Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00085

Experiment: NL-CCM, start OD=0.3

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntMPMX19_00084 and MPMX19_00085 are separated by 373 nucleotidesMPMX19_00085 and MPMX19_00086 are separated by 60 nucleotides MPMX19_00084: MPMX19_00084 - Phenylalanine--tRNA ligase beta subunit, at 89,040 to 91,451 _00084 MPMX19_00085: MPMX19_00085 - hypothetical protein, at 91,825 to 92,238 _00085 MPMX19_00086: MPMX19_00086 - 3'3'-cGAMP-specific phosphodiesterase 2, at 92,299 to 94,113 _00086 Position (kb) 91 92 93Strain fitness (log2 ratio) -2 -1 0 1 2 3at 91.481 kb on + strandat 91.482 kb on - strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.485 kb on + strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.486 kb on - strandat 91.531 kb on + strandat 91.531 kb on + strandat 91.532 kb on - strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.564 kb on + strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.565 kb on - strandat 91.583 kb on - strandat 91.583 kb on - strandat 91.825 kb on - strandat 91.945 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.035 kb on + strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.036 kb on - strand, within MPMX19_00085at 92.237 kb on - strandat 92.251 kb on + strandat 92.252 kb on - strandat 92.445 kb on - strandat 92.445 kb on - strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.471 kb on + strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.472 kb on - strandat 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.655 kb on + strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 92.656 kb on - strand, within MPMX19_00086at 93.020 kb on + strand, within MPMX19_00086at 93.020 kb on + strand, within MPMX19_00086at 93.021 kb on - strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.032 kb on + strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.033 kb on - strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.128 kb on + strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.129 kb on - strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.164 kb on + strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086at 93.165 kb on - strand, within MPMX19_00086

