Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00018

Experiment: NL-CCM, start OD=0.3

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	NL-CCM, start OD=0.3
22,938	+		MPMX19_00017	0.46	-0.4
22,938	+		MPMX19_00017	0.46	+0.2
22,938	+		MPMX19_00017	0.46	+0.0
22,938	+		MPMX19_00017	0.46	+0.4
22,938	+		MPMX19_00017	0.46	-0.9
22,938	+		MPMX19_00017	0.46	-2.1
22,938	+		MPMX19_00017	0.46	-0.6
22,938	+		MPMX19_00017	0.46	-0.5
22,938	+		MPMX19_00017	0.46	+0.1
22,938	+		MPMX19_00017	0.46	-1.5
22,939	-		MPMX19_00017	0.46	-0.3
22,939	-		MPMX19_00017	0.46	+0.1
22,939	-		MPMX19_00017	0.46	-0.7
22,939	-		MPMX19_00017	0.46	-0.6
22,939	-		MPMX19_00017	0.46	+0.9
22,939	-		MPMX19_00017	0.46	-0.5
22,939	-		MPMX19_00017	0.46	-0.5
22,939	-		MPMX19_00017	0.46	+0.4
22,939	-		MPMX19_00017	0.46	+0.9
23,001	+		MPMX19_00017	0.49	-0.3
23,001	+		MPMX19_00017	0.49	-1.3
23,001	+		MPMX19_00017	0.49	+0.3
23,001	+		MPMX19_00017	0.49	-0.6
23,001	+		MPMX19_00017	0.49	-1.3
23,001	+		MPMX19_00017	0.49	-0.0
23,001	+		MPMX19_00017	0.49	-1.1
23,001	+		MPMX19_00017	0.49	-1.1
23,001	+		MPMX19_00017	0.49	-1.9
23,001	+		MPMX19_00017	0.49	-0.2
23,001	+		MPMX19_00017	0.49	-1.3
23,001	+		MPMX19_00017	0.49	+0.5
23,001	+		MPMX19_00017	0.49	-0.1
23,001	+		MPMX19_00017	0.49	-0.7
23,001	+		MPMX19_00017	0.49	+1.6
23,001	+		MPMX19_00017	0.49	-0.1
23,001	+		MPMX19_00017	0.49	-0.3
23,001	+		MPMX19_00017	0.49	-0.3
23,002	-		MPMX19_00017	0.49	-0.5
23,002	-		MPMX19_00017	0.49	-0.8
23,002	-		MPMX19_00017	0.49	+0.6
23,002	-		MPMX19_00017	0.49	-0.4
23,002	-		MPMX19_00017	0.49	-0.1
23,002	-		MPMX19_00017	0.49	+0.5
23,002	-		MPMX19_00017	0.49	-1.3
23,002	-		MPMX19_00017	0.49	-1.6
23,002	-		MPMX19_00017	0.49	-0.1
23,002	-		MPMX19_00017	0.49	-1.1
23,175	+		MPMX19_00017	0.60	+0.0
23,176	-		MPMX19_00017	0.60	-0.5
23,176	-		MPMX19_00017	0.60	-0.6
23,282	+		MPMX19_00017	0.66	-0.6
23,282	+		MPMX19_00017	0.66	-0.7
23,282	+		MPMX19_00017	0.66	+0.9
23,283	-		MPMX19_00017	0.66	-0.1
23,382	+		MPMX19_00017	0.72	-0.9
23,382	+		MPMX19_00017	0.72	-0.7
23,382	+		MPMX19_00017	0.72	+0.3
23,382	+		MPMX19_00017	0.72	+0.2
23,383	-		MPMX19_00017	0.72	-0.2
23,383	-		MPMX19_00017	0.72	-0.8
23,484	+		MPMX19_00017	0.78	+1.2
23,673	+		MPMX19_00017	0.90	+0.4
23,673	+		MPMX19_00017	0.90	-0.7
23,673	+		MPMX19_00017	0.90	+0.6
23,673	+		MPMX19_00017	0.90	-1.6
23,673	+		MPMX19_00017	0.90	-1.2
23,673	+		MPMX19_00017	0.90	-0.3
