Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00224 and MPMX19_00225 are separated by 200 nucleotides MPMX19_00225 and MPMX19_00226 are separated by 7 nucleotides MPMX19_00226 and MPMX19_00227 are separated by 612 nucleotides
MPMX19_00224: MPMX19_00224 - HTH-type transcriptional regulator GltC, at 226,027 to 226,920
_00224
MPMX19_00225: MPMX19_00225 - hypothetical protein, at 227,121 to 227,657
_00225
MPMX19_00226: MPMX19_00226 - hypothetical protein, at 227,665 to 229,218
_00226
MPMX19_00227: MPMX19_00227 - hypothetical protein, at 229,831 to 231,699
_00227
Position (kb) 227
228
229
230 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 226.706 kb on + strand, within MPMX19_00224 at 226.706 kb on + strand, within MPMX19_00224 at 226.706 kb on + strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.707 kb on - strand, within MPMX19_00224 at 226.927 kb on + strand at 226.927 kb on + strand at 226.927 kb on + strand at 226.928 kb on - strand at 226.961 kb on - strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.013 kb on + strand at 227.014 kb on - strand at 227.014 kb on - strand at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.352 kb on + strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.353 kb on - strand, within MPMX19_00225 at 227.487 kb on + strand, within MPMX19_00225 at 227.487 kb on + strand, within MPMX19_00225 at 227.488 kb on - strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.526 kb on + strand, within MPMX19_00225 at 227.527 kb on - strand, within MPMX19_00225 at 227.527 kb on - strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.553 kb on + strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.554 kb on - strand, within MPMX19_00225 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.822 kb on + strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 227.823 kb on - strand, within MPMX19_00226 at 228.110 kb on + strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.111 kb on - strand, within MPMX19_00226 at 228.176 kb on + strand, within MPMX19_00226 at 228.177 kb on - strand, within MPMX19_00226 at 228.347 kb on + strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226 at 228.348 kb on - strand, within MPMX19_00226 at 228.824 kb on + strand, within MPMX19_00226 at 229.093 kb on + strand at 229.093 kb on + strand at 229.094 kb on - strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.272 kb on + strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.273 kb on - strand at 229.274 kb on + strand at 229.274 kb on + strand at 229.275 kb on - strand at 229.275 kb on - strand at 229.275 kb on - strand at 229.295 kb on + strand at 229.296 kb on - strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.422 kb on + strand at 229.476 kb on + strand at 229.477 kb on - strand at 229.477 kb on - strand at 229.477 kb on - strand at 229.477 kb on - strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.529 kb on + strand at 229.530 kb on - strand at 229.530 kb on - strand at 229.530 kb on - strand at 229.530 kb on - strand at 229.530 kb on - strand at 229.530 kb on - strand at 229.561 kb on + strand at 229.561 kb on + strand at 229.561 kb on + strand at 229.562 kb on - strand