Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00153

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00152 and MPMX19_00153 are separated by 31 nucleotidesMPMX19_00153 and MPMX19_00154 are separated by 14 nucleotidesMPMX19_00154 and MPMX19_00155 are separated by 8 nucleotides MPMX19_00152: MPMX19_00152 - hypothetical protein, at 161,164 to 162,177 _00152 MPMX19_00153: MPMX19_00153 - hypothetical protein, at 162,209 to 162,544 _00153 MPMX19_00154: MPMX19_00154 - hypothetical protein, at 162,559 to 163,077 _00154 MPMX19_00155: MPMX19_00155 - hypothetical protein, at 163,086 to 163,607 _00155 Position (kb) 162 163Strain fitness (log2 ratio) -2 -1 0 1at 161.229 kb on - strandat 161.257 kb on + strandat 161.258 kb on - strandat 161.258 kb on - strandat 161.306 kb on - strand, within MPMX19_00152at 161.355 kb on + strand, within MPMX19_00152at 161.356 kb on - strand, within MPMX19_00152at 161.501 kb on + strand, within MPMX19_00152at 161.561 kb on - strand, within MPMX19_00152at 162.104 kb on + strandat 162.125 kb on + strandat 162.223 kb on + strandat 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.296 kb on + strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.297 kb on - strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.362 kb on + strand, within MPMX19_00153at 162.368 kb on - strand, within MPMX19_00153at 162.376 kb on + strand, within MPMX19_00153at 162.377 kb on - strand, within MPMX19_00153at 162.377 kb on - strand, within MPMX19_00153at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.690 kb on + strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.691 kb on - strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.742 kb on + strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.743 kb on - strand, within MPMX19_00154at 162.767 kb on + strand, within MPMX19_00154at 162.767 kb on + strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.768 kb on - strand, within MPMX19_00154at 162.815 kb on - strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.886 kb on + strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 162.887 kb on - strand, within MPMX19_00154at 163.066 kb on - strandat 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.209 kb on + strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.210 kb on - strand, within MPMX19_00155at 163.438 kb on + strand, within MPMX19_00155at 163.481 kb on + strand, within MPMX19_00155at 163.499 kb on + strand, within MPMX19_00155at 163.499 kb on + strand, within MPMX19_00155at 163.499 kb on + strand, within MPMX19_00155at 163.499 kb on + strand, within MPMX19_00155at 163.499 kb on + strand, within MPMX19_00155at 163.500 kb on - strand, within MPMX19_00155at 163.500 kb on - strand, within MPMX19_00155at 163.500 kb on - strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.503 kb on + strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155at 163.504 kb on - strand, within MPMX19_00155

