Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2179 and GFF2180 overlap by 4 nucleotides GFF2180 and GFF2181 are separated by 25 nucleotides GFF2181 and GFF2182 are separated by 292 nucleotides GFF2182 and GFF2183 are separated by 0 nucleotides
GFF2179 - hypothetical protein, at 426,400 to 427,158
GFF2179
GFF2180 - hypothetical protein, at 427,155 to 428,042
GFF2180
GFF2181 - hypothetical protein, at 428,068 to 428,373
GFF2181
GFF2182 - High-affinity branched-chain amino acid transport ATP-binding protein LivF, at 428,666 to 429,367
GFF2182
GFF2183 - Lipopolysaccharide export system ATP-binding protein LptB, at 429,368 to 430,135
GFF2183
Position (kb) 428
429 Strain fitness (log2 ratio) -2
-1
0
1 at 427.238 kb on + strand at 427.239 kb on - strand at 427.272 kb on - strand, within GFF2180 at 427.426 kb on + strand, within GFF2180 at 427.452 kb on + strand, within GFF2180 at 427.452 kb on + strand, within GFF2180 at 427.452 kb on + strand, within GFF2180 at 427.453 kb on - strand, within GFF2180 at 427.453 kb on - strand, within GFF2180 at 427.453 kb on - strand, within GFF2180 at 427.465 kb on + strand, within GFF2180 at 427.466 kb on - strand, within GFF2180 at 427.466 kb on - strand, within GFF2180 at 427.472 kb on + strand, within GFF2180 at 427.472 kb on + strand, within GFF2180 at 427.473 kb on - strand, within GFF2180 at 427.509 kb on + strand, within GFF2180 at 427.564 kb on + strand, within GFF2180 at 427.564 kb on + strand, within GFF2180 at 427.565 kb on - strand, within GFF2180 at 427.565 kb on - strand, within GFF2180 at 427.565 kb on - strand, within GFF2180 at 427.565 kb on - strand, within GFF2180 at 427.888 kb on + strand, within GFF2180 at 427.889 kb on - strand, within GFF2180 at 428.177 kb on + strand, within GFF2181 at 428.177 kb on + strand, within GFF2181 at 428.178 kb on - strand, within GFF2181 at 428.178 kb on - strand, within GFF2181 at 428.206 kb on - strand, within GFF2181 at 428.361 kb on + strand at 428.433 kb on + strand at 428.433 kb on + strand at 428.433 kb on + strand at 428.457 kb on + strand at 428.458 kb on - strand at 428.551 kb on + strand at 428.679 kb on + strand at 428.680 kb on - strand at 428.757 kb on + strand, within GFF2182 at 428.758 kb on - strand, within GFF2182 at 428.758 kb on - strand, within GFF2182 at 429.189 kb on + strand, within GFF2182 at 429.189 kb on + strand, within GFF2182 at 429.190 kb on - strand, within GFF2182 at 429.190 kb on - strand, within GFF2182 at 429.336 kb on + strand at 429.337 kb on - strand at 429.337 kb on - strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.369 kb on + strand at 429.370 kb on - strand at 429.370 kb on - strand at 429.370 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 427,238 + -1.0 427,239 - -0.4 427,272 - GFF2180 0.13 -1.7 427,426 + GFF2180 0.31 -0.9 427,452 + GFF2180 0.33 +0.2 427,452 + GFF2180 0.33 -0.8 427,452 + GFF2180 0.33 +0.1 427,453 - GFF2180 0.34 -0.6 427,453 - GFF2180 0.34 -0.7 427,453 - GFF2180 0.34 -0.2 427,465 + GFF2180 0.35 -0.1 427,466 - GFF2180 0.35 +0.2 427,466 - GFF2180 0.35 +0.1 427,472 + GFF2180 0.36 -1.1 427,472 + GFF2180 0.36 +1.3 427,473 - GFF2180 0.36 -0.7 427,509 + GFF2180 0.40 +0.8 427,564 + GFF2180 0.46 +0.9 427,564 + GFF2180 0.46 +0.3 427,565 - GFF2180 0.46 +0.4 427,565 - GFF2180 0.46 -0.0 427,565 - GFF2180 0.46 -0.7 427,565 - GFF2180 0.46 -1.3 427,888 + GFF2180 0.83 -0.1 427,889 - GFF2180 0.83 -0.1 428,177 + GFF2181 0.36 +0.9 428,177 + GFF2181 0.36 -0.1 428,178 - GFF2181 0.36 -0.5 428,178 - GFF2181 0.36 -1.8 428,206 - GFF2181 0.45 +0.2 428,361 + -0.2 428,433 + -0.2 428,433 + -0.7 428,433 + +0.1 428,457 + +0.8 428,458 - +0.6 428,551 + +0.8 428,679 + -0.7 428,680 - -0.5 428,757 + GFF2182 0.13 +0.8 428,758 - GFF2182 0.13 +0.5 428,758 - GFF2182 0.13 +0.0 429,189 + GFF2182 0.75 +0.3 429,189 + GFF2182 0.75 +0.6 429,190 - GFF2182 0.75 +0.9 429,190 - GFF2182 0.75 -0.7 429,336 + +0.9 429,337 - +0.2 429,337 - -0.6 429,369 + -1.8 429,369 + -0.1 429,369 + -0.9 429,369 + +0.3 429,369 + -0.8 429,369 + +0.6 429,369 + -0.3 429,369 + +0.3 429,370 - +0.3 429,370 - +0.1 429,370 - -0.3
Or see this region's nucleotide sequence