Strain Fitness in Pseudomonas sp. DMC3 around GFF657

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF656 and GFF657 are separated by 74 nucleotidesGFF657 and GFF658 are separated by 12 nucleotides GFF656 - hypothetical protein, at 727,370 to 728,428 GFF656 GFF657 - Gluconate 2-dehydrogenase cytochrome c subunit, at 728,503 to 729,804 GFF657 GFF658 - Gluconate 2-dehydrogenase flavoprotein, at 729,817 to 731,601 GFF658 Position (kb) 728 729 730Strain fitness (log2 ratio) -2 -1 0 1 2at 727.536 kb on + strand, within GFF656at 727.536 kb on + strand, within GFF656at 727.536 kb on + strand, within GFF656at 727.536 kb on + strand, within GFF656at 727.537 kb on - strand, within GFF656at 727.659 kb on + strand, within GFF656at 727.659 kb on + strand, within GFF656at 727.659 kb on + strand, within GFF656at 727.659 kb on + strand, within GFF656at 727.968 kb on + strand, within GFF656at 728.007 kb on + strand, within GFF656at 728.187 kb on + strand, within GFF656at 728.187 kb on + strand, within GFF656at 728.187 kb on + strand, within GFF656at 728.187 kb on + strand, within GFF656at 728.187 kb on + strand, within GFF656at 728.188 kb on - strand, within GFF656at 728.188 kb on - strand, within GFF656at 728.188 kb on - strand, within GFF656at 728.188 kb on - strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.193 kb on + strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.194 kb on - strand, within GFF656at 728.220 kb on + strand, within GFF656at 728.422 kb on + strandat 728.422 kb on + strandat 728.422 kb on + strandat 728.423 kb on - strandat 728.423 kb on - strandat 728.483 kb on + strandat 728.483 kb on + strandat 728.483 kb on + strandat 728.553 kb on + strandat 728.553 kb on + strandat 728.553 kb on + strandat 728.562 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.566 kb on + strandat 728.567 kb on - strandat 728.567 kb on - strandat 728.810 kb on + strand, within GFF657at 728.810 kb on + strand, within GFF657at 728.811 kb on - strand, within GFF657at 728.811 kb on - strand, within GFF657at 728.811 kb on - strand, within GFF657at 728.855 kb on + strand, within GFF657at 728.855 kb on + strand, within GFF657at 728.856 kb on - strand, within GFF657at 728.856 kb on - strand, within GFF657at 728.856 kb on - strand, within GFF657at 728.856 kb on - strand, within GFF657at 728.856 kb on - strand, within GFF657at 728.918 kb on + strand, within GFF657at 728.919 kb on - strand, within GFF657at 728.966 kb on + strand, within GFF657at 728.967 kb on - strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.002 kb on + strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.003 kb on - strand, within GFF657at 729.043 kb on + strand, within GFF657at 729.275 kb on + strand, within GFF657at 729.275 kb on + strand, within GFF657at 729.275 kb on + strand, within GFF657at 729.275 kb on + strand, within GFF657at 729.276 kb on - strand, within GFF657at 729.318 kb on - strand, within GFF657at 729.440 kb on + strand, within GFF657at 729.440 kb on + strand, within GFF657at 729.440 kb on + strand, within GFF657at 729.441 kb on - strand, within GFF657at 729.446 kb on + strand, within GFF657at 729.446 kb on + strand, within GFF657at 729.446 kb on + strand, within GFF657at 729.446 kb on + strand, within GFF657at 729.447 kb on - strand, within