Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00034

Experiment: NL-CCM, start OD=0.3

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntMPMX19_00033 and MPMX19_00034 overlap by 4 nucleotidesMPMX19_00034 and MPMX19_00035 are separated by 26 nucleotidesMPMX19_00035 and MPMX19_00036 are separated by 13 nucleotides MPMX19_00033: MPMX19_00033 - hypothetical protein, at 38,742 to 39,230 _00033 MPMX19_00034: MPMX19_00034 - hypothetical protein, at 39,227 to 39,724 _00034 MPMX19_00035: MPMX19_00035 - hypothetical protein, at 39,751 to 40,218 _00035 MPMX19_00036: MPMX19_00036 - hypothetical protein, at 40,232 to 40,786 _00036 Position (kb) 39 40Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 38.540 kb on + strandat 38.540 kb on + strandat 38.593 kb on + strandat 38.627 kb on + strandat 38.654 kb on + strandat 38.655 kb on - strandat 38.655 kb on - strandat 38.655 kb on - strandat 38.683 kb on + strandat 38.684 kb on - strandat 39.171 kb on + strand, within MPMX19_00033at 39.172 kb on - strand, within MPMX19_00033at 39.172 kb on - strand, within MPMX19_00033at 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.226 kb on + strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.227 kb on - strandat 39.432 kb on - strand, within MPMX19_00034at 39.432 kb on - strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.532 kb on + strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.533 kb on - strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.540 kb on + strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.541 kb on - strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.602 kb on + strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.603 kb on - strand, within MPMX19_00034at 39.722 kb on + strandat 39.722 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.734 kb on + strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.735 kb on - strandat 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.906 kb on + strand, within MPMX19_00035at 39.907 kb on - strand, within MPMX19_00035at 39.907 kb on - strand, within MPMX19_00035at 39.953 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.988 kb on + strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 39.989 kb on - strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.015 kb on + strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.016 kb on - strand, within MPMX19_00035at 40.198 kb on + strandat 40.198 kb on + strandat 40.199 kb on - strandat 40.266 kb on + strandat 40.266 kb on + strandat 40.267 kb on - strandat 40.267 kb on - strandat 40.324 kb on + strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.325 kb on - strand, within MPMX19_00036at 40.438 kb on + strand, within MPMX19_00036at 40.438 kb on + strand, within MPMX19_00036at 40.439 kb on - strand, within MPMX19_00036

