Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1458 and GFF1459 are separated by 72 nucleotides GFF1459 and GFF1460 are separated by 8 nucleotides
GFF1458 - Phosphoglycerate transporter protein, at 229,399 to 230,724
GFF1458
GFF1459 - Gamma-glutamylputrescine oxidoreductase, at 230,797 to 232,188
GFF1459
GFF1460 - Actin cross-linking toxin VgrG1, at 232,197 to 233,585
GFF1460
Position (kb) 230
231
232
233 Strain fitness (log2 ratio) -2
-1
0
1 at 229.844 kb on - strand, within GFF1458 at 229.892 kb on - strand, within GFF1458 at 229.968 kb on + strand, within GFF1458 at 229.969 kb on - strand, within GFF1458 at 230.128 kb on + strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.129 kb on - strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.434 kb on + strand, within GFF1458 at 230.435 kb on - strand, within GFF1458 at 230.435 kb on - strand, within GFF1458 at 230.566 kb on + strand, within GFF1458 at 230.567 kb on - strand, within GFF1458 at 231.037 kb on + strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.038 kb on - strand, within GFF1459 at 231.136 kb on + strand, within GFF1459 at 231.175 kb on + strand, within GFF1459 at 231.175 kb on + strand, within GFF1459 at 231.450 kb on + strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.451 kb on - strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.655 kb on + strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.656 kb on - strand, within GFF1459 at 231.658 kb on + strand, within GFF1459 at 231.658 kb on + strand, within GFF1459 at 231.659 kb on - strand, within GFF1459 at 231.659 kb on - strand, within GFF1459 at 231.757 kb on + strand, within GFF1459 at 231.757 kb on + strand, within GFF1459 at 231.916 kb on + strand, within GFF1459 at 232.139 kb on + strand at 232.140 kb on - strand at 232.140 kb on - strand at 232.452 kb on + strand, within GFF1460 at 232.452 kb on + strand, within GFF1460 at 232.452 kb on + strand, within GFF1460 at 232.453 kb on - strand, within GFF1460 at 232.603 kb on + strand, within GFF1460 at 232.604 kb on - strand, within GFF1460 at 232.668 kb on + strand, within GFF1460 at 232.668 kb on + strand, within GFF1460 at 232.668 kb on + strand, within GFF1460 at 232.669 kb on - strand, within GFF1460 at 232.669 kb on - strand, within GFF1460 at 232.820 kb on - strand, within GFF1460 at 233.109 kb on + strand, within GFF1460 at 233.110 kb on - strand, within GFF1460
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 229,844 - GFF1458 0.34 -0.3 229,892 - GFF1458 0.37 -0.2 229,968 + GFF1458 0.43 +0.4 229,969 - GFF1458 0.43 -0.3 230,128 + GFF1458 0.55 +0.0 230,129 - GFF1458 0.55 -0.1 230,129 - GFF1458 0.55 +1.1 230,129 - GFF1458 0.55 -0.5 230,434 + GFF1458 0.78 +1.0 230,434 + GFF1458 0.78 +0.1 230,434 + GFF1458 0.78 -0.3 230,434 + GFF1458 0.78 -0.5 230,435 - GFF1458 0.78 +0.0 230,435 - GFF1458 0.78 +1.4 230,566 + GFF1458 0.88 +0.1 230,567 - GFF1458 0.88 -0.0 231,037 + GFF1459 0.17 +0.3 231,038 - GFF1459 0.17 -0.5 231,038 - GFF1459 0.17 +0.5 231,038 - GFF1459 0.17 -0.3 231,038 - GFF1459 0.17 -1.1 231,136 + GFF1459 0.24 +0.6 231,175 + GFF1459 0.27 +0.4 231,175 + GFF1459 0.27 -1.9 231,450 + GFF1459 0.47 +0.2 231,451 - GFF1459 0.47 -0.3 231,451 - GFF1459 0.47 +0.2 231,451 - GFF1459 0.47 -1.2 231,655 + GFF1459 0.62 -0.3 231,655 + GFF1459 0.62 -0.1 231,655 + GFF1459 0.62 +0.7 231,655 + GFF1459 0.62 +0.6 231,655 + GFF1459 0.62 +0.6 231,656 - GFF1459 0.62 -0.9 231,656 - GFF1459 0.62 -1.2 231,656 - GFF1459 0.62 -0.0 231,656 - GFF1459 0.62 -1.5 231,658 + GFF1459 0.62 -0.3 231,658 + GFF1459 0.62 -0.8 231,659 - GFF1459 0.62 +0.6 231,659 - GFF1459 0.62 -0.6 231,757 + GFF1459 0.69 +0.1 231,757 + GFF1459 0.69 +0.0 231,916 + GFF1459 0.80 -0.9 232,139 + +0.7 232,140 - +0.2 232,140 - -1.0 232,452 + GFF1460 0.18 +0.3 232,452 + GFF1460 0.18 +0.3 232,452 + GFF1460 0.18 +1.4 232,453 - GFF1460 0.18 +0.2 232,603 + GFF1460 0.29 -0.8 232,604 - GFF1460 0.29 -0.7 232,668 + GFF1460 0.34 +0.2 232,668 + GFF1460 0.34 -0.6 232,668 + GFF1460 0.34 -0.4 232,669 - GFF1460 0.34 -0.2 232,669 - GFF1460 0.34 +0.1 232,820 - GFF1460 0.45 -0.1 233,109 + GFF1460 0.66 -0.2 233,110 - GFF1460 0.66 -0.4
Or see this region's nucleotide sequence