Experiment: NL-CCM, start OD=0.3
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt MPMX19_00213 and MPMX19_00214 are separated by 149 nucleotides MPMX19_00214 and MPMX19_00215 are separated by 176 nucleotides MPMX19_00215 and MPMX19_00216 are separated by 444 nucleotides MPMX19_00216 and MPMX19_00217 are separated by 49 nucleotides
MPMX19_00213: MPMX19_00213 - Heme A synthase, at 215,842 to 216,915
_00213
MPMX19_00214: MPMX19_00214 - hypothetical protein, at 217,065 to 217,559
_00214
MPMX19_00215: MPMX19_00215 - hypothetical protein, at 217,736 to 217,972
_00215
MPMX19_00216: MPMX19_00216 - 10 kDa chaperonin 1, at 218,417 to 218,707
_00216
MPMX19_00217: MPMX19_00217 - 60 kDa chaperonin 5, at 218,757 to 220,400
_00217
Position (kb) 217
218 Strain fitness (log2 ratio) -2
-1
0
1
2 at 217.040 kb on - strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.052 kb on + strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.053 kb on - strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.060 kb on + strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.061 kb on - strand at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.195 kb on + strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.196 kb on - strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.231 kb on + strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.232 kb on - strand, within MPMX19_00214 at 217.453 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.486 kb on + strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.487 kb on - strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.498 kb on + strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.499 kb on - strand, within MPMX19_00214 at 217.622 kb on - strand at 217.738 kb on - strand at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.911 kb on + strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 217.912 kb on - strand, within MPMX19_00215 at 218.121 kb on + strand at 218.121 kb on + strand at 218.121 kb on + strand at 218.121 kb on + strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.122 kb on - strand at 218.231 kb on - strand at 218.244 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.325 kb on + strand at 218.356 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3 remove 217,040 - -0.1 217,052 + +0.6 217,052 + -0.6 217,052 + -1.4 217,052 + -0.1 217,052 + +0.5 217,052 + +0.5 217,052 + -0.4 217,052 + +0.8 217,052 + -0.8 217,052 + +0.2 217,052 + +0.1 217,052 + -1.3 217,052 + +1.0 217,052 + +0.5 217,052 + -0.5 217,052 + +0.2 217,053 - -0.8 217,053 - +1.5 217,053 - -0.1 217,053 - -0.8 217,053 - -0.8 217,053 - +0.8 217,053 - +0.5 217,053 - -0.9 217,053 - +0.1 217,053 - +0.9 217,053 - -0.1 217,053 - -0.6 217,053 - +0.3 