at 229.616 kb on + strand at 229.616 kb on + strand at 229.616 kb on + strand at 229.616 kb on + strand at 229.616 kb on + strand at 229.738 kb on + strand at 229.738 kb on + strand at 229.738 kb on + strand at 229.738 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.782 kb on + strand at 229.984 kb on + strand at 229.984 kb on + strand at 229.984 kb on + strand at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.032 kb on + strand, within MPMX19_00227 at 230.033 kb on - strand, within MPMX19_00227 at 230.161 kb on + strand, within MPMX19_00227 at 230.161 kb on + strand, within MPMX19_00227 at 230.161 kb on + strand, within MPMX19_00227 at 230.161 kb on + strand, within MPMX19_00227 at 230.161 kb on + strand, within MPMX19_00227 at 230.162 kb on - strand, within MPMX19_00227 at 230.162 kb on - strand, within MPMX19_00227
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 226,706 + MPMX19_00224 0.76 +0.8 226,706 + MPMX19_00224 0.76 -0.1 226,706 + MPMX19_00224 0.76 +0.2 226,707 - MPMX19_00224 0.76 +0.2 226,707 - MPMX19_00224 0.76 +0.9 226,707 - MPMX19_00224 0.76 +0.2 226,927 + +0.5 226,927 + -1.0 226,927 + -0.1 226,928 - -0.3 226,961 - -1.0 227,013 + +0.2 227,013 + +0.9 227,013 + -1.6 227,013 + +0.8 227,014 - -1.4 227,014 - -2.1 227,352 + MPMX19_00225 0.43 +1.3 227,352 + MPMX19_00225 0.43 -0.8 227,352 + MPMX19_00225 0.43 -0.4 227,352 + MPMX19_00225 0.43 +0.2 227,352 + MPMX19_00225 0.43 +1.5 227,352 + MPMX19_00225 0.43 -0.4 227,352 + MPMX19_00225 0.43 +0.2 227,352 + MPMX19_00225 0.43 -1.6 227,353 - MPMX19_00225 0.43 +0.9 227,353 - MPMX19_00225 0.43 -0.5 227,353 - MPMX19_00225 0.43 -2.0 227,353 - MPMX19_00225 0.43 -2.2 227,353 - MPMX19_00225 0.43 -0.3 227,487 + MPMX19_00225 0.68 -0.1 227,487 + MPMX19_00225 0.68 -0.6 227,488 - MPMX19_00225 0.68 -0.5 227,526 + MPMX19_00225 0.75 -0.4 227,526 + MPMX19_00225 0.75 +0.4 227,526 + MPMX19_00225 0.75 -0.1 227,527 - MPMX19_00225 0.76 +1.7 227,527 - MPMX19_00225 0.76 -0.3 227,553 + MPMX19_00225 0.80 +1.2 227,553 + MPMX19_00225 0.80 +0.5 227,553 + MPMX19_00225 0.80 -0.6 227,553 + MPMX19_00225 0.80 -0.5 227,554 - MPMX19_00225 0.81 -0.4 227,554 - MPMX19_00225 0.81 -0.7 227,554 - MPMX19_00225 0.81 +1.2 227,554 - MPMX19_00225 0.81 +0.9 227,554 - MPMX19_00225 0.81 -0.4 227,554 - MPMX19_00225 0.81 -0.1 227,554 - MPMX19_00225 0.81 -1.1 227,554 - MPMX19_00225 0.81 -0.1 227,554 - MPMX19_00225 0.81 -0.4 227,822 + MPMX19_00226 0.10 +0.0 227,822 + MPMX19_00226 0.10 -0.5 227,822 + MPMX19_00226 0.10 +0.2 227,822 + MPMX19_00226 0.10 -0.1 227,822 + MPMX19_00226 0.10 -0.7 227,822 + MPMX19_00226 0.10 +0.6 227,822 + MPMX19_00226 0.10 -0.6 227,822 + MPMX19_00226 0.10 +0.6 227,822 + MPMX19_00226 0.10 -0.6 227,822 + MPMX19_00226 0.10 -1.0 227,822 + MPMX19_00226 0.10 -0.6 227,822 + MPMX19_00226 0.10 +0.5 227,822 + MPMX19_00226 0.10 +0.4 227,822 + MPMX19_00226 0.10 -0.7 227,822 + MPMX19_00226 0.10 -0.8 227,822 + MPMX19_00226 0.10 +0.3 227,822 + MPMX19_00226 0.10 +0.2 227,822 + MPMX19_00226 0.10 -1.1 227,822 + MPMX19_00226 0.10 -0.3 227,822 + MPMX19_00226 0.10 +1.0 227,822 + MPMX19_00226 0.10 +0.2 227,822 + MPMX19_00226 0.10 -0.6 227,822 + MPMX19_00226 0.10 -1.1 227,823 - MPMX19_00226 0.10 -2.8 227,823 - MPMX19_00226 