GFF657at 729.447 kb on - strand, within GFF657at 729.447 kb on - strand, within GFF657at 729.482 kb on + strand, within GFF657at 729.483 kb on - strand, within GFF657at 729.492 kb on - strand, within GFF657at 729.506 kb on + strand, within GFF657at 729.506 kb on + strand, within GFF657at 729.507 kb on - strand, within GFF657at 729.569 kb on + strand, within GFF657at 729.570 kb on - strand, within GFF657at 729.710 kb on + strandat 729.710 kb on + strandat 729.711 kb on - strandat 729.711 kb on - strandat 729.711 kb on - strandat 729.711 kb on - strandat 729.753 kb on - strandat 729.818 kb on + strandat 729.818 kb on + strandat 729.819 kb on - strandat 729.819 kb on - strandat 729.852 kb on - strandat 729.852 kb on - strandat 729.852 kb on - strandat 729.882 kb on - strandat 729.914 kb on + strandat 729.914 kb on + strandat 730.053 kb on - strand, within GFF658at 730.053 kb on - strand, within GFF658at 730.247 kb on + strand, within GFF658at 730.248 kb on - strand, within GFF658at 730.248 kb on - strand, within GFF658at 730.259 kb on + strand, within GFF658at 730.304 kb on + strand, within GFF658at 730.304 kb on + strand, within GFF658at 730.304 kb on + strand, within GFF658at 730.305 kb on - strand, within GFF658at 730.305 kb on - strand, within GFF658at 730.307 kb on + strand, within GFF658at 730.307 kb on + strand, within GFF658at 730.307 kb on + strand, within GFF658at 730.307 kb on + strand, within GFF658at 730.308 kb on - strand, within GFF658at 730.308 kb on - strand, within GFF658at 730.308 kb on - strand, within GFF658at 730.601 kb on + strand, within GFF658at 730.712 kb on + strand, within GFF658at 730.712 kb on + strand, within GFF658at 730.712 kb on + strand, within GFF658at 730.712 kb on + strand, within GFF658at 730.713 kb on - strand, within GFF658at 730.713 kb on - strand, within GFF658at 730.713 kb on - strand, within GFF658at 730.737 kb on + strand, within GFF658at 730.737 kb on + strand, within GFF658at 730.738 kb on - strand, within GFF658at 730.738 kb on - strand, within GFF658at 730.738 kb on - strand, within GFF658

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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727,536 + GFF656 0.16 -0.6
727,536 + GFF656 0.16 -1.4
727,536 + GFF656 0.16 +0.2
727,536 + GFF656 0.16 -0.6
727,537 - GFF656 0.16 -0.3
727,659 + GFF656 0.27 +0.1
727,659 + GFF656 0.27 -0.6
727,659 + GFF656 0.27 -0.8
727,659 + GFF656 0.27 -0.2
727,968 + GFF656 0.56 -0.2
728,007 + GFF656 0.60 -2.1
728,187 + GFF656 0.77 +0.0
728,187 + GFF656 0.77 -1.3
728,187 + GFF656 0.77 -0.9
728,187 + GFF656 0.77 +0.8
728,187 + GFF656 0.77 +1.1
728,188 - GFF656 0.77 +1.3
728,188 - GFF656 0.77 -0.9
728,188 - GFF656 0.77 -0.6
728,188 - GFF656 0.77 +0.7
728,193 + GFF656 0.78 +0.6
728,193 + GFF656 0.78 +0.3
728,193 + GFF656 0.78 +0.2
728,193 + GFF656 0.78 +1.3
728,193 + GFF656 0.78 +0.5
728,193 + GFF656 0.78 -0.0
728,193 + GFF656 0.78 -0.6
728,193 + GFF656 0.78 -1.1
728,193 + GFF656 0.78 -0.3
728,193 + GFF656 0.78 -0.3
728,193 + GFF656 0.78 +0.1
728,194 - GFF656 0.78 +0.9
728,194 - GFF656 0.78 -0.8
728,194 - GFF656 0.78 -0.6
728,194 - GFF656 0.78 +0.3
728,194 - GFF656 0.78 -0.5
728,194 - GFF656 0.78 +0.5
728,194 - GFF656 0.78 -0.5
728,194 - GFF656 0.78 -0.2
728,194 - GFF656 0.78 -0.8
728,194 - GFF656 0.78 +0.7