217,053 - -0.3 217,053 - -0.1 217,053 - -0.5 217,053 - -0.4 217,053 - -1.0 217,053 - -0.9 217,053 - -0.6 217,053 - -0.5 217,060 + +0.7 217,060 + -0.4 217,060 + +0.2 217,060 + -0.5 217,060 + -0.3 217,060 + +0.4 217,060 + -0.5 217,060 + +0.6 217,060 + -0.3 217,060 + -2.5 217,060 + -0.1 217,060 + -2.5 217,060 + +0.7 217,060 + -0.5 217,060 + -0.2 217,060 + +0.4 217,060 + -1.9 217,060 + -1.5 217,060 + -1.2 217,060 + +1.0 217,060 + -1.3 217,060 + -0.1 217,060 + +0.3 217,060 + -0.7 217,060 + -1.4 217,060 + +0.6 217,060 + -0.4 217,060 + -0.9 217,060 + +0.2 217,060 + -0.3 217,060 + -1.5 217,060 + +0.2 217,060 + +0.3 217,060 + +0.2 217,061 - -0.5 217,061 - -1.7 217,061 - -0.3 217,061 - -0.8 217,061 - -1.7 217,061 - -1.5 217,061 - -0.3 217,061 - +0.2 217,061 - +0.2 217,061 - +0.8 217,061 - -0.3 217,061 - -0.5 217,061 - -0.4 217,061 - -0.1 217,061 - -0.1 217,061 - +0.6 217,061 - +0.5 217,061 - -0.3 217,061 - -1.2 217,061 - -0.9 217,061 - +0.6 217,061 - -0.5 217,061 - -0.2 217,061 - +0.5 217,061 - -0.9 217,061 - -0.5 217,061 - +0.8 217,061 - -1.0 217,061 - -2.1 217,061 - -0.2 217,061 - -1.6 217,061 - -0.2 217,061 - -1.4 217,061 - -1.1 217,061 - -0.8 217,061 - +0.6 217,061 - +0.5 217,061 - -0.1 217,061 - -0.4 217,061 - +0.1 217,195 + MPMX19_00214 0.26 -0.8 217,195 + MPMX19_00214 0.26 +0.5 217,195 + MPMX19_00214 0.26 +0.1 217,195 + MPMX19_00214 0.26 +0.1 217,195 + MPMX19_00214 0.26 -0.8 217,195 + MPMX19_00214 0.26 -0.2 217,195 + MPMX19_00214 0.26 -0.3 217,195 + MPMX19_00214 0.26 -0.2 217,195 + MPMX19_00214 0.26 -0.8 217,195 + MPMX19_00214 0.26 +0.3 217,195 + MPMX19_00214 0.26 -1.7 217,196 - MPMX19_00214 0.26 -0.6 217,196 - MPMX19_00214 0.26 -1.3 217,196 - MPMX19_00214 0.26 -1.7 217,196 - MPMX19_00214 0.26 -0.9 217,196 - MPMX19_00214 0.26 -1.3 217,196 - MPMX19_00214 0.26 -0.2 217,196 - MPMX19_00214 0.26 -0.7 217,196 - MPMX19_00214 0.26 -0.1 217,196 - MPMX19_00214 0.26 +0.1 217,196 - MPMX19_00214 0.26 -0.8 217,196 - MPMX19_00214 0.26 +0.2 217,231 + MPMX19_00214 0.34 -0.1 217,231 + MPMX19_00214 0.34 +0.3 217,231 + MPMX19_00214 0.34 +0.0 217,231 + MPMX19_00214 0.34 -0.0 217,231 + MPMX19_00214 0.34 -1.0 217,231 + MPMX19_00214 0.34 -1.6 217,231 + MPMX19_00214 0.34 -0.4 217,231 + MPMX19_00214 0.34 -1.0 217,231 + MPMX19_00214 0.34 +0.1 217,232 - MPMX19_00214 0.34 +0.5 217,232 - MPMX19_00214 0.34 +0.2 217,232 - MPMX19_00214 0.34 -0.8 217,232 - MPMX19_00214 0.34 -0.1 217,232 - MPMX19_00214 0.34 -0.5 217,232 - MPMX19_00214 0.34 -1.2 217,232 - MPMX19_00214 0.34 -0.8 217,232 - MPMX19_00214 0.34 +1.6 217,453 + MPMX19_00214 0.78 -2.2 217,486 + MPMX19_00214 0.85 -0.4 217,486 + MPMX19_00214 0.85 +0.2 217,486 + MPMX19_00214 0.85 +0.2 217,486 + MPMX19_00214 0.85 -0.7 217,486 + MPMX19_00214 0.85 +1.0 217,486 + MPMX19_00214 