Strain Fitness in Azospirillum sp. SherDot2

Strain Fitness in Azospirillum sp. SherDot2 around MPMX19_00008

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG

download strain data

Per-strain Table

Position	Strand	LocusTag	Fraction	NL-CCM, start OD=0.3
				remove
8,890	+	MPMX19_00007	0.73	+1.2
8,890	+	MPMX19_00007	0.73	+1.2
8,890	+	MPMX19_00007	0.73	+0.0
8,890	+	MPMX19_00007	0.73	-0.1
8,890	+	MPMX19_00007	0.73	-0.7
8,911	+	MPMX19_00007	0.74	-1.1
8,911	+	MPMX19_00007	0.74	+1.2
8,911	+	MPMX19_00007	0.74	-1.5
8,911	+	MPMX19_00007	0.74	-1.2
8,911	+	MPMX19_00007	0.74	-0.9
8,911	+	MPMX19_00007	0.74	-0.1
8,911	+	MPMX19_00007	0.74	+1.6
8,911	+	MPMX19_00007	0.74	-1.4
8,912	-	MPMX19_00007	0.74	+1.3
8,912	-	MPMX19_00007	0.74	-0.1
8,912	-	MPMX19_00007	0.74	+0.6
8,912	-	MPMX19_00007	0.74	+0.4
8,912	-	MPMX19_00007	0.74	+0.0
8,912	-	MPMX19_00007	0.74	-0.7
9,007	+	MPMX19_00007	0.78	+0.3
9,007	+	MPMX19_00007	0.78	-1.4
9,007	+	MPMX19_00007	0.78	-0.2
9,007	+	MPMX19_00007	0.78	-1.4
9,007	+	MPMX19_00007	0.78	+0.6
9,007	+	MPMX19_00007	0.78	-0.3
9,007	+	MPMX19_00007	0.78	-0.7
9,007	+	MPMX19_00007	0.78	-0.1
9,007	+	MPMX19_00007	0.78	+1.2
9,007	+	MPMX19_00007	0.78	+0.4
9,007	+	MPMX19_00007	0.78	+0.8
9,007	+	MPMX19_00007	0.78	+1.0
9,007	+	MPMX19_00007	0.78	+0.3
9,007	+	MPMX19_00007	0.78	-0.0
9,007	+	MPMX19_00007	0.78	-0.6
9,007	+	MPMX19_00007	0.78	-0.4
9,007	+	MPMX19_00007	0.78	+1.0
9,008	-	MPMX19_00007	0.78	-0.7
9,008	-	MPMX19_00007	0.78	+1.2
9,008	-	MPMX19_00007	0.78	+0.2
9,008	-	MPMX19_00007	0.78	-0.1
9,008	-	MPMX19_00007	0.78	+0.5
9,008	-	MPMX19_00007	0.78	-0.7
9,008	-	MPMX19_00007	0.78	+0.0
9,008	-	MPMX19_00007	0.78	+0.1
9,008	-	MPMX19_00007	0.78	+0.1
9,008	-	MPMX19_00007	0.78	-0.4
9,008	-	MPMX19_00007	0.78	-0.8
9,079	+	MPMX19_00007	0.81	-0.1
9,079	+	MPMX19_00007	0.81	-0.5
9,079	+	MPMX19_00007	0.81	-1.4
9,079	+	MPMX19_00007	0.81	-0.1
9,079	+	MPMX19_00007	0.81	-1.1
9,079	+	MPMX19_00007	0.81	-0.1
9,079	+	MPMX19_00007	0.81	+0.8
9,079	+	MPMX19_00007	0.81	+1.4
9,079	+	MPMX19_00007	0.81	-0.8
9,079	+	MPMX19_00007	0.81	-0.6
9,079	+	MPMX19_00007	0.81	+0.5
9,079	+	MPMX19_00007	0.81	-0.9
9,079	+	MPMX19_00007	0.81	-1.0
9,079	+	MPMX19_00007	0.81	+0.4
9,079	+	MPMX19_00007	0.81	-1.5
9,079	+	MPMX19_00007	0.81	-0.8
9,080	-	MPMX19_00007	0.81	-0.6
9,080	-	MPMX19_00007	0.81	-0.6
9,080	-	MPMX19_00007	0.81	-1.1
9,080	-	MPMX19_00007	0.81	-1.6
9,080	-	MPMX19_00007	0.81	-1.5
9,080	-	MPMX19_00007	0.81	-0.3
9,080	-	MPMX19_00007	0.81	-1.1
9,080	-	MPMX19_00007	0.81	+0.2
9,080	-	MPMX19_00007	0.81	-0.1
9,080	-	MPMX19_00007	0.81	-0.5
