Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00181

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00179 and MPMX19_00180 are separated by 55 nucleotidesMPMX19_00180 and MPMX19_00181 are separated by 2 nucleotidesMPMX19_00181 and MPMX19_00182 are separated by 74 nucleotidesMPMX19_00182 and MPMX19_00183 overlap by 1 nucleotides MPMX19_00179: MPMX19_00179 - hypothetical protein, at 189,769 to 190,614 _00179 MPMX19_00180: MPMX19_00180 - hypothetical protein, at 190,670 to 191,221 _00180 MPMX19_00181: MPMX19_00181 - hypothetical protein, at 191,224 to 191,490 _00181 MPMX19_00182: MPMX19_00182 - hypothetical protein, at 191,565 to 192,326 _00182 MPMX19_00183: MPMX19_00183 - hypothetical protein, at 192,326 to 192,571 _00183 Position (kb) 191 192Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 190.335 kb on + strand, within MPMX19_00179at 190.336 kb on - strand, within MPMX19_00179at 190.336 kb on - strand, within MPMX19_00179at 190.336 kb on - strand, within MPMX19_00179at 190.336 kb on - strand, within MPMX19_00179at 190.444 kb on + strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.445 kb on - strand, within MPMX19_00179at 190.446 kb on + strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.447 kb on - strand, within MPMX19_00179at 190.513 kb on - strand, within MPMX19_00179at 190.526 kb on - strand, within MPMX19_00179at 190.529 kb on - strand, within MPMX19_00179at 190.556 kb on - strandat 190.607 kb on - strandat 190.607 kb on - strandat 190.607 kb on - strandat 190.607 kb on - strandat 190.607 kb on - strandat 190.613 kb on - strandat 190.613 kb on - strandat 190.613 kb on - strandat 190.613 kb on - strandat 190.613 kb on - strandat 190.613 kb on - strandat 190.641 kb on + strandat 190.642 kb on - strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.655 kb on + strandat 190.656 kb on - strandat 190.656 kb on - strandat 190.656 kb on - strandat 190.656 kb on - strandat 190.656 kb on - strandat 190.906 kb on + strand, within MPMX19_00180at 190.907 kb on - strand, within MPMX19_00180at 190.907 kb on - strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.920 kb on + strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.921 kb on - strand, within MPMX19_00180at 190.931 kb on + strand, within MPMX19_00180at 190.931 kb on + strand, within MPMX19_00180at 190.931 kb on + strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 190.932 kb on - strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.105 kb on + strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.106 kb on - strand, within MPMX19_00180at 191.125 kb on + strand, within MPMX19_00180at 191.125 kb on + strand, within MPMX19_00180at 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.182 kb on + strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.183 kb on - strandat 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.311 kb on + strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.312 kb on - strand, within MPMX19_00181at 191.631 kb on + strandat 191.632 kb on - strandat 191.674 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.714 kb on - strand, within MPMX19_00182at 191.770 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182at 191.840 kb on + strand, within MPMX19_00182

