Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1891 and GFF1892 overlap by 1 nucleotides GFF1892 and GFF1893 are separated by 1 nucleotides GFF1893 and GFF1894 overlap by 4 nucleotides GFF1894 and GFF1895 are separated by 212 nucleotides
GFF1891 - hypothetical protein, at 106,677 to 108,260
GFF1891
GFF1892 - hypothetical protein, at 108,260 to 108,586
GFF1892
GFF1893 - putative RNA polymerase sigma factor FecI, at 108,588 to 109,154
GFF1893
GFF1894 - hypothetical protein, at 109,151 to 110,140
GFF1894
GFF1895 - Metal-pseudopaline receptor CntO, at 110,353 to 112,782
GFF1895
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.185 kb on + strand at 108.186 kb on - strand at 108.284 kb on + strand at 108.285 kb on - strand at 108.798 kb on + strand, within GFF1893 at 108.799 kb on - strand, within GFF1893 at 108.799 kb on - strand, within GFF1893 at 108.822 kb on - strand, within GFF1893 at 109.026 kb on + strand, within GFF1893 at 109.026 kb on + strand, within GFF1893 at 109.026 kb on + strand, within GFF1893 at 109.027 kb on - strand, within GFF1893 at 109.079 kb on + strand, within GFF1893 at 109.079 kb on + strand, within GFF1893 at 109.079 kb on + strand, within GFF1893 at 109.080 kb on - strand, within GFF1893 at 109.080 kb on - strand, within GFF1893 at 109.080 kb on - strand, within GFF1893 at 109.080 kb on - strand, within GFF1893 at 109.298 kb on + strand, within GFF1894 at 109.298 kb on + strand, within GFF1894 at 109.299 kb on - strand, within GFF1894 at 109.856 kb on + strand, within GFF1894 at 109.857 kb on - strand, within GFF1894 at 109.857 kb on - strand, within GFF1894 at 109.857 kb on - strand, within GFF1894 at 109.934 kb on + strand, within GFF1894 at 109.935 kb on - strand, within GFF1894 at 109.935 kb on - strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.937 kb on + strand, within GFF1894 at 109.938 kb on - strand, within GFF1894 at 109.938 kb on - strand, within GFF1894 at 109.938 kb on - strand, within GFF1894 at 109.938 kb on - strand, within GFF1894 at 109.938 kb on - strand, within GFF1894 at 109.945 kb on + strand, within GFF1894 at 109.945 kb on + strand, within GFF1894 at 109.998 kb on + strand, within GFF1894 at 109.998 kb on + strand, within GFF1894 at 109.998 kb on + strand, within GFF1894 at 109.999 kb on - strand, within GFF1894 at 110.181 kb on + strand at 110.252 kb on - strand at 110.262 kb on + strand at 110.262 kb on + strand at 110.263 kb on - strand at 110.295 kb on - strand at 110.335 kb on + strand at 110.335 kb on + strand at 110.335 kb on + strand at 110.336 kb on - strand at 110.688 kb on + strand, within GFF1895 at 110.689 kb on - strand, within GFF1895 at 110.689 kb on - strand, within GFF1895 at 110.776 kb on + strand, within GFF1895 at 111.092 kb on - strand, within GFF1895
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 108,185 + +1.0 108,186 - +1.0 108,284 + -0.8 108,285 - +0.0 108,798 + GFF1893 0.37 -0.9 108,799 - GFF1893 0.37 -0.0 108,799 - GFF1893 0.37 +0.6 108,822 - GFF1893 0.41 -0.7 109,026 + GFF1893 0.77 +0.0 109,026 + GFF1893 0.77 -0.9 109,026 + GFF1893 0.77 +0.1 109,027 - GFF1893 0.77 +0.6 109,079 + GFF1893 0.87 -0.4 109,079 + GFF1893 0.87 -1.5 109,079 + GFF1893 0.87 -1.4 109,080 - GFF1893 0.87 +2.1 109,080 - GFF1893 0.87 -2.0 109,080 - GFF1893 0.87 -0.1 109,080 - GFF1893 0.87 +0.2 109,298 + GFF1894 0.15 +0.9 109,298 + GFF1894 0.15 +0.6 109,299 - GFF1894 0.15 +0.0 109,856 + GFF1894 0.71 +1.1 109,857 - GFF1894 0.71 -0.5 109,857 - GFF1894 0.71 -0.7 109,857 - GFF1894 0.71 -0.1 109,934 + GFF1894 0.79 -0.1 109,935 - GFF1894 0.79 -0.6 109,935 - GFF1894 0.79 +0.8 109,937 + GFF1894 0.79 -1.4 109,937 + GFF1894 0.79 +0.6 109,937 + GFF1894 0.79 -0.2 109,937 + GFF1894 0.79 -1.5 109,937 + GFF1894 0.79 -0.3 109,937 + GFF1894 0.79 -0.1 109,937 + GFF1894 0.79 +1.0 109,937 + GFF1894 0.79 +1.9 109,938 - GFF1894 0.79 +0.7 109,938 - GFF1894 0.79 -0.6 109,938 - GFF1894 0.79 +1.1 109,938 - GFF1894 0.79 +0.9 109,938 - GFF1894 0.79 +0.0 109,945 + GFF1894 0.80 +0.2 109,945 + GFF1894 0.80 +0.2 109,998 + GFF1894 0.86 +0.8 109,998 + GFF1894 0.86 -0.1 109,998 + GFF1894 0.86 -1.0 109,999 - GFF1894 0.86 -0.2 110,181 + +0.3 110,252 - -1.0 110,262 + +1.1 110,262 + -0.3 110,263 - +0.5 110,295 - +2.2 110,335 + -1.1 110,335 + +0.2 110,335 + +0.1 110,336 - +0.2 110,688 + GFF1895 0.14 -0.2 110,689 - GFF1895 0.14 -0.1 110,689 - GFF1895 0.14 +0.1 110,776 + GFF1895 0.17 -2.4 111,092 - GFF1895 0.30 +0.4
Or see this region's nucleotide sequence