9,080	-	MPMX19_00007	0.81	-2.5
9,080	-	MPMX19_00007	0.81	-0.1
9,080	-	MPMX19_00007	0.81	-1.1
9,080	-	MPMX19_00007	0.81	-0.7
9,080	-	MPMX19_00007	0.81	-0.0
9,080	-	MPMX19_00007	0.81	-1.0
9,316	+	MPMX19_00007	0.90	-0.1
9,316	+	MPMX19_00007	0.90	-0.4
9,316	+	MPMX19_00007	0.90	-0.1
9,316	+	MPMX19_00007	0.90	+0.2
9,316	+	MPMX19_00007	0.90	-0.3
9,317	-			-0.2
9,317	-			-1.4
9,317	-			-0.0
9,317	-			-1.0
9,317	-			+1.2
9,317	-			+1.9
9,317	-			-0.5
9,400	+			-0.4
9,400	+			-0.7
9,400	+			+0.4
9,400	+			-0.5
9,400	+			-0.4
9,400	+			-1.6
9,400	+			+0.5
9,400	+			+1.2
9,400	+			-1.0
9,400	+			+0.0
9,400	+			+0.6
9,400	+			-1.0
9,400	+			-0.1
9,401	-			-1.4
9,401	-			+0.8
9,401	-			-0.4
9,401	-			-0.1
9,401	-			-0.2
9,401	-			-1.0
9,401	-			+1.0
9,401	-			-1.2
9,401	-			-1.8
9,401	-			-0.9
9,401	-			-2.0
9,401	-			+2.5
9,401	-			+0.1
9,401	-			+0.8
9,401	-			-0.6
9,478	+			-0.8
9,478	+			-0.3
9,478	+			+1.2
9,478	+			+0.3
9,478	+			+0.6
9,478	+			-1.1
9,478	+			-0.6
9,478	+			-0.2
9,478	+			-0.7
9,478	+			+1.2
9,478	+			+1.1
9,478	+			-0.2
9,478	+			+0.2
9,478	+			-2.1
9,478	+			+0.1
9,478	+			+0.3
9,479	-			-1.0
9,479	-			-0.4
9,479	-			-0.6
9,479	-			-0.5
9,479	-			-1.1
9,479	-			+1.0
9,479	-			+0.4
9,479	-			-0.3
9,479	-			+0.7
9,479	-			+0.0
9,479	-			-1.3
9,479	-			-1.6
9,479	-			+0.7
9,479	-			-0.8
9,479	-			+0.3
9,479	-			-1.7
9,575	+			-0.1
9,575	+			+0.6
9,576	-			+0.9
9,624	+			+0.6
9,624	+			-0.6
9,624	+			-0.4
9,624	+			-0.7
9,624	+			-0.5
9,624	+			-1.9
9,624	+			-0.6
9,624	+			+0.0
9,624	+			+0.2
9,624	+			-2.1
9,624	+			-1.8
9,624	+			-1.1
9,624	+			-1.9
9,624	+			+0.6
9,624	+			-0.3
9,624	+			-0.3
9,624	+			+0.5
9,624	+			-0.4
9,624	+			-2.9
9,624	+			-1.3
9,624	+			-0.6
9,625	-			-0.5
9,625	-			-1.8
9,625	-			+1.1
9,625	-			-1.4
9,625	-			+1.2
9,625	-			+0.6
9,625	-			+0.2
9,625	-			-0.5
9,625	-			-0.6
9,625	-			+0.2
9,625	-			-0.4
9,625	-			+0.4
9,625	-			+0.4
9,625	-			-0.8
9,625	-			-0.8
9,625	-			-1.1
9,625	-			-0.4
9,625	-			-0.8
9,625	-			-2.0
9,625	-			-0.8
9,625	-			-2.0
9,625	-			-0.8
9,625	-			-2.0
9,669	+			-1.3
9,744	+	MPMX19_00008	0.56	-1.1
9,744	+	MPMX19_00008	0.56	+1.9
9,744	+	MPMX19_00008	0.56	+0.6
9,745	-	MPMX19_00008	0.57	-0.6
9,745	-	MPMX19_00008	0.57	-1.6
9,755	+	MPMX19_00008	0.64	-1.0
9,755	+	MPMX19_00008	0.64	-2.4
9,756	-	MPMX19_00008	0.65	-1.3
9,756	-	MPMX19_00008	0.65	-1.7
9,756	-	MPMX19_00008	0.65	-0.6
9,939	+			+0.1
9,939	+			+0.8
9,939	+			-1.0
9,939	+			-1.2
9,939	+			+1.4
9,939	+			+0.6
9,939	+			+0.8
9,939	+			-0.4
9,939	+			+3.2
9,939	+			+1.2
9,939	+			-0.1