0.10 -0.3 227,823 - MPMX19_00226 0.10 -0.3 227,823 - MPMX19_00226 0.10 +0.1 227,823 - MPMX19_00226 0.10 +1.4 227,823 - MPMX19_00226 0.10 +0.9 227,823 - MPMX19_00226 0.10 -0.8 227,823 - MPMX19_00226 0.10 +0.6 227,823 - MPMX19_00226 0.10 -1.3 227,823 - MPMX19_00226 0.10 -1.0 227,823 - MPMX19_00226 0.10 -0.1 227,823 - MPMX19_00226 0.10 -0.1 227,823 - MPMX19_00226 0.10 +1.0 227,823 - MPMX19_00226 0.10 +0.5 227,823 - MPMX19_00226 0.10 -1.6 227,823 - MPMX19_00226 0.10 -1.2 227,823 - MPMX19_00226 0.10 -0.5 228,110 + MPMX19_00226 0.29 -0.5 228,111 - MPMX19_00226 0.29 -1.3 228,111 - MPMX19_00226 0.29 -0.4 228,111 - MPMX19_00226 0.29 +0.4 228,176 + MPMX19_00226 0.33 -0.1 228,177 - MPMX19_00226 0.33 -1.0 228,347 + MPMX19_00226 0.44 -0.8 228,348 - MPMX19_00226 0.44 -1.0 228,348 - MPMX19_00226 0.44 -0.5 228,348 - MPMX19_00226 0.44 -0.6 228,824 + MPMX19_00226 0.75 -0.6 229,093 + -0.8 229,093 + -0.1 229,094 - -0.6 229,272 + -1.1 229,272 + -0.7 229,272 + +1.6 229,272 + -1.1 229,272 + -1.7 229,272 + -0.4 229,272 + +0.4 229,272 + -0.5 229,272 + -1.1 229,272 + -1.1 229,272 + -0.4 229,272 + -0.8 229,272 + +0.6 229,272 + -1.1 229,273 - -1.3 229,273 - -0.6 229,273 - -0.7 229,273 - -0.1 229,273 - +0.0 229,273 - -1.6 229,273 - -1.3 229,273 - +0.4 229,273 - +1.0 229,273 - -0.3 229,273 - +1.0 229,273 - -1.5 229,273 - -0.6 229,273 - -0.9 229,273 - -1.8 229,273 - -0.8 229,273 - -0.8 229,273 - -0.4 229,274 + +0.2 229,274 + -0.4 229,275 - -1.4 229,275 - +0.8 229,275 - +0.8 229,295 + +0.1 229,296 - -1.1 229,422 + +0.6 229,422 + -0.1 229,422 + -0.6 229,422 + -0.6 229,422 + +0.2 229,422 + +0.5 229,422 + -1.3 229,422 + -0.6 229,422 + -0.9 229,422 + -0.1 229,422 + +0.4 229,422 + +0.2 229,476 + -0.7 229,477 - -0.1 229,477 - -0.9 229,477 - +0.8 229,477 - +0.3 229,529 + +0.2 229,529 + -2.3 229,529 + -0.1 229,529 + -0.3 229,529 + +0.5 229,529 + -0.6 229,529 + -1.0 229,529 + +0.6 229,529 + -0.8 229,530 - -1.6 229,530 - +0.0 229,530 - -0.3 229,530 - -0.7 229,530 - -0.5 229,530 - -1.9 229,561 + -0.8 229,561 + -1.3 229,561 + +1.2 229,562 - -0.1 229,616 + -1.7 229,616 + -0.1 229,616 + +1.5 229,616 + -2.2 229,616 + +0.3 229,738 + -0.5 229,738 + -0.3 229,738 + -0.4 229,738 + -1.1 229,782 + -0.1 229,782 + -0.6 229,782 + +1.2 229,782 + -0.3 229,782 + -1.1 229,782 + +1.0 229,782 + -1.5 229,782 + -1.7 229,782 + -0.0 229,782 + -0.3 229,782 + +0.0 229,782 + -1.4 229,984 + -0.4 229,984 + -0.1 229,984 + -1.2 230,032 + MPMX19_00227 0.11 -0.4 230,032 + MPMX19_00227 0.11 +0.6 230,032 + MPMX19_00227 0.11 +0.1 230,032 + MPMX19_00227 0.11 -0.6 230,032 + MPMX19_00227 0.11 -1.0 230,032 + MPMX19_00227 0.11 -0.5 230,032 + MPMX19_00227 0.11 +0.2 230,032 + MPMX19_00227 0.11 -1.0 230,032 + MPMX19_00227 0.11 -0.6 230,032 + MPMX19_00227 0.11 -0.5 230,032 + MPMX19_00227 0.11 -0.8 230,032 + MPMX19_00227 0.11 -1.8 230,032 + MPMX19_00227 0.11 +0.3 230,032 + MPMX19_00227 0.11 +0.6 230,032 + MPMX19_00227 0.11 +0.2 230,033 - MPMX19_00227 0.11 -1.5 230,161 + MPMX19_00227 0.18 -1.0 230,161 + MPMX19_00227 0.18 -0.7 230,161 + MPMX19_00227 0.18 +0.1 230,161 + MPMX19_00227 0.18 +1.2 230,161 + MPMX19_00227 0.18 -0.6 230,162 - MPMX19_00227 0.18 -0.6 230,162 - MPMX19_00227 0.18 -1.3
Or see this region's nucleotide sequence