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
remove
91,481 + +0.3
91,482 - -0.8
91,485 + +1.0
91,485 + +0.3
91,485 + -0.1
91,485 + +0.8
91,485 + +0.4
91,485 + -0.6
91,486 - +0.0
91,486 - -1.9
91,486 - -0.6
91,486 - -1.3
91,486 - +0.0
91,486 - -0.7
91,486 - +0.3
91,531 + -2.1
91,531 + -0.0
91,532 - -0.1
91,564 + -1.0
91,564 + -1.6
91,564 + +0.6
91,564 + -1.1
91,565 - -0.8
91,565 - -2.2
91,565 - -0.1
91,565 - +0.8
91,583 - -1.4
91,583 - -0.7
91,825 - -0.6
91,945 + MPMX19_00085 0.29 -0.1
92,035 + MPMX19_00085 0.51 -0.2
92,035 + MPMX19_00085 0.51 -0.9
92,035 + MPMX19_00085 0.51 +1.6
92,035 + MPMX19_00085 0.51 +0.2
92,035 + MPMX19_00085 0.51 -0.4
92,035 + MPMX19_00085 0.51 +1.0
92,035 + MPMX19_00085 0.51 -0.9
92,035 + MPMX19_00085 0.51 -0.8
92,036 - MPMX19_00085 0.51 -1.8
92,036 - MPMX19_00085 0.51 +0.9
92,036 - MPMX19_00085 0.51 +1.8
92,036 - MPMX19_00085 0.51 -0.8
92,036 - MPMX19_00085 0.51 -1.2
92,036 - MPMX19_00085 0.51 +1.6
92,036 - MPMX19_00085 0.51 -1.0
92,036 - MPMX19_00085 0.51 -1.7
92,036 - MPMX19_00085 0.51 +0.0
92,036 - MPMX19_00085 0.51 +0.8
92,237 - +0.1
92,251 + -1.0
92,252 - -0.1
92,445 - -0.0
92,445 - -0.1
92,471 + -1.1
92,471 + +0.7
92,471 + +0.9
92,471 + -0.1
92,471 + -0.3
92,472 - -1.5
92,472 - +0.5
92,472 - +0.7
92,472 - -1.7
92,472 - -0.3
92,472 - -1.4
92,472 - -1.7
92,472 - -1.1
92,655 + MPMX19_00086 0.20 -1.1
92,655 + MPMX19_00086 0.20 -0.6
92,655 + MPMX19_00086 0.20 +0.8
92,655 + MPMX19_00086 0.20 -0.6
92,655 + MPMX19_00086 0.20 -1.1
92,655 + MPMX19_00086 0.20 -0.6
92,655 + MPMX19_00086 0.20 +1.0
92,655 + MPMX19_00086 0.20 -0.6
92,655 + MPMX19_00086 0.20 -1.5
92,655 + MPMX19_00086 0.20 -0.9
92,655 + MPMX19_00086 0.20 -0.5
92,655 + MPMX19_00086 0.20 -1.7
92,655 + MPMX19_00086 0.20 -0.1
92,655 + MPMX19_00086 0.20 -0.1
92,655 + MPMX19_00086 0.20 +0.4
92,655 + MPMX19_00086 0.20 -0.6
92,655 + MPMX19_00086 0.20 -1.6
92,655 + MPMX19_00086 0.20 -1.0
92,655 + MPMX19_00086 0.20 -0.5
92,655 + MPMX19_00086 0.20 -0.0
92,655 + MPMX19_00086 0.20 -2.2
92,655 + MPMX19_00086 0.20 +0.3
92,656 - MPMX19_00086 0.20 -0.8
92,656 - MPMX19_00086 0.20 -1.7
92,656 - MPMX19_00086 0.20 +0.3
92,656 - MPMX19_00086 0.20 +0.2
92,656 - MPMX19_00086 0.20 -0.6
92,656 - MPMX19_00086 0.20 +0.6
92,656 - MPMX19_00086 0.20 -0.1
92,656 - MPMX19_00086 0.20 -1.0
92,656 - MPMX19_00086 0.20 -1.0
92,656 - MPMX19_00086 0.20 -1.3
92,656 - MPMX19_00086 0.20 +2.8
92,656 - MPMX19_00086 0.20 -0.3
92,656 - MPMX19_00086 0.20 -0.4
92,656 - MPMX19_00086 0.20 -1.0
92,656 - MPMX19_00086 0.20 -0.3
92,656 - MPMX19_00086 0.20 -0.1
92,656 - MPMX19_00086 0.20 -0.7
92,656 - MPMX19_00086 0.20 -0.3
92,656 - MPMX19_00086 0.20 +0.6
92,656 - MPMX19_00086 0.20 +0.3
92,656 - MPMX19_00086 0.20 -2.1
93,020 + MPMX19_00086 0.40 +0.9
93,020 + MPMX19_00086 0.40 -0.8
93,021 - MPMX19_00086 0.40 -0.1
93,032 + MPMX19_00086 0.40 -0.9
93,032 + MPMX19_00086 0.40 +1.0
93,032 + MPMX19_00086 0.40 -0.8
93,032 + MPMX19_00086 0.40 -1.3
93,033 - MPMX19_00086 0.40 +0.0
93,033 - MPMX19_00086 0.40 +0.2
93,033 - MPMX19_00086 0.40 -1.4
93,033 - MPMX19_00086 0.40 -0.1
93,128 + MPMX19_00086 0.46 -1.2
93,128 + MPMX19_00086 0.46 -0.7
93,128 + MPMX19_00086 0.46 +0.1
93,128 + MPMX19_00086 0.46 +0.2
93,128 + MPMX19_00086 0.46 -1.2
93,128 + MPMX19_00086 0.46 -0.3
93,129 - MPMX19_00086 0.46 -1.3
93,129 - MPMX19_00086 0.46 +0.6
93,129 - MPMX19_00086 0.46 -1.1
93,129 - MPMX19_00086 0.46 -2.3
93,129 - MPMX19_00086 0.46 -0.6
93,129 - MPMX19_00086 0.46 +0.5
93,129 - MPMX19_00086 0.46 -1.3
93,129 - MPMX19_00086 0.46 -0.8
93,129 - MPMX19_00086 0.46 +0.2
93,164 + MPMX19_00086 0.48 -1.1
93,164 + MPMX19_00086 0.48 +0.4
93,164 + MPMX19_00086 0.48 -1.9
93,164 + MPMX19_00086 0.48 +0.2
93,165 - MPMX19_00086 0.48 -0.1
93,165 - MPMX19_00086 0.48 -0.3
93,165 - MPMX19_00086 0.48 +1.0
93,165 - MPMX19_00086 0.48 -1.5
93,165 - MPMX19_00086 0.48 -0.2
93,165 - MPMX19_00086 0.48 -0.5

Or see this region's nucleotide sequence