9,939	+			-0.6
9,939	+			-0.2
9,939	+			-2.3
9,940	-			-0.2
9,940	-			-0.3
9,940	-			-0.2
9,940	-			-0.8
9,940	-			-2.0
9,940	-			-0.0
9,940	-			-2.1
9,940	-			+0.1
9,940	-			-0.2
10,059	+	MPMX19_00009	0.20	-1.6
10,059	+	MPMX19_00009	0.20	-0.3
10,059	+	MPMX19_00009	0.20	+0.7
10,059	+	MPMX19_00009	0.20	-1.6
10,059	+	MPMX19_00009	0.20	-2.5
10,059	+	MPMX19_00009	0.20	-0.5
10,059	+	MPMX19_00009	0.20	-0.7
10,059	+	MPMX19_00009	0.20	-1.0
10,059	+	MPMX19_00009	0.20	-0.5
10,059	+	MPMX19_00009	0.20	-0.7
10,059	+	MPMX19_00009	0.20	+1.5
10,059	+	MPMX19_00009	0.20	-1.3
10,059	+	MPMX19_00009	0.20	-1.4
10,059	+	MPMX19_00009	0.20	-1.0
10,059	+	MPMX19_00009	0.20	+0.2
10,060	-	MPMX19_00009	0.20	-0.7
10,060	-	MPMX19_00009	0.20	-0.1
10,060	-	MPMX19_00009	0.20	-0.8
10,060	-	MPMX19_00009	0.20	-0.9
10,060	-	MPMX19_00009	0.20	-1.1
10,060	-	MPMX19_00009	0.20	-0.1
10,060	-	MPMX19_00009	0.20	-0.6
10,060	-	MPMX19_00009	0.20	+0.2
10,060	-	MPMX19_00009	0.20	+0.0
10,060	-	MPMX19_00009	0.20	-1.6
10,060	-	MPMX19_00009	0.20	-0.0
10,139	+	MPMX19_00009	0.33	-0.5
10,139	+	MPMX19_00009	0.33	-0.2
10,139	+	MPMX19_00009	0.33	-0.6
10,139	+	MPMX19_00009	0.33	-0.7
10,139	+	MPMX19_00009	0.33	-0.5
10,139	+	MPMX19_00009	0.33	-0.5
10,140	-	MPMX19_00009	0.33	+1.0
10,140	-	MPMX19_00009	0.33	-0.3
10,140	-	MPMX19_00009	0.33	-0.3
10,140	-	MPMX19_00009	0.33	+0.0
10,140	-	MPMX19_00009	0.33	-0.4
10,361	+	MPMX19_00009	0.70	-0.4
10,361	+	MPMX19_00009	0.70	+0.6
10,361	+	MPMX19_00009	0.70	-1.5
10,361	+	MPMX19_00009	0.70	-0.8
10,362	-	MPMX19_00009	0.71	-0.1
10,362	-	MPMX19_00009	0.71	+0.6
10,362	-	MPMX19_00009	0.71	-1.0
10,362	-	MPMX19_00009	0.71	+0.3
10,568	+			+0.4
10,568	+			-0.6
10,568	+			-0.9
10,568	+			-0.2
10,568	+			-0.1
10,569	-			+1.0
10,569	-			+0.4
10,569	-			+0.1
10,569	-			+0.3
10,569	-			-0.8
10,569	-			-0.5
10,590	+			+0.1
10,590	+			-0.7
10,590	+			+1.2
10,590	+			+1.4
10,590	+			+0.0
10,590	+			+1.0
10,590	+			-0.4
10,590	+			+1.0
10,590	+			-2.3
10,590	+			+1.2
10,590	+			+0.6
10,591	-			+0.3
10,591	-			+0.0
10,591	-			-1.3
10,591	-			-0.3
10,591	-			-1.3
10,591	-			-0.3
10,591	-			-0.5
10,591	-			-1.0
10,591	-			-0.2
10,591	-			-0.6
10,591	-			+0.3
10,591	-			+0.6
10,591	-			-0.3
10,591	-			-0.6
10,591	-			+1.2
10,591	-			+1.2
10,693	-			-1.0
10,702	+			+0.3
10,702	+			+0.2
10,702	+			-0.7
10,702	+			-0.1
10,702	+			-0.6
10,703	-			-1.1
10,703	-			-1.5
10,731	+			-1.0
10,731	+			-0.1
10,731	+			+0.1
10,731	+			+0.0
10,731	+			+1.4
10,732	-			+0.3
10,732	-			-0.5
10,732	-			-0.6
10,732	-			-1.8

Or see this region's nucleotide sequence