Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00291 and MPMX19_00292 are separated by 162 nucleotides MPMX19_00292 and MPMX19_00293 are separated by 17 nucleotides MPMX19_00293 and MPMX19_00294 are separated by 75 nucleotides
MPMX19_00291: MPMX19_00291 - hypothetical protein, at 291,620 to 292,447
_00291
MPMX19_00292: MPMX19_00292 - Cytochrome b561, at 292,610 to 293,173
_00292
MPMX19_00293: MPMX19_00293 - hypothetical protein, at 293,191 to 293,412
_00293
MPMX19_00294: MPMX19_00294 - Adaptive-response sensory-kinase SasA, at 293,488 to 294,945
_00294
Position (kb) 292
293
294 Strain fitness (log2 ratio) -2
-1
0
1
2 at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.621 kb on + strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.622 kb on - strand at 291.841 kb on - strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.963 kb on + strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 291.964 kb on - strand, within MPMX19_00291 at 292.233 kb on + strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.234 kb on - strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.297 kb on + strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.298 kb on - strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.299 kb on + strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.300 kb on - strand, within MPMX19_00291 at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.527 kb on + strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.528 kb on - strand at 292.531 kb on + strand at 292.531 kb on + strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.532 kb on - strand at 292.543 kb on + strand at 292.544 kb on - strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.545 kb on + strand at 292.546 kb on - strand at 292.546 kb on - strand at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.684 kb on + strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.685 kb on - strand, within MPMX19_00292 at 292.759 kb on + strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.760 kb on - strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.896 kb on + strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 292.897 kb on - strand, within MPMX19_00292 at 293.029 kb on - strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.076 kb on + strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.077 kb on - strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.103 kb on + strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.104 kb on - strand, within MPMX19_00292 at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.160 kb on + strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.161 kb on - strand at 293.467 kb on + strand at 293.468 kb on - strand at 293.479 kb on - strand at 293.489 kb on + strand at 293.490 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 291,621 + -0.7 291,621 + -1.0 291,621 + -2.5 291,621 + -0.3 291,621 + -0.8 291,621 + +0.2 291,622 - +0.8 291,622 - -1.2 291,622 - +0.6 291,622 - -1.4 291,622 - -2.1 291,841 - MPMX19_00291 0.27 +0.2 291,963 + MPMX19_00291 0.41 +0.3 291,963 + MPMX19_00291 0.41 -0.8 291,963 + MPMX19_00291 0.41 -0.1 291,963 + MPMX19_00291 0.41 +0.2 291,963 + MPMX19_00291 0.41 -0.2 291,964 - MPMX19_00291 0.42 -0.1 291,964 - MPMX19_00291 0.42 -1.9 291,964 - MPMX19_00291 0.42 -0.9 291,964 - MPMX19_00291 0.42 -1.4 291,964 - MPMX19_00291 0.42 -1.8 292,233 + MPMX19_00291 0.74 -0.4 292,234 - MPMX19_00291 0.74 -0.3 292,234 - MPMX19_00291 0.74 +1.2 292,234 - MPMX19_00291 0.74 -0.3 292,234 - MPMX19_00291 0.74 -0.4 292,234 - MPMX19_00291 0.74 -1.0 292,234 - MPMX19_00291 0.74 +0.2 292,234 - MPMX19_00291 0.74 -2.1 292,297 + MPMX19_00291 0.82 -0.0 292,297 + MPMX19_00291 0.82 +2.6 292,297 + MPMX19_00291 0.82 -0.4 292,297 + MPMX19_00291 0.82 +0.8 292,297 + MPMX19_00291 0.82 +0.3 292,297 + MPMX19_00291 0.82 +0.3 292,297 + MPMX19_00291 0.82 -1.4 292,297 + MPMX19_00291 0.82 -1.4 292,297 + MPMX19_00291 0.82 -1.7 292,297 + MPMX19_00291 0.82 -0.7 292,297 + MPMX19_00291 0.82 +1.2 292,297 + MPMX19_00291 0.82 -0.1 292,297 + MPMX19_00291 0.82 -0.9 292,297 + MPMX19_00291 0.82 +0.3 292,297 + MPMX19_00291 0.82 +0.3 292,297 + MPMX19_00291 0.82 -0.3 292,297 + MPMX19_00291 0.82 +1.2 292,297 + MPMX19_00291 0.82 +0.6 292,298 - MPMX19_00291 0.82 +0.5 292,298 - MPMX19_00291 0.82 +1.2 292,298 - MPMX19_00291 0.82 -1.8 292,298 - MPMX19_00291 0.82 -0.7 292,298 - MPMX19_00291 0.82 -1.0 292,298 - MPMX19_00291 0.82 -0.0 292,298 - MPMX19_00291 0.82 -0.8 292,298 - MPMX19_00291 0.82 -0.3 292,298 - MPMX19_00291 0.82 -0.1 292,298 - MPMX19_00291 0.82 -0.2 292,298 - MPMX19_00291 0.82 +0.6 292,298 - MPMX19_00291 0.82 +0.9 292,298 - MPMX19_00291 0.82 +0.3 292,298 - MPMX19_00291 0.82 -0.7 292,298 - MPMX19_00291 0.82 -1.2 292,298 - MPMX19_00291 0.82 -1.3 292,298 - MPMX19_00291 0.82 +0.2 292,298 - MPMX19_00291 0.82 +1.4 292,298 - MPMX19_00291 0.82 +1.3 292,298 - MPMX19_00291 0.82 -0.2 292,298 - MPMX19_00291 0.82 -0.0 292,298 - MPMX19_00291 0.82 -0.4 292,299 + MPMX19_00291 0.82 -0.8 292,299 + MPMX19_00291 0.82 -0.7 292,299 + MPMX19_00291 0.82 -0.7 292,299 + MPMX19_00291 0.82 +0.1 292,299 + MPMX19_00291 0.82 -0.0 292,299 + MPMX19_00291 0.82 -1.4 292,299 + MPMX19_00291 0.82 -0.3 292,299 + MPMX19_00291 0.82 -0.4 292,299 + MPMX19_00291 0.82 -0.8 292,299 + MPMX19_00291 0.82 -1.2 292,300 - MPMX19_00291 0.82 -0.7 292,300 - MPMX19_00291 0.82 +0.9 292,300 - MPMX19_00291 0.82 +0.8 292,300 - MPMX19_00291 0.82 -2.0 292,300 - MPMX19_00291 0.82 -0.3 292,300 - MPMX19_00291 0.82 +1.4 292,300 - MPMX19_00291 0.82 -0.4 292,300 - MPMX19_00291 0.82 +0.6 292,300 - MPMX19_00291 0.82 +0.8 292,300 - MPMX19_00291 0.82 +0.5 292,300 - MPMX19_00291 0.82 -1.8 292,300 - MPMX19_00291 0.82 -2.4 292,300 - MPMX19_00291 0.82 -0.5 