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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190,335 + MPMX19_00179 0.67 -0.1
190,336 - MPMX19_00179 0.67 -0.4
190,336 - MPMX19_00179 0.67 +1.0
190,336 - MPMX19_00179 0.67 -1.1
190,336 - MPMX19_00179 0.67 -0.6
190,444 + MPMX19_00179 0.80 -1.3
190,445 - MPMX19_00179 0.80 -0.9
190,445 - MPMX19_00179 0.80 -0.2
190,445 - MPMX19_00179 0.80 -0.9
190,445 - MPMX19_00179 0.80 +0.2
190,445 - MPMX19_00179 0.80 -0.1
190,445 - MPMX19_00179 0.80 -0.6
190,446 + MPMX19_00179 0.80 +0.1
190,447 - MPMX19_00179 0.80 +0.5
190,447 - MPMX19_00179 0.80 +1.0
190,447 - MPMX19_00179 0.80 -0.7
190,447 - MPMX19_00179 0.80 -0.3
190,447 - MPMX19_00179 0.80 -1.1
190,447 - MPMX19_00179 0.80 -0.4
190,447 - MPMX19_00179 0.80 +0.1
190,447 - MPMX19_00179 0.80 +0.6
190,447 - MPMX19_00179 0.80 -1.1
190,447 - MPMX19_00179 0.80 -0.8
190,447 - MPMX19_00179 0.80 +1.2
190,447 - MPMX19_00179 0.80 -0.4
190,447 - MPMX19_00179 0.80 -0.1
190,447 - MPMX19_00179 0.80 -0.1
190,447 - MPMX19_00179 0.80 -2.1
190,447 - MPMX19_00179 0.80 -0.4
190,447 - MPMX19_00179 0.80 +0.0
190,447 - MPMX19_00179 0.80 +0.6
190,447 - MPMX19_00179 0.80 -0.4
190,447 - MPMX19_00179 0.80 -1.9
190,447 - MPMX19_00179 0.80 -0.4
190,513 - MPMX19_00179 0.88 +0.8
190,526 - MPMX19_00179 0.89 -1.1
190,529 - MPMX19_00179 0.90 +0.2
190,556 - -0.3
190,607 - -0.1
190,607 - -0.5
190,607 - +0.6
190,607 - -0.8
190,607 - -0.6
190,613 - -1.3
190,613 - -1.7
190,613 - -0.1
190,613 - +0.9
190,613 - +0.9
190,613 - -0.1
190,641 + +2.2
190,642 - -0.3
190,655 + -0.1
190,655 + +0.4
190,655 + +0.2
190,655 + +0.3
190,655 + -1.3
190,655 + -1.0
190,655 + -0.8
190,655 + -0.7
190,655 + -0.0
190,656 - +0.4
190,656 - +2.2
190,656 - -1.3
190,656 - -2.1
190,656 - -0.4
190,906 + MPMX19_00180 0.43 -0.5
190,907 - MPMX19_00180 0.43 +0.2
190,907 - MPMX19_00180 0.43 +0.0
190,920 + MPMX19_00180 0.45 +0.9
190,920 + MPMX19_00180 0.45 -0.5
190,920 + MPMX19_00180 0.45 +0.6
190,920 + MPMX19_00180 0.45 -2.4
190,920 + MPMX19_00180 0.45 +0.9
190,920 + MPMX19_00180 0.45 -1.4
190,920 + MPMX19_00180 0.45 +0.0
190,921 - MPMX19_00180 0.45 +0.2
190,921 - MPMX19_00180 0.45 -2.3
190,921 - MPMX19_00180 0.45 -0.1
190,921 - MPMX19_00180 0.45 -0.5
190,921 - MPMX19_00180 0.45 -1.6
190,921 - MPMX19_00180 0.45 -0.6
190,921 - MPMX19_00180 0.45 +0.6
190,931 + MPMX19_00180 0.47 +0.2
190,931 + MPMX19_00180 0.47 -0.8
190,931 + MPMX19_00180 0.47 +1.0
190,932 - MPMX19_00180 0.47 -0.4
190,932 - MPMX19_00180 0.47 -1.8
190,932 - MPMX19_00180 0.47 -2.1
190,932 - MPMX19_00180 0.47 -0.5
190,932 - MPMX19_00180 0.47 -0.0
190,932 - MPMX19_00180 0.47 -1.7
190,932 - MPMX19_00180 0.47 -0.5
190,932 - MPMX19_00180 0.47 -0.1
191,105 + MPMX19_00180 0.79 +2.2
191,105 + MPMX19_00180 0.79 +0.6
191,105 + MPMX19_00180 0.79 -1.1
191,105 + MPMX19_00180 0.79 -1.5
191,105 + MPMX19_00180 0.79 -0.9
191,105 + MPMX19_00180 0.79 +0.2
191,105 + MPMX19_00180 0.79 +0.6
191,105 + MPMX19_00180 0.79 +0.2
191,105 + MPMX19_00180 0.79 -0.6
191,105 + MPMX19_00180 0.79 +0.2
191,105 + MPMX19_00180 0.79 -1.1
191,106 - MPMX19_00180 0.79 -1.5
191,106 - MPMX19_00180 0.79 -0.8
191,106 - MPMX19_00180 0.79 +0.3
191,106 - MPMX19_00180 0.79 -0.5
191,106 - MPMX19_00180 0.79 -1.1
191,106 - MPMX19_00180 0.79 +0.8
191,106 - MPMX19_00180 0.79 -1.3
191,125 + MPMX19_00180 0.82 -1.1
191,125 + MPMX19_00180 0.82 +0.5
191,182 + -0.8
191,182 + -0.3
191,182 + -1.7
191,182 + -0.8
191,182 + -0.4
191,182 + -0.4
191,182 + +0.2
191,182 + +0.0
191,182 + +0.9
191,182 + +0.2
191,182 + -0.3
191,182 + -1.1
191,182 + -0.5
191,182 + +0.9
191,182 + -1.9
191,182 + -2.2
191,182 + -0.8
191,182 + -0.4
191,183 - -0.9
191,183 - -0.4
191,183 - +0.6
191,183 - -1.6
191,183 - +0.3
191,183 - -0.8
191,183 - +0.1
191,183 - -1.3
191,183 - +0.2
191,183 - -1.0
191,183 - +0.6
191,183 - -0.4
191,183 - -0.2
191,311 + MPMX19_00181 0.33 -0.8
191,311 + MPMX19_00181 0.33 -1.3
191,311 + MPMX19_00181 0.33 +0.4
191,311 + MPMX19_00181 0.33 -0.6
191,311 + MPMX19_00181 0.33 +1.2
191,311 + MPMX19_00181 0.33 -0.7
191,311 + MPMX19_00181 0.33 -0.6
191,312 - MPMX19_00181 0.33 -0.8
191,312 - MPMX19_00181 0.33 -1.1
191,312 - MPMX19_00181 0.33 -0.1
191,312 - MPMX19_00181 0.33 -1.9
191,312 - MPMX19_00181 0.33 +0.2
191,312 - MPMX19_00181 0.33 -0.4
191,312 - MPMX19_00181 0.33 -2.0
191,312 - MPMX19_00181 0.33 +0.2
191,312 - MPMX19_00181 0.33 -0.8
191,631 + +1.2
191,632 - -3.3
191,674 - MPMX19_00182 0.14 -1.1
191,714 - MPMX19_00182 0.20 +0.3
191,714 - MPMX19_00182 0.20 -0.7
191,770 + MPMX19_00182 0.27 -0.5
191,840 + MPMX19_00182 0.36 -1.5
191,840 + MPMX19_00182 0.36 -1.0

Or see this region's nucleotide sequence