23,673	+		MPMX19_00017	0.90	-2.2
23,673	+		MPMX19_00017	0.90	-1.6
23,673	+		MPMX19_00017	0.90	+0.5
23,673	+		MPMX19_00017	0.90	-0.3
23,673	+		MPMX19_00017	0.90	-0.2
23,673	+		MPMX19_00017	0.90	+0.9
23,673	+		MPMX19_00017	0.90	-1.0
23,673	+		MPMX19_00017	0.90	+0.0
23,673	+		MPMX19_00017	0.90	-0.8
23,673	+		MPMX19_00017	0.90	-0.4
23,673	+		MPMX19_00017	0.90	-2.0
23,673	+		MPMX19_00017	0.90	-1.4
23,673	+		MPMX19_00017	0.90	+0.5
23,673	+		MPMX19_00017	0.90	+1.5
23,673	+		MPMX19_00017	0.90	-1.1
23,673	+		MPMX19_00017	0.90	+0.7
23,673	+		MPMX19_00017	0.90	+0.0
23,673	+		MPMX19_00017	0.90	+1.2
23,674	-		MPMX19_00017	0.90	+1.2
23,674	-		MPMX19_00017	0.90	-0.1
23,674	-		MPMX19_00017	0.90	-1.1
23,674	-		MPMX19_00017	0.90	+0.6
23,674	-		MPMX19_00017	0.90	+0.8
23,674	-		MPMX19_00017	0.90	-0.2
23,674	-		MPMX19_00017	0.90	-0.8
23,674	-		MPMX19_00017	0.90	-0.0
23,674	-		MPMX19_00017	0.90	+0.5
23,674	-		MPMX19_00017	0.90	+0.6
23,674	-		MPMX19_00017	0.90	-1.1
23,781	+				-1.0
23,781	+				-2.1
23,838	+				-1.4
23,838	+				-0.9
23,838	+				-0.5
23,838	+				-1.4
23,838	+				-0.1
23,839	-				-0.4
23,839	-				-0.3
23,925	+				+0.7
23,925	+				-0.4
23,926	-				-1.5
23,926	-				-0.1
23,926	-				-1.1
23,926	-				-0.5
23,926	-				-0.7
23,926	-				-0.1
23,946	+				-1.1
23,946	+				-1.0
23,946	+				-1.1
23,946	+				+0.4
23,946	+				-1.0
23,947	-				-1.3
23,947	-				-1.3
23,947	-				-0.6
23,947	-				-0.8
23,947	-				-0.8
23,947	-				+0.3
23,982	+		MPMX19_00018	0.10	+1.9
23,982	+		MPMX19_00018	0.10	-1.9
23,982	+		MPMX19_00018	0.10	+0.2
23,982	+		MPMX19_00018	0.10	-1.8
23,982	+		MPMX19_00018	0.10	-0.6
23,982	+		MPMX19_00018	0.10	+0.2
23,982	+		MPMX19_00018	0.10	-0.4
23,982	+		MPMX19_00018	0.10	-0.1
23,983	-		MPMX19_00018	0.10	-0.3
24,261	+		MPMX19_00018	0.32	+1.2
24,261	+		MPMX19_00018	0.32	-1.0
24,261	+		MPMX19_00018	0.32	-0.6
24,261	+		MPMX19_00018	0.32	-0.5
24,261	+		MPMX19_00018	0.32	-1.2
24,261	+		MPMX19_00018	0.32	-1.4
24,261	+		MPMX19_00018	0.32	-0.1
24,261	+		MPMX19_00018	0.32	+1.3
24,261	+		MPMX19_00018	0.32	-0.0
24,262	-		MPMX19_00018	0.32	-2.2
24,262	-		MPMX19_00018	0.32	-0.1
24,262	-		MPMX19_00018	0.32	-0.6
24,262	-		MPMX19_00018	0.32	-0.8
24,262	-		MPMX19_00018	0.32	-0.1
24,262	-		MPMX19_00018	0.32	-1.4
24,262	-		MPMX19_00018	0.32	-0.6
24,262	-		MPMX19_00018	0.32	+0.2
24,262	-		MPMX19_00018	0.32	-0.4
24,262	-		MPMX19_00018	0.32	-0.1