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
161,229 - -1.6
161,257 + -1.2
161,258 - -0.5
161,258 - -1.1
161,306 - MPMX19_00152 0.14 -0.9
161,355 + MPMX19_00152 0.19 -0.8
161,356 - MPMX19_00152 0.19 -1.4
161,501 + MPMX19_00152 0.33 -1.0
161,561 - MPMX19_00152 0.39 -1.0
162,104 + +1.2
162,125 + -0.7
162,223 + +1.0
162,296 + MPMX19_00153 0.26 +0.4
162,296 + MPMX19_00153 0.26 +0.2
162,296 + MPMX19_00153 0.26 -0.3
162,296 + MPMX19_00153 0.26 -1.0
162,296 + MPMX19_00153 0.26 -0.5
162,296 + MPMX19_00153 0.26 -1.1
162,297 - MPMX19_00153 0.26 +0.2
162,297 - MPMX19_00153 0.26 -0.5
162,297 - MPMX19_00153 0.26 -1.7
162,362 + MPMX19_00153 0.46 +0.1
162,362 + MPMX19_00153 0.46 -1.1
162,362 + MPMX19_00153 0.46 +1.4
162,362 + MPMX19_00153 0.46 -0.8
162,368 - MPMX19_00153 0.47 -1.0
162,376 + MPMX19_00153 0.50 +0.3
162,377 - MPMX19_00153 0.50 -1.9
162,377 - MPMX19_00153 0.50 -0.9
162,690 + MPMX19_00154 0.25 -1.1
162,690 + MPMX19_00154 0.25 -0.7
162,690 + MPMX19_00154 0.25 -0.3
162,690 + MPMX19_00154 0.25 +0.2
162,690 + MPMX19_00154 0.25 -1.4
162,691 - MPMX19_00154 0.25 -0.4
162,691 - MPMX19_00154 0.25 -0.1
162,691 - MPMX19_00154 0.25 -0.8
162,691 - MPMX19_00154 0.25 -0.4
162,691 - MPMX19_00154 0.25 -0.7
162,691 - MPMX19_00154 0.25 +0.1
162,742 + MPMX19_00154 0.35 +0.6
162,742 + MPMX19_00154 0.35 -1.4
162,742 + MPMX19_00154 0.35 -0.6
162,742 + MPMX19_00154 0.35 -1.7
162,742 + MPMX19_00154 0.35 +0.2
162,742 + MPMX19_00154 0.35 -1.6
162,742 + MPMX19_00154 0.35 -0.7
162,742 + MPMX19_00154 0.35 -0.2
162,742 + MPMX19_00154 0.35 +1.0
162,742 + MPMX19_00154 0.35 -1.2
162,742 + MPMX19_00154 0.35 -0.9
162,742 + MPMX19_00154 0.35 -1.4
162,742 + MPMX19_00154 0.35 -0.4
162,742 + MPMX19_00154 0.35 +1.2
162,742 + MPMX19_00154 0.35 -1.3
162,743 - MPMX19_00154 0.35 -0.3
162,743 - MPMX19_00154 0.35 -1.7
162,743 - MPMX19_00154 0.35 +0.6
162,743 - MPMX19_00154 0.35 -0.3
162,743 - MPMX19_00154 0.35 -1.2
162,743 - MPMX19_00154 0.35 -0.8
162,743 - MPMX19_00154 0.35 -2.1
162,743 - MPMX19_00154 0.35 -0.6
162,743 - MPMX19_00154 0.35 -0.9
162,743 - MPMX19_00154 0.35 -1.0
162,743 - MPMX19_00154 0.35 +0.6
162,743 - MPMX19_00154 0.35 -0.1
162,743 - MPMX19_00154 0.35 -0.2
162,743 - MPMX19_00154 0.35 -2.2
162,743 - MPMX19_00154 0.35 -0.0
162,743 - MPMX19_00154 0.35 -2.3
162,767 + MPMX19_00154 0.40 -1.3
162,767 + MPMX19_00154 0.40 -1.2
162,768 - MPMX19_00154 0.40 -1.0
162,768 - MPMX19_00154 0.40 -0.9
162,768 - MPMX19_00154 0.40 -0.1
162,768 - MPMX19_00154 0.40 -1.0
162,815 - MPMX19_00154 0.49 +0.6
162,886 + MPMX19_00154 0.63 -1.7
162,886 + MPMX19_00154 0.63 -0.0
