Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00249 and MPMX19_00250 are separated by 190 nucleotides MPMX19_00250 and MPMX19_00251 are separated by 107 nucleotides MPMX19_00251 and MPMX19_00252 are separated by 25 nucleotides
MPMX19_00249: MPMX19_00249 - Chaperone protein HtpG, at 249,383 to 251,263
_00249
MPMX19_00250: MPMX19_00250 - hypothetical protein, at 251,454 to 252,098
_00250
MPMX19_00251: MPMX19_00251 - Tetracycline repressor protein class A from transposon 1721, at 252,206 to 252,919
_00251
MPMX19_00252: MPMX19_00252 - hypothetical protein, at 252,945 to 254,582
_00252
Position (kb) 252
253 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.316 kb on + strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.317 kb on - strand at 251.462 kb on + strand at 251.462 kb on + strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.463 kb on - strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.479 kb on + strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.480 kb on - strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.506 kb on + strand at 251.507 kb on - strand at 251.507 kb on - strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.052 kb on + strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.053 kb on - strand at 252.144 kb on - strand at 252.152 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.205 kb on + strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.206 kb on - strand at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.332 kb on + strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.333 kb on - strand, within MPMX19_00251 at 252.500 kb on + strand, within MPMX19_00251 at 252.500 kb on + strand, within MPMX19_00251 at 252.501 kb on - strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.601 kb on + strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.602 kb on - strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.620 kb on + strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.621 kb on - strand, within MPMX19_00251 at 252.740 kb on + strand, within MPMX19_00251 at 252.741 kb on - strand, within MPMX19_00251 at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.946 kb on + strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 252.947 kb on - strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.063 kb on + strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.064 kb on - strand at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.849 kb on + strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252 at 253.850 kb on - strand, within MPMX19_00252
