Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00245 and MPMX19_00246 are separated by 99 nucleotides MPMX19_00246 and MPMX19_00247 are separated by 198 nucleotides MPMX19_00247 and MPMX19_00248 are separated by 399 nucleotides
MPMX19_00245: MPMX19_00245 - hypothetical protein, at 245,855 to 246,589
_00245
MPMX19_00246: MPMX19_00246 - hypothetical protein, at 246,689 to 247,054
_00246
MPMX19_00247: MPMX19_00247 - Ferric uptake regulation protein, at 247,253 to 247,690
_00247
MPMX19_00248: MPMX19_00248 - Sensor histidine kinase RcsC, at 248,090 to 249,313
_00248
Position (kb) 247
248 Strain fitness (log2 ratio) -2
-1
0
1
2 at 246.599 kb on + strand at 246.600 kb on - strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.246 kb on + strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.247 kb on - strand at 247.248 kb on + strand at 247.248 kb on + strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.249 kb on - strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.250 kb on + strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.251 kb on - strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.254 kb on + strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.255 kb on - strand at 247.267 kb on + strand at 247.268 kb on - strand at 247.296 kb on + strand at 247.296 kb on + strand at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.297 kb on - strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.326 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.343 kb on + strand, within MPMX19_00247 at 247.344 kb on - strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.409 kb on + strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.410 kb on - strand, within MPMX19_00247 at 247.446 kb on + strand, within MPMX19_00247 at 247.519 kb on - strand, within MPMX19_00247 at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.697 kb on + strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.698 kb on - strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.841 kb on + strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.842 kb on - strand at 247.924 kb on + strand at 247.925 kb on - strand at 247.963 kb on + strand at 247.963 kb on + strand at 247.964 kb on - strand at 247.964 kb on - strand at 247.964 kb on - strand at 247.980 kb on + strand at 247.980 kb on + strand at 247.981 kb on - strand at 247.981 kb on - strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.991 kb on + strand at 247.992 kb on - strand at 247.992 kb on - strand at 247.992 kb on - strand at 247.992 kb on - strand at 248.143 kb on + strand at 248.143 kb on + strand at 248.143 kb on + strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.144 kb on - strand at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.501 kb on + strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248 at 248.502 kb on - strand, within MPMX19_00248