0.85 +0.6 217,486 + MPMX19_00214 0.85 -0.2 217,486 + MPMX19_00214 0.85 -0.1 217,486 + MPMX19_00214 0.85 -0.5 217,486 + MPMX19_00214 0.85 -0.6 217,486 + MPMX19_00214 0.85 -1.2 217,486 + MPMX19_00214 0.85 +0.1 217,486 + MPMX19_00214 0.85 -0.1 217,487 - MPMX19_00214 0.85 -0.7 217,487 - MPMX19_00214 0.85 -0.5 217,487 - MPMX19_00214 0.85 +0.2 217,487 - MPMX19_00214 0.85 +0.7 217,487 - MPMX19_00214 0.85 -0.5 217,487 - MPMX19_00214 0.85 -1.6 217,487 - MPMX19_00214 0.85 -1.1 217,487 - MPMX19_00214 0.85 -0.4 217,487 - MPMX19_00214 0.85 +2.2 217,487 - MPMX19_00214 0.85 +0.6 217,487 - MPMX19_00214 0.85 -0.4 217,487 - MPMX19_00214 0.85 -1.0 217,487 - MPMX19_00214 0.85 -1.3 217,487 - MPMX19_00214 0.85 -1.2 217,487 - MPMX19_00214 0.85 +0.4 217,498 + MPMX19_00214 0.87 +0.6 217,498 + MPMX19_00214 0.87 -0.3 217,498 + MPMX19_00214 0.87 +0.0 217,498 + MPMX19_00214 0.87 -0.1 217,498 + MPMX19_00214 0.87 -0.5 217,498 + MPMX19_00214 0.87 -0.2 217,498 + MPMX19_00214 0.87 -0.1 217,498 + MPMX19_00214 0.87 -1.0 217,498 + MPMX19_00214 0.87 -0.9 217,499 - MPMX19_00214 0.88 -1.4 217,499 - MPMX19_00214 0.88 -0.4 217,499 - MPMX19_00214 0.88 +1.2 217,499 - MPMX19_00214 0.88 -1.1 217,499 - MPMX19_00214 0.88 +0.6 217,622 - +0.1 217,738 - -1.3 217,911 + MPMX19_00215 0.74 -0.1 217,911 + MPMX19_00215 0.74 -1.6 217,911 + MPMX19_00215 0.74 -0.3 217,911 + MPMX19_00215 0.74 -1.1 217,911 + MPMX19_00215 0.74 -1.1 217,911 + MPMX19_00215 0.74 +0.0 217,911 + MPMX19_00215 0.74 -0.1 217,911 + MPMX19_00215 0.74 -1.3 217,911 + MPMX19_00215 0.74 -0.5 217,911 + MPMX19_00215 0.74 -0.2 217,911 + MPMX19_00215 0.74 -1.3 217,911 + MPMX19_00215 0.74 -0.5 217,911 + MPMX19_00215 0.74 -0.4 217,911 + MPMX19_00215 0.74 +0.4 217,911 + MPMX19_00215 0.74 -1.4 217,911 + MPMX19_00215 0.74 -0.9 217,911 + MPMX19_00215 0.74 -1.4 217,912 - MPMX19_00215 0.74 -1.5 217,912 - MPMX19_00215 0.74 -0.4 217,912 - MPMX19_00215 0.74 +1.4 217,912 - MPMX19_00215 0.74 -0.6 217,912 - MPMX19_00215 0.74 +0.2 217,912 - MPMX19_00215 0.74 -2.0 217,912 - MPMX19_00215 0.74 -1.0 217,912 - MPMX19_00215 0.74 +1.2 217,912 - MPMX19_00215 0.74 +0.6 217,912 - MPMX19_00215 0.74 -0.2 217,912 - MPMX19_00215 0.74 -1.1 217,912 - MPMX19_00215 0.74 -0.5 217,912 - MPMX19_00215 0.74 +0.6 217,912 - MPMX19_00215 0.74 +0.2 217,912 - MPMX19_00215 0.74 -0.3 217,912 - MPMX19_00215 0.74 -1.1 217,912 - MPMX19_00215 0.74 -0.6 217,912 - MPMX19_00215 0.74 +0.1 217,912 - MPMX19_00215 0.74 -0.6 218,121 + +0.2 218,121 + -1.3 218,121 + -0.3 218,121 + +0.6 218,122 - -0.8 218,122 - +2.0 218,122 - +0.4 218,122 - -1.9 218,122 - -1.2 218,122 - -0.6 218,122 - -1.5 218,122 - -1.3 218,231 - +0.0 218,244 + +1.7 218,325 + -1.5 218,325 + -1.4 218,325 + +0.4 218,325 + -0.4 218,356 + +0.3
Or see this region's nucleotide sequence