292,300 - MPMX19_00291 0.82 -0.0 292,300 - MPMX19_00291 0.82 +0.2 292,300 - MPMX19_00291 0.82 +0.8 292,300 - MPMX19_00291 0.82 -1.3 292,300 - MPMX19_00291 0.82 +0.5 292,300 - MPMX19_00291 0.82 +0.8 292,300 - MPMX19_00291 0.82 -0.1 292,527 + +0.2 292,527 + -0.2 292,527 + -0.6 292,527 + +0.9 292,527 + -1.7 292,527 + -0.7 292,527 + -1.0 292,527 + -0.1 292,527 + +0.1 292,527 + +0.7 292,528 - -2.2 292,528 - +0.3 292,528 - +0.7 292,531 + +0.3 292,531 + -0.0 292,532 - -0.4 292,532 - +0.9 292,532 - -1.0 292,543 + -1.2 292,544 - +0.3 292,545 + -0.7 292,545 + +0.1 292,545 + +0.3 292,546 - -0.2 292,546 - -2.3 292,684 + MPMX19_00292 0.13 -0.1 292,684 + MPMX19_00292 0.13 -0.2 292,684 + MPMX19_00292 0.13 +0.1 292,685 - MPMX19_00292 0.13 +1.1 292,685 - MPMX19_00292 0.13 -1.7 292,685 - MPMX19_00292 0.13 -1.7 292,759 + MPMX19_00292 0.26 -1.9 292,760 - MPMX19_00292 0.27 +0.1 292,760 - MPMX19_00292 0.27 +0.2 292,896 + MPMX19_00292 0.51 -0.3 292,896 + MPMX19_00292 0.51 -1.4 292,896 + MPMX19_00292 0.51 +0.5 292,896 + MPMX19_00292 0.51 -1.1 292,896 + MPMX19_00292 0.51 -0.7 292,896 + MPMX19_00292 0.51 -0.2 292,897 - MPMX19_00292 0.51 +0.7 292,897 - MPMX19_00292 0.51 +0.4 292,897 - MPMX19_00292 0.51 +0.3 292,897 - MPMX19_00292 0.51 -0.6 292,897 - MPMX19_00292 0.51 -1.3 293,029 - MPMX19_00292 0.74 -1.2 293,076 + MPMX19_00292 0.83 +0.1 293,076 + MPMX19_00292 0.83 -1.6 293,077 - MPMX19_00292 0.83 +0.8 293,077 - MPMX19_00292 0.83 -0.9 293,077 - MPMX19_00292 0.83 -0.4 293,103 + MPMX19_00292 0.87 -0.6 293,103 + MPMX19_00292 0.87 +0.6 293,103 + MPMX19_00292 0.87 +0.6 293,103 + MPMX19_00292 0.87 -0.6 293,103 + MPMX19_00292 0.87 -0.8 293,103 + MPMX19_00292 0.87 +0.6 293,103 + MPMX19_00292 0.87 -0.3 293,103 + MPMX19_00292 0.87 -0.1 293,103 + MPMX19_00292 0.87 -0.7 293,103 + MPMX19_00292 0.87 -0.4 293,103 + MPMX19_00292 0.87 -1.2 293,104 - MPMX19_00292 0.88 +0.6 293,104 - MPMX19_00292 0.88 -0.0 293,104 - MPMX19_00292 0.88 -0.4 293,104 - MPMX19_00292 0.88 +2.1 293,104 - MPMX19_00292 0.88 +0.6 293,104 - MPMX19_00292 0.88 +0.1 293,104 - MPMX19_00292 0.88 -0.8 293,104 - MPMX19_00292 0.88 +0.4 293,160 + -0.8 293,160 + -1.4 293,160 + -0.7 293,160 + -0.7 293,160 + -0.4 293,160 + -0.4 293,160 + +0.0 293,160 + -0.2 293,160 + -0.1 293,160 + -1.0 293,160 + +0.7 293,160 + -1.8 293,160 + -1.2 293,160 + -0.2 293,160 + -0.9 293,160 + +0.7 293,160 + -1.2 293,160 + +0.3 293,160 + -1.8 293,160 + +0.4 293,160 + +0.9 293,160 + +0.3 293,160 + +0.3 293,160 + -0.9 293,161 - +0.3 293,161 - -1.0 293,161 - -1.3 293,161 - +1.0 293,161 - +0.1 293,161 - -0.3 293,161 - -1.9 293,161 - -1.0 293,161 - +0.1 293,161 - +0.4 293,161 - +0.4 293,161 - -0.5 293,161 - -0.1 293,161 - -0.7 293,161 - -0.2 293,161 - +0.4 293,161 - +0.3 293,161 - -0.6 293,161 - +1.4 293,161 - -1.4 293,467 + -0.0 293,468 - -1.1 293,479 - +1.6 293,489 + -1.6 293,490 - -0.5
Or see this region's nucleotide sequence