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 251,316 + -0.8 251,316 + +0.5 251,316 + +0.2 251,316 + -0.2 251,316 + -0.4 251,316 + -0.5 251,316 + -2.1 251,316 + -0.6 251,316 + -0.4 251,316 + -1.0 251,316 + -1.3 251,316 + -0.5 251,316 + -1.7 251,316 + -0.3 251,316 + -0.6 251,316 + -0.1 251,316 + -1.1 251,317 - +0.3 251,317 - -0.2 251,317 - -2.2 251,317 - -0.2 251,317 - +0.8 251,317 - -1.3 251,317 - -0.1 251,317 - -0.5 251,317 - -0.8 251,317 - -0.1 251,317 - +1.5 251,317 - +0.7 251,317 - -0.1 251,317 - -0.1 251,462 + -0.9 251,462 + -0.1 251,463 - -0.1 251,463 - +0.8 251,463 - +0.4 251,463 - -0.7 251,479 + +0.2 251,479 + -0.2 251,479 + +0.0 251,479 + -1.7 251,479 + +0.1 251,479 + +0.5 251,479 + -0.6 251,479 + -1.4 251,479 + -1.2 251,479 + -1.2 251,479 + -2.0 251,479 + -0.4 251,480 - -0.7 251,480 - -0.1 251,480 - +0.1 251,480 - -0.5 251,480 - -0.0 251,480 - -1.3 251,480 - -1.0 251,480 - -0.8 251,480 - -0.0 251,480 - -0.1 251,480 - +0.9 251,480 - -0.3 251,480 - +0.6 251,480 - +1.8 251,506 + +0.6 251,506 + +0.5 251,506 + +0.2 251,506 + -0.8 251,507 - +0.6 251,507 - +0.0 252,052 + +0.0 252,052 + -0.9 252,052 + -0.4 252,052 + -0.8 252,052 + +0.6 252,052 + -1.1 252,052 + -1.0 252,052 + -0.4 252,052 + +0.1 252,052 + +0.6 252,052 + +0.1 252,052 + +0.0 252,052 + -1.1 252,053 - -0.8 252,053 - -1.5 252,053 - +0.1 252,053 - +0.6 252,053 - -0.3 252,053 - +0.6 252,053 - +0.3 252,053 - -3.0 252,053 - -2.1 252,053 - +0.1 252,053 - -0.5 252,053 - -1.0 252,053 - -1.4 252,053 - +0.0 252,053 - -1.1 252,053 - -1.8 252,144 - -0.8 252,152 + -0.7 252,205 + -0.6 252,205 + -0.8 252,205 + -0.6 252,205 + -0.1 252,205 + -0.2 252,205 + -0.1 252,205 + -0.1 252,205 + +0.3 252,205 + -0.5 252,205 + +0.1 252,205 + -2.0 252,205 + +0.2 252,205 + +0.1 252,205 + -0.9 252,205 + +0.1 252,205 + -0.3 252,205 + -1.4 252,205 + -0.7 252,205 + -0.7 252,205 + -0.7 252,205 + -0.5 252,205 + +1.8 252,205 + -2.1 252,205 + +0.1 252,205 + -0.6 252,206 - +1.0 252,206 - -1.0 252,206 - +0.0 252,206 - +0.2 252,206 - +0.0 252,206 - -1.2 252,206 - -0.8 252,206 - +0.8 252,206 - -0.4 252,206 - +0.6 252,206 - -0.4 252,206 - -0.2 252,206 - -1.3 252,206 - -0.8 252,206 - -0.8 252,206 - -0.2 252,206 - +0.5 252,206 - +0.6 252,332 + MPMX19_00251 0.18 -0.6 252,332 + MPMX19_00251 0.18 -0.8 252,332 + MPMX19_00251 0.18 +0.5 252,332 + MPMX19_00251 0.18 -1.2 252,332 + MPMX19_00251 0.18 -0.5 252,332 + MPMX19_00251 0.18 +0.1 252,333 - MPMX19_00251 0.18 +0.2 252,333 - MPMX19_00251 0.18 +0.5 252,333 - MPMX19_00251 0.18 +0.9 252,333 - MPMX19_00251 0.18 +1.2 252,333 - MPMX19_00251 0.18 +1.0 252,333 - MPMX19_00251 0.18 -0.7 252,333 - MPMX19_00251 0.18 +0.2 252,500 + MPMX19_00251 0.41 -1.4 252,500 + MPMX19_00251 0.41 -0.5 252,501 - MPMX19_00251 0.41 +0.6 252,601 + MPMX19_00251 0.55 +0.1 252,601 + MPMX19_00251 0.55 +0.4 252,601 + MPMX19_00251 0.55 -1.5 252,601 + MPMX19_00251 0.55 -1.1 252,601 + MPMX19_00251 0.55 -0.1 252,601 + MPMX19_00251 0.55 +0.3 252,601 + MPMX19_00251 0.55 +0.0 252,601 + MPMX19_00251 0.55 -0.7 252,601 + MPMX19_00251 0.55 +0.7 252,601 + MPMX19_00251 0.55 +0.7 252,601 + MPMX19_00251 0.55 -1.6 252,602 - MPMX19_00251 0.55 +0.2 252,602 - MPMX19_00251 0.55 +1.8 252,602 - MPMX19_00251 0.55 -0.1 252,602 - MPMX19_00251 0.55 -1.3 252,602 - MPMX19_00251 0.55 +0.6 252,602 - MPMX19_00251 0.55 -0.1 252,602 - MPMX19_00251 0.55 -0.4 252,602 - MPMX19_00251 0.55 +0.6 252,602 - MPMX19_00251 0.55 +0.6 252,602 - MPMX19_00251 0.55 -0.1 252,602 - MPMX19_00251 0.55 -0.4 252,602 - MPMX19_00251 0.55 -1.5 252,602 - MPMX19_00251 0.55 -1.0 252,602 - MPMX19_00251 0.55 +0.8 252,602 - MPMX19_00251 0.55 -0.6 252,602 - MPMX19_00251 0.55 +0.8 252,602 - MPMX19_00251 0.55 +0.2 252,602 - MPMX19_00251 0.55 -1.1 252,602 - MPMX19_00251 0.55 +0.1 252,602 - MPMX19_00251 0.55 -1.9 252,620 + MPMX19_00251 0.58 -0.8 252,620 + MPMX19_00251 0.58 -0.9 252,620 + MPMX19_00251 0.58 +0.2 252,620 + MPMX19_00251 0.58 +1.9 252,620 + MPMX19_00251 0.58 -0.8 252,620 + MPMX19_00251 0.58 +0.2 252,620 + MPMX19_00251 0.58 +1.2 252,620 + MPMX19_00251 0.58 -2.5 252,620 + MPMX19_00251 0.58 -0.7 252,621 - MPMX19_00251 0.58 +0.6 252,621 - MPMX19_00251 0.58 -0.3 252,621 - MPMX19_00251 0.58 -0.1 252,621 - MPMX19_00251 0.58 +0.3 252,621 - MPMX19_00251 0.58 +0.5 252,621 - MPMX19_00251 0.58 +1.2 252,621 - MPMX19_00251 0.58 -0.5 252,621 - MPMX19_00251 0.58 +1.0 252,621 - MPMX19_00251 0.58 -0.8 252,740 + MPMX19_00251 0.75 -1.4 252,741 - MPMX19_00251 0.75 -1.2 252,946 + -1.3 252,946 + -1.1 252,946 + -0.5 252,946 + +0.2 252,946 + +0.9 252,946 + -0.5 252,946 + -0.6 252,946 + -1.5 252,946 + -0.5 252,946 + -0.8 252,947 - -1.6 252,947 - -1.0 252,947 - -2.6 252,947 - -1.3 252,947 - +0.5 252,947 - -1.1 252,947 - -0.9 252,947 - -1.5 252,947 - -0.4 252,947 - -0.9 252,947 - -1.5 252,947 - -0.4 252,947 - -1.0 253,063 + +0.0 253,063 + +0.6 253,063 + +0.3 253,063 + +1.5 253,063 + -1.3 253,063 + +0.1 253,063 + +0.2 253,063 + +1.2 253,063 + -1.3 253,063 + +0.2 253,063 + +0.0 253,063 + -0.6 253,063 + -0.5 253,063 + -1.5 253,063 + +0.2 253,063 + -0.3 253,063 + -1.1 253,063 + +0.0 253,063 + -0.6 253,063 + -0.3 253,064 - -0.1 253,064 - -0.2 253,064 - -0.9 253,064 - -0.1 253,064 - -0.6 253,064 - +0.2 253,064 - -0.9 253,064 - +0.5 253,064 - -0.7 253,064 - +0.5 253,064 - +0.1 253,064 - -0.9 253,064 - -0.7 253,064 - -0.5 253,064 - -1.3 253,064 - -0.1 253,064 - -1.0 253,064 - -1.6 253,064 - -2.8 253,064 - +0.3 253,064 - -1.7 253,849 + MPMX19_00252 0.55 -1.8 253,849 + MPMX19_00252 0.55 -0.7 253,849 + MPMX19_00252 0.55 +1.2 253,849 + MPMX19_00252 0.55 -0.1 253,849 + MPMX19_00252 0.55 +1.5 253,849 + MPMX19_00252 0.55 -1.2 253,849 + MPMX19_00252 0.55 +1.0 253,849 + MPMX19_00252 0.55 +0.2 253,849 + MPMX19_00252 0.55 -0.5 253,849 + MPMX19_00252 0.55 -0.3 253,850 - MPMX19_00252 0.55 -0.5 253,850 - MPMX19_00252 0.55 -1.0 253,850 - MPMX19_00252 0.55 -1.6 253,850 - MPMX19_00252 0.55 +0.8 253,850 - MPMX19_00252 0.55 -0.8 253,850 - MPMX19_00252 0.55 -0.1 253,850 - MPMX19_00252 0.55 +0.5 253,850 - MPMX19_00252 0.55 +0.2 253,850 - MPMX19_00252 0.55 +1.0 253,850 - MPMX19_00252 0.55 +0.6 253,850 - MPMX19_00252 0.55 -1.0
Or see this region's nucleotide sequence