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 246,599 + +0.3 246,600 - -0.4 247,246 + +0.2 247,246 + -0.4 247,246 + -0.8 247,246 + -1.3 247,246 + -0.6 247,246 + +1.0 247,246 + -0.6 247,246 + -0.1 247,247 - +0.5 247,247 - -0.4 247,247 - -2.3 247,247 - -0.1 247,247 - +0.2 247,247 - +1.1 247,247 - +0.5 247,247 - -0.0 247,247 - -0.3 247,247 - -0.3 247,247 - +0.6 247,248 + -0.3 247,248 + -0.7 247,249 - -0.3 247,249 - -1.9 247,249 - +0.6 247,250 + -1.6 247,250 + -0.3 247,250 + +0.5 247,250 + +1.0 247,250 + -0.2 247,250 + -1.2 247,250 + +0.2 247,250 + -0.5 247,250 + -1.1 247,250 + +0.2 247,250 + -1.3 247,250 + +0.2 247,250 + +0.7 247,250 + -0.3 247,251 - -0.6 247,251 - -0.3 247,251 - -1.5 247,254 + +0.9 247,254 + -0.6 247,254 + -0.7 247,254 + -0.8 247,254 + -0.1 247,254 + +0.9 247,254 + +0.1 247,254 + -0.3 247,254 + -1.1 247,254 + +0.8 247,254 + -0.4 247,254 + +0.3 247,254 + +0.6 247,254 + -0.9 247,254 + -0.4 247,254 + +0.3 247,254 + -0.4 247,255 - +0.3 247,255 - +0.5 247,255 - -0.7 247,255 - +0.6 247,255 - -0.4 247,255 - +0.5 247,255 - -1.3 247,255 - -0.7 247,255 - -0.7 247,255 - -0.7 247,267 + +0.3 247,268 - +0.8 247,296 + -1.6 247,296 + +0.2 247,297 - MPMX19_00247 0.10 -0.7 247,297 - MPMX19_00247 0.10 -1.3 247,297 - MPMX19_00247 0.10 +0.1 247,326 + MPMX19_00247 0.17 -1.0 247,326 + MPMX19_00247 0.17 -2.4 247,343 + MPMX19_00247 0.21 -1.6 247,343 + MPMX19_00247 0.21 -0.7 247,344 - MPMX19_00247 0.21 +0.1 247,409 + MPMX19_00247 0.36 +0.4 247,409 + MPMX19_00247 0.36 -1.5 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.2 247,409 + MPMX19_00247 0.36 +1.6 247,409 + MPMX19_00247 0.36 +0.5 247,409 + MPMX19_00247 0.36 +0.2 247,409 + MPMX19_00247 0.36 +0.8 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.5 247,409 + MPMX19_00247 0.36 -0.6 247,409 + MPMX19_00247 0.36 +0.0 247,410 - MPMX19_00247 0.36 -0.8 247,410 - MPMX19_00247 0.36 -0.1 247,410 - MPMX19_00247 0.36 -0.7 247,410 - MPMX19_00247 0.36 +0.6 247,446 + MPMX19_00247 0.44 -0.7 247,519 - MPMX19_00247 0.61 +0.9 247,697 + +0.6 247,697 + +0.1 247,697 + -0.2 247,697 + -0.7 247,697 + -1.0 247,697 + -0.4 247,697 + +0.9 247,697 + -0.4 247,697 + -0.1 247,697 + -0.4 247,697 + -0.8 247,697 + +0.1 247,697 + -0.4 247,698 - -1.2 247,698 - -1.8 247,698 - -0.4 247,698 - +0.6 247,698 - +0.5 247,698 - -0.2 247,698 - +1.8 247,841 + -0.8 247,841 + -1.0 247,841 + +0.8 247,841 + +0.1 247,841 + -0.5 247,841 + -0.4 247,841 + -1.1 247,841 + -1.3 247,841 + +0.1 247,841 + -0.4 247,841 + -0.1 247,841 + -0.4 247,841 + -0.1 247,841 + -1.5 247,842 - -1.1 247,842 - +0.2 247,842 - -1.1 247,842 - -1.6 247,842 - -1.1 247,842 - +0.4 247,842 - -0.1 247,842 - -1.3 247,842 - +2.2 247,842 - -1.0 247,842 - +1.6 247,842 - +0.2 247,842 - -0.4 247,842 - +0.0 247,842 - -2.7 247,842 - +0.1 247,924 + -0.1 247,925 - -0.3 247,963 + -1.6 247,963 + -0.4 247,964 - -0.6 247,964 - +1.0 247,964 - -1.4 247,980 + +1.2 247,980 + -1.3 247,981 - -0.4 247,981 - -0.7 247,991 + -2.3 247,991 + -0.7 247,991 + +0.1 247,991 + -0.8 247,991 + +0.4 247,991 + +0.2 247,992 - +1.0 247,992 - +1.5 247,992 - -0.4 247,992 - -1.1 248,143 + -0.2 248,143 + -0.0 248,143 + +0.2 248,144 - -0.8 248,144 - +1.2 248,144 - -1.4 248,144 - +0.6 248,144 - +0.4 248,144 - +0.4 248,501 + MPMX19_00248 0.34 +1.2 248,501 + MPMX19_00248 0.34 -1.0 248,501 + MPMX19_00248 0.34 -1.7 248,501 + MPMX19_00248 0.34 -0.3 248,501 + MPMX19_00248 0.34 -0.5 248,501 + MPMX19_00248 0.34 -0.3 248,501 + MPMX19_00248 0.34 -1.3 248,501 + MPMX19_00248 0.34 -0.6 248,502 - MPMX19_00248 0.34 -0.4 248,502 - MPMX19_00248 0.34 +0.0 248,502 - MPMX19_00248 0.34 +0.1 248,502 - MPMX19_00248 0.34 +1.4 248,502 - MPMX19_00248 0.34 +0.9 248,502 - MPMX19_00248 0.34 -1.2 248,502 - MPMX19_00248 0.34 -1.0
Or see this region's nucleotide sequence