24,262	-		MPMX19_00018	0.32	-0.2
24,262	-		MPMX19_00018	0.32	-0.8
24,336	+		MPMX19_00018	0.37	-0.1
24,336	+		MPMX19_00018	0.37	-1.4
24,336	+		MPMX19_00018	0.37	-1.3
24,337	-		MPMX19_00018	0.37	-1.1
24,337	-		MPMX19_00018	0.37	-1.4
24,337	-		MPMX19_00018	0.37	+0.4
24,483	+		MPMX19_00018	0.48	-0.8
24,484	-		MPMX19_00018	0.48	+0.2
24,504	+		MPMX19_00018	0.50	-2.2
24,504	+		MPMX19_00018	0.50	-0.3
24,504	+		MPMX19_00018	0.50	-2.8
24,504	+		MPMX19_00018	0.50	-1.1
24,504	+		MPMX19_00018	0.50	-1.5
24,505	-		MPMX19_00018	0.50	-0.4
24,505	-		MPMX19_00018	0.50	-0.5
24,648	+		MPMX19_00018	0.61	-0.2
24,648	+		MPMX19_00018	0.61	-0.2
24,649	-		MPMX19_00018	0.61	-1.4
24,649	-		MPMX19_00018	0.61	-1.3
24,730	+		MPMX19_00018	0.67	+0.6
25,002	+		MPMX19_00018	0.88	+0.1
25,002	+		MPMX19_00018	0.88	-0.4
25,003	-		MPMX19_00018	0.88	-1.6
25,130	+				-0.8
25,130	+				-0.8
25,130	+				-1.5
25,130	+				-0.2
25,130	+				-1.5
25,130	+				-0.5
25,130	+				-1.5
25,130	+				-1.3
25,130	+				-0.0
25,130	+				-0.4
25,131	-				-0.2
25,131	-				-0.5
25,131	-				-0.1
25,131	-				-0.5
25,131	-				+1.2
25,131	-				+1.2
25,131	-				+0.3
25,131	-				+0.6
25,131	-				+0.0
25,131	-				+0.2
25,131	-				+1.1
25,158	+				-0.4
25,214	+				+1.2
25,214	+				-1.2
25,214	+				-0.2
25,214	+				-0.9
25,214	+				+0.0
25,215	-				-1.4
25,215	-				+0.2
25,215	-				+0.5
25,215	-				-0.1
25,215	-				+1.2
25,259	-				+0.2
25,350	-		MPMX19_00019	0.31	+1.0
25,597	+				+1.2
25,597	+				+1.0
25,598	-				-2.4
25,598	-				-1.3
25,682	+		MPMX19_00020	0.61	-1.1
25,683	-		MPMX19_00020	0.62	+0.2
25,683	-		MPMX19_00020	0.62	+1.6
25,683	-		MPMX19_00020	0.62	-0.1
25,802	+				-1.5
25,803	-				+0.9
25,858	+				+1.2
25,858	+				+0.5
25,858	+				+1.2
25,858	+				+0.2
25,858	+				-0.4
25,858	+				-0.3
25,858	+				-1.3
25,858	+				-1.0
25,858	+				-0.7
25,858	+				-1.0
25,858	+				+0.4
25,858	+				-0.3
25,858	+				-0.6
25,858	+				+1.1
25,859	-				-0.3
25,859	-				-0.1
25,859	-				-0.1
25,859	-				+0.6
25,859	-				-1.1
25,859	-				+0.9
25,859	-				-1.5
25,859	-				-2.3
25,859	-				+0.8
25,859	-				-0.6
25,859	-				+1.6
25,859	-				-0.2
25,859	-				-0.2
25,859	-				-1.0
26,049	-		MPMX19_00021	0.31	+1.0
26,049	-		MPMX19_00021	0.31	-1.5
26,049	-		MPMX19_00021	0.31	-1.0
26,049	-		MPMX19_00021	0.31	+0.1
26,052	-		MPMX19_00021	0.31	-0.7
26,052	-		MPMX19_00021	0.31	-0.9
26,052	-		MPMX19_00021	0.31	-0.6
26,052	-		MPMX19_00021	0.31	-1.3