728,194 - GFF656 0.78 -0.3
728,194 - GFF656 0.78 +0.4
728,194 - GFF656 0.78 +0.6
728,194 - GFF656 0.78 +0.1
728,220 + GFF656 0.80 -0.3
728,422 + -2.4
728,422 + -0.3
728,422 + -0.4
728,423 - -0.4
728,423 - -0.1
728,483 + -0.9
728,483 + -1.1
728,483 + -0.2
728,553 + +0.5
728,553 + -1.2
728,553 + -0.9
728,562 + -0.5
728,566 + -0.3
728,566 + -0.4
728,566 + -0.4
728,566 + -2.2
728,567 - +0.6
728,567 - -1.0
728,810 + GFF657 0.24 -1.4
728,810 + GFF657 0.24 -0.2
728,811 - GFF657 0.24 +1.0
728,811 - GFF657 0.24 +0.7
728,811 - GFF657 0.24 +0.4
728,855 + GFF657 0.27 -0.3
728,855 + GFF657 0.27 +1.1
728,856 - GFF657 0.27 +0.1
728,856 - GFF657 0.27 -1.1
728,856 - GFF657 0.27 +0.2
728,856 - GFF657 0.27 -0.2
728,856 - GFF657 0.27 +0.9
728,918 + GFF657 0.32 -0.6
728,919 - GFF657 0.32 +0.5
728,966 + GFF657 0.36 -1.3
728,967 - GFF657 0.36 +0.0
729,002 + GFF657 0.38 +0.5
729,002 + GFF657 0.38 -0.1
729,002 + GFF657 0.38 -0.2
729,002 + GFF657 0.38 -1.9
729,002 + GFF657 0.38 +0.8
729,002 + GFF657 0.38 -0.5
729,002 + GFF657 0.38 +0.2
729,002 + GFF657 0.38 -0.4
729,002 + GFF657 0.38 -0.4
729,002 + GFF657 0.38 -0.8
729,002 + GFF657 0.38 -0.0
729,002 + GFF657 0.38 -0.2
729,002 + GFF657 0.38 +0.2
729,003 - GFF657 0.38 -0.0
729,003 - GFF657 0.38 -1.5
729,003 - GFF657 0.38 +0.7
729,003 - GFF657 0.38 -2.2
729,003 - GFF657 0.38 +0.5
729,003 - GFF657 0.38 +0.1
729,003 - GFF657 0.38 +0.0
729,003 - GFF657 0.38 -0.7
729,003 - GFF657 0.38 -0.3
729,003 - GFF657 0.38 -1.1
729,043 + GFF657 0.41 +0.2
729,275 + GFF657 0.59 +0.1
729,275 + GFF657 0.59 +0.3
729,275 + GFF657 0.59 -0.0
729,275 + GFF657 0.59 +0.6
729,276 - GFF657 0.59 -0.9
729,318 - GFF657 0.63 +0.1
729,440 + GFF657 0.72 +1.0
729,440 + GFF657 0.72 +0.8
729,440 + GFF657 0.72 +1.5
729,441 - GFF657 0.72 +0.5
729,446 + GFF657 0.72 -0.2
729,446 + GFF657 0.72 -0.5
729,446 + GFF657 0.72 -1.1
729,446 + GFF657 0.72 +0.4
729,447 - GFF657 0.73 +0.6
729,447 - GFF657 0.73 +0.9
729,447 - GFF657 0.73 -0.2
729,482 + GFF657 0.75 -1.1
729,483 - GFF657 0.75 -0.7
729,492 - GFF657 0.76 -0.4
729,506 + GFF657 0.77 +0.1
729,506 + GFF657 0.77 +0.5
729,507 - GFF657 0.77 -0.3
729,569 + GFF657 0.82 -0.2
729,570 - GFF657 0.82 +0.2
729,710 + -0.1
729,710 + -0.5
729,711 - +0.0
729,711 - -0.9
729,711 - -0.9
729,711 - +0.4
729,753 - -0.8
729,818 + -0.3
729,818 + -0.2
729,819 - +0.7
729,819 - +0.2
729,852 - +0.1
729,852 - -0.7
729,852 - -0.4
729,882 - -0.3
729,914 + +1.4
729,914 + -0.5
730,053 - GFF658 0.13 -0.2
730,053 - GFF658 0.13 -0.2
730,247 + GFF658 0.24 -0.8
730,248 - GFF658 0.24 -1.2
730,248 - GFF658 0.24 +0.7
730,259 + GFF658 0.25 -0.0
730,304 + GFF658 0.27 +0.0
730,304 + GFF658 0.27 -0.9
730,304 + GFF658 0.27 -1.3
730,305 - GFF658 0.27 -0.1
730,305 - GFF658 0.27 +0.7
730,307 + GFF658 0.27 -0.9
730,307 + GFF658 0.27 +0.1
730,307 + GFF658 0.27 -0.6
730,307 + GFF658 0.27 +0.5
730,308 - GFF658 0.28 +0.2
730,308 - GFF658 0.28 -0.1
730,308 - GFF658 0.28 -0.0
730,601 + GFF658 0.44 -1.0
730,712 + GFF658 0.50 +0.5
730,712 + GFF658 0.50 +1.8
730,712 + GFF658 0.50 -0.1
730,712 + GFF658 0.50 -1.1
730,713 - GFF658 0.50 +0.3
730,713 - GFF658 0.50 -0.3
730,713 - GFF658 0.50 -1.0
730,737 + GFF658 0.52 +0.3
730,737 + GFF658 0.52 +1.1
730,738 - GFF658 0.52 +0.0
730,738 - GFF658 0.52 -0.5
730,738 - GFF658 0.52 -0.1

Or see this region's nucleotide sequence