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Per-strain Table

Position Strand Gene LocusTag Fraction NL-CCM, start OD=0.3
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38,540 + -0.1
38,540 + -0.3
38,593 + +0.9
38,627 + +0.9
38,654 + -0.8
38,655 - -0.6
38,655 - -0.5
38,655 - -0.2
38,683 + +1.2
38,684 - -1.3
39,171 + MPMX19_00033 0.88 +0.1
39,172 - MPMX19_00033 0.88 +0.5
39,172 - MPMX19_00033 0.88 +0.2
39,226 + -0.1
39,226 + -0.4
39,226 + -0.4
39,226 + -0.6
39,226 + +0.2
39,226 + +0.6
39,226 + -1.6
39,226 + -1.6
39,226 + +0.6
39,227 - -0.3
39,227 - +0.2
39,227 - -1.4
39,227 - -0.5
39,227 - -0.6
39,227 - +1.5
39,227 - -0.3
39,227 - -1.3
39,227 - -0.6
39,227 - +1.3
39,432 - MPMX19_00034 0.41 -0.7
39,432 - MPMX19_00034 0.41 -1.4
39,532 + MPMX19_00034 0.61 -0.4
39,532 + MPMX19_00034 0.61 +0.3
39,532 + MPMX19_00034 0.61 +0.3
39,533 - MPMX19_00034 0.61 -0.4
39,533 - MPMX19_00034 0.61 -1.0
39,533 - MPMX19_00034 0.61 +0.2
39,533 - MPMX19_00034 0.61 +0.1
39,540 + MPMX19_00034 0.63 -1.9
39,540 + MPMX19_00034 0.63 +1.0
39,540 + MPMX19_00034 0.63 +1.2
39,540 + MPMX19_00034 0.63 +1.6
39,540 + MPMX19_00034 0.63 -1.0
39,540 + MPMX19_00034 0.63 -1.1
39,540 + MPMX19_00034 0.63 -0.8
39,540 + MPMX19_00034 0.63 +1.9
39,540 + MPMX19_00034 0.63 +0.3
39,540 + MPMX19_00034 0.63 -1.4
39,540 + MPMX19_00034 0.63 -0.3
39,540 + MPMX19_00034 0.63 +1.2
39,540 + MPMX19_00034 0.63 +0.4
39,540 + MPMX19_00034 0.63 -0.1
39,540 + MPMX19_00034 0.63 -1.4
39,540 + MPMX19_00034 0.63 +0.4
39,540 + MPMX19_00034 0.63 -1.6
39,540 + MPMX19_00034 0.63 -0.5
39,540 + MPMX19_00034 0.63 -1.0
39,540 + MPMX19_00034 0.63 -1.5
39,540 + MPMX19_00034 0.63 +0.5
39,540 + MPMX19_00034 0.63 -0.4
39,541 - MPMX19_00034 0.63 +1.4
39,541 - MPMX19_00034 0.63 +1.0
39,541 - MPMX19_00034 0.63 +1.7
39,541 - MPMX19_00034 0.63 -0.6
39,541 - MPMX19_00034 0.63 -0.6
39,541 - MPMX19_00034 0.63 -0.9
39,541 - MPMX19_00034 0.63 -0.1
39,541 - MPMX19_00034 0.63 -1.7
39,541 - MPMX19_00034 0.63 -0.6
39,541 - MPMX19_00034 0.63 -0.6
39,541 - MPMX19_00034 0.63 +0.9
39,541 - MPMX19_00034 0.63 +0.8
39,541 - MPMX19_00034 0.63 +0.0
39,541 - MPMX19_00034 0.63 -0.7
39,541 - MPMX19_00034 0.63 +1.0
39,602 + MPMX19_00034 0.75 -3.1
39,602 + MPMX19_00034 0.75 -1.1
39,602 + MPMX19_00034 0.75 +0.5
39,602 + MPMX19_00034 0.75 +0.3
39,603 - MPMX19_00034 0.76 -0.6
39,603 - MPMX19_00034 0.76 +1.2
39,603 - MPMX19_00034 0.76 -0.6
39,603 - MPMX19_00034 0.76 -1.4
39,603 - MPMX19_00034 0.76 -0.4
39,603 - MPMX19_00034 0.76 +0.1
39,722 + +0.6
39,722 + +0.3
39,734 + +0.2
39,734 + -0.6
39,734 + -1.0
39,734 + -0.1
39,734 + +0.1
39,735 - -0.3
39,735 - +1.8
39,735 - +1.2
39,735 - -1.1
39,735 - -0.2
39,735 - -1.5
39,735 - -1.9
39,906 + MPMX19_00035 0.33 -0.4
39,906 + MPMX19_00035 0.33 +0.6
39,906 + MPMX19_00035 0.33 +0.6
39,906 + MPMX19_00035 0.33 -0.8
39,907 - MPMX19_00035 0.33 +0.4
39,907 - MPMX19_00035 0.33 +0.8
39,953 + MPMX19_00035 0.43 +0.7
39,988 + MPMX19_00035 0.51 -0.5
39,988 + MPMX19_00035 0.51 -1.1
39,988 + MPMX19_00035 0.51 +2.3
39,988 + MPMX19_00035 0.51 +0.7
39,988 + MPMX19_00035 0.51 -0.7
39,988 + MPMX19_00035 0.51 +0.9
39,988 + MPMX19_00035 0.51 -1.0
39,989 - MPMX19_00035 0.51 -0.8
39,989 - MPMX19_00035 0.51 +0.6
39,989 - MPMX19_00035 0.51 -1.6
39,989 - MPMX19_00035 0.51 +0.1
39,989 - MPMX19_00035 0.51 -0.9
39,989 - MPMX19_00035 0.51 +0.2
39,989 - MPMX19_00035 0.51 +0.5
39,989 - MPMX19_00035 0.51 -0.5
39,989 - MPMX19_00035 0.51 +1.2
39,989 - MPMX19_00035 0.51 -0.8
39,989 - MPMX19_00035 0.51 -1.1
39,989 - MPMX19_00035 0.51 -0.2
39,989 - MPMX19_00035 0.51 +0.2
40,015 + MPMX19_00035 0.56 +0.5
40,015 + MPMX19_00035 0.56 +1.5
40,015 + MPMX19_00035 0.56 -1.4
40,015 + MPMX19_00035 0.56 +0.6
40,015 + MPMX19_00035 0.56 -2.0
40,015 + MPMX19_00035 0.56 -2.9
40,016 - MPMX19_00035 0.57 +1.0
40,016 - MPMX19_00035 0.57 +0.6
40,016 - MPMX19_00035 0.57 +0.0
40,016 - MPMX19_00035 0.57 -0.5
40,016 - MPMX19_00035 0.57 -1.0
40,198 + +0.3
40,198 + -0.7
40,199 - -0.1
40,266 + -0.9
40,266 + -0.4
40,267 - -1.1
40,267 - -1.3
40,324 + MPMX19_00036 0.17 -0.8
40,325 - MPMX19_00036 0.17 -1.5
40,325 - MPMX19_00036 0.17 +0.4
40,325 - MPMX19_00036 0.17 +0.9
40,325 - MPMX19_00036 0.17 -1.0
40,325 - MPMX19_00036 0.17 -2.7
40,325 - MPMX19_00036 0.17 -1.0
40,325 - MPMX19_00036 0.17 +0.5
40,325 - MPMX19_00036 0.17 -0.6
40,325 - MPMX19_00036 0.17 +0.3
40,325 - MPMX19_00036 0.17 -0.8
40,325 - MPMX19_00036 0.17 -0.6
40,438 + MPMX19_00036 0.37 -0.1
40,438 + MPMX19_00036 0.37 -0.6
40,439 - MPMX19_00036 0.37 -0.8

Or see this region's nucleotide sequence