX19_00418 0.51 -0.8 417,586 - MPMX19_00418 0.51 -0.1 417,586 - MPMX19_00418 0.51 -0.1 417,586 - MPMX19_00418 0.51 +0.2 417,586 - MPMX19_00418 0.51 -0.5 417,586 - MPMX19_00418 0.51 -0.2 417,586 - MPMX19_00418 0.51 -2.5 417,586 - MPMX19_00418 0.51 -0.6 417,586 - MPMX19_00418 0.51 -0.7 417,594 + MPMX19_00418 0.51 -0.4 417,594 + MPMX19_00418 0.51 +0.4 417,595 - MPMX19_00418 0.51 +0.2 417,753 + MPMX19_00418 0.65 -0.7 417,753 + MPMX19_00418 0.65 -1.3 417,753 + MPMX19_00418 0.65 -1.4 417,754 - MPMX19_00418 0.65 -0.4 417,754 - MPMX19_00418 0.65 +0.7 417,754 - MPMX19_00418 0.65 -1.2 417,754 - MPMX19_00418 0.65 -0.1 417,754 - MPMX19_00418 0.65 +0.7 417,754 - MPMX19_00418 0.65 -1.7 417,754 - MPMX19_00418 0.65 -2.0 417,813 + MPMX19_00418 0.70 -1.3 417,813 + MPMX19_00418 0.70 -0.6 417,813 + MPMX19_00418 0.70 +0.1 417,813 + MPMX19_00418 0.70 -0.4 417,813 + MPMX19_00418 0.70 -1.7 417,813 + MPMX19_00418 0.70 -2.7 417,813 + MPMX19_00418 0.70 +0.5 417,813 + MPMX19_00418 0.70 -2.2 417,813 + MPMX19_00418 0.70 -1.2 417,814 - MPMX19_00418 0.70 -1.4 417,814 - MPMX19_00418 0.70 -0.5 417,814 - MPMX19_00418 0.70 -0.5 417,814 - MPMX19_00418 0.70 -0.0 417,858 + MPMX19_00418 0.74 -1.0 417,858 + MPMX19_00418 0.74 +0.4 417,858 + MPMX19_00418 0.74 -0.7 417,858 + MPMX19_00418 0.74 -1.8 417,859 - MPMX19_00418 0.74 -0.7 417,910 - MPMX19_00418 0.78 +0.1 417,910 - MPMX19_00418 0.78 -0.2 417,910 - MPMX19_00418 0.78 -0.5 417,910 - MPMX19_00418 0.78 -0.0 417,910 - MPMX19_00418 0.78 -1.4 417,910 - MPMX19_00418 0.78 -1.6 417,910 - MPMX19_00418 0.78 -2.1 417,999 - MPMX19_00418 0.86 +0.1 418,605 + MPMX19_00419 0.38 -1.2 418,605 + MPMX19_00419 0.38 -0.1 418,606 - MPMX19_00419 0.38 -0.9 419,028 + MPMX19_00419 0.77 -1.5 419,028 + MPMX19_00419 0.77 +0.4 419,028 + MPMX19_00419 0.77 -1.2 419,028 + MPMX19_00419 0.77 -0.2 419,028 + MPMX19_00419 0.77 -1.5 419,028 + MPMX19_00419 0.77 +1.9 419,028 + MPMX19_00419 0.77 -1.7 419,028 + MPMX19_00419 0.77 -0.7 419,028 + MPMX19_00419 0.77 -1.1 419,028 + MPMX19_00419 0.77 -0.5 419,028 + MPMX19_00419 0.77 -1.2 419,028 + MPMX19_00419 0.77 -1.2 419,028 + MPMX19_00419 0.77 +0.1 419,028 + MPMX19_00419 0.77 -0.1 419,029 - MPMX19_00419 0.77 -2.0 419,029 - MPMX19_00419 0.77 -1.0 419,029 - MPMX19_00419 0.77 -1.1 419,029 - MPMX19_00419 0.77 +0.1 419,029 - MPMX19_00419 0.77 -0.9 419,029 - MPMX19_00419 0.77 -0.7 419,029 - MPMX19_00419 0.77 -0.7 419,029 - MPMX19_00419 0.77 +0.5 419,029 - MPMX19_00419 0.77 +0.1 419,029 - MPMX19_00419 0.77 +0.1 419,029 - MPMX19_00419 0.77 -1.2 419,029 - MPMX19_00419 0.77 +0.1 419,029 - MPMX19_00419 0.77 -0.6 419,029 - MPMX19_00419 0.77 -0.4 419,029 - MPMX19_00419 0.77 -0.1 419,029 - MPMX19_00419 0.77 -0.9 419,029 - MPMX19_00419 0.77 -0.5 419,029 - MPMX19_00419 0.77 -1.8
Or see this region's nucleotide sequence