162,886 + MPMX19_00154 0.63 -1.7
162,886 + MPMX19_00154 0.63 +0.3
162,886 + MPMX19_00154 0.63 -1.2
162,886 + MPMX19_00154 0.63 +1.0
162,886 + MPMX19_00154 0.63 +0.2
162,886 + MPMX19_00154 0.63 -1.0
162,886 + MPMX19_00154 0.63 +0.7
162,886 + MPMX19_00154 0.63 -0.6
162,886 + MPMX19_00154 0.63 +0.4
162,886 + MPMX19_00154 0.63 -1.1
162,886 + MPMX19_00154 0.63 -0.0
162,886 + MPMX19_00154 0.63 -0.6
162,887 - MPMX19_00154 0.63 +0.2
162,887 - MPMX19_00154 0.63 +1.6
162,887 - MPMX19_00154 0.63 +0.6
162,887 - MPMX19_00154 0.63 +0.0
162,887 - MPMX19_00154 0.63 -1.4
162,887 - MPMX19_00154 0.63 +0.4
162,887 - MPMX19_00154 0.63 -0.7
163,066 - +0.2
163,209 + MPMX19_00155 0.24 -0.8
163,209 + MPMX19_00155 0.24 +1.2
163,209 + MPMX19_00155 0.24 -0.1
163,209 + MPMX19_00155 0.24 -0.9
163,209 + MPMX19_00155 0.24 +1.0
163,209 + MPMX19_00155 0.24 -0.8
163,209 + MPMX19_00155 0.24 -0.9
163,209 + MPMX19_00155 0.24 -0.4
163,209 + MPMX19_00155 0.24 +0.2
163,209 + MPMX19_00155 0.24 -0.3
163,210 - MPMX19_00155 0.24 -1.3
163,210 - MPMX19_00155 0.24 -1.8
163,210 - MPMX19_00155 0.24 +0.2
163,210 - MPMX19_00155 0.24 -1.9
163,210 - MPMX19_00155 0.24 +0.8
163,210 - MPMX19_00155 0.24 -1.5
163,210 - MPMX19_00155 0.24 -1.1
163,210 - MPMX19_00155 0.24 -0.8
163,210 - MPMX19_00155 0.24 -0.4
163,210 - MPMX19_00155 0.24 -1.1
163,210 - MPMX19_00155 0.24 -1.0
163,210 - MPMX19_00155 0.24 -1.1
163,210 - MPMX19_00155 0.24 -0.1
163,210 - MPMX19_00155 0.24 +0.4
163,438 + MPMX19_00155 0.67 -0.1
163,481 + MPMX19_00155 0.76 -1.3
163,499 + MPMX19_00155 0.79 -1.9
163,499 + MPMX19_00155 0.79 +0.1
163,499 + MPMX19_00155 0.79 -1.3
163,499 + MPMX19_00155 0.79 -0.2
163,499 + MPMX19_00155 0.79 +0.9
163,500 - MPMX19_00155 0.79 -0.8
163,500 - MPMX19_00155 0.79 +0.5
163,500 - MPMX19_00155 0.79 -1.0
163,503 + MPMX19_00155 0.80 -0.8
163,503 + MPMX19_00155 0.80 -0.0
163,503 + MPMX19_00155 0.80 -1.4
163,503 + MPMX19_00155 0.80 +0.1
163,503 + MPMX19_00155 0.80 -0.4
163,503 + MPMX19_00155 0.80 -1.6
163,503 + MPMX19_00155 0.80 -0.1
163,503 + MPMX19_00155 0.80 -0.1
163,503 + MPMX19_00155 0.80 -0.1
163,503 + MPMX19_00155 0.80 -0.9
163,503 + MPMX19_00155 0.80 -0.9
163,503 + MPMX19_00155 0.80 -0.4
163,503 + MPMX19_00155 0.80 +0.6
163,503 + MPMX19_00155 0.80 +0.1
163,504 - MPMX19_00155 0.80 -1.5
163,504 - MPMX19_00155 0.80 +0.6
163,504 - MPMX19_00155 0.80 -1.7
163,504 - MPMX19_00155 0.80 -0.5
163,504 - MPMX19_00155 0.80 -0.9
163,504 - MPMX19_00155 0.80 -0.8
163,504 - MPMX19_00155 0.80 -0.6
163,504 - MPMX19_00155 0.80 +1.2
163,504 - MPMX19_00155 0.80 -0.5
163,504 - MPMX19_00155 0.80 -1.5
163,504 - MPMX19_00155 0.80 -0.6
163,504 - MPMX19_00155 0.80 +0.2
163,504 - MPMX19_00155 0.80 -0.8
163,504 - MPMX19_00155 0.80 -0.6
163,504 - MPMX19_00155 0.80 -0.5

Or see this region's nucleotide sequence