Strain Fitness in Pseudomonas sp. DMC3 around GFF1304

Experiment: D-Glucose and casaminos (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1302 and GFF1303 overlap by 1 nucleotidesGFF1303 and GFF1304 are separated by 197 nucleotidesGFF1304 and GFF1305 are separated by 202 nucleotides GFF1302 - Regulator of RpoS, at 58,316 to 59,497 GFF1302 GFF1303 - hypothetical protein, at 59,497 to 59,979 GFF1303 GFF1304 - Transaldolase B, at 60,177 to 61,103 GFF1304 GFF1305 - hypothetical protein, at 61,306 to 62,262 GFF1305 Position (kb) 60 61 62Strain fitness (log2 ratio) -2 -1 0 1at 60.165 kb on + strandat 60.165 kb on + strandat 60.165 kb on + strandat 60.165 kb on + strandat 60.165 kb on + strandat 60.165 kb on + strandat 60.166 kb on - strandat 60.166 kb on - strandat 60.166 kb on - strandat 60.166 kb on - strandat 60.166 kb on - strandat 60.443 kb on + strand, within GFF1304at 60.444 kb on - strand, within GFF1304at 60.444 kb on - strand, within GFF1304at 60.475 kb on + strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.476 kb on - strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.490 kb on + strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.491 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.494 kb on - strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.499 kb on + strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.500 kb on - strand, within GFF1304at 60.544 kb on + strand, within GFF1304at 60.544 kb on + strand, within GFF1304at 60.568 kb on + strand, within GFF1304at 60.568 kb on + strand, within GFF1304at 60.569 kb on - strand, within GFF1304at 60.569 kb on - strand, within GFF1304at 60.577 kb on + strand, within GFF1304at 60.577 kb on + strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.578 kb on - strand, within GFF1304at 60.581 kb on + strand, within GFF1304at 60.582 kb on - strand, within GFF1304at 60.769 kb on + strand, within GFF1304at 60.769 kb on + strand, within GFF1304at 60.770 kb on - strand, within GFF1304at 61.062 kb on + strandat 61.062 kb on + strandat 61.062 kb on + strandat 61.063 kb on - strandat 61.063 kb on - strandat 61.063 kb on - strandat 61.115 kb on - strandat 61.119 kb on + strandat 61.120 kb on - strandat 61.241 kb on + strandat 61.241 kb on + strandat 61.307 kb on + strandat 61.307 kb on + strandat 61.307 kb on + strandat 61.308 kb on - strandat 61.330 kb on + strandat 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.427 kb on + strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.428 kb on - strand, within GFF1305at 61.431 kb on + strand, within GFF1305at 61.431 kb on + strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.432 kb on - strand, within GFF1305at 61.470 kb on + strand, within GFF1305at 61.470 kb on + strand, within GFF1305at 61.471 kb on - strand, within GFF1305at 61.625 kb on + strand, within GFF1305at 61.625 kb on + strand, within GFF1305at 61.626 kb on - strand, within GFF1305at 61.666 kb on - strand, within GFF1305at 61.666 kb on - strand, within GFF1305at 61.821 kb on - strand, within GFF1305at 61.821 kb on - strand, within GFF1305at 61.911 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.036 kb on + strand, within GFF1305at 62.037 kb on - strand, within GFF1305at 62.037 kb on - strand, within GFF1305

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C)
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60,165 + -1.5
60,165 + -0.2
60,165 + -0.3
60,165 + +0.4
60,165 + +0.6
60,165 + -1.3
60,166 - +0.5
60,166 - -0.3
60,166 - -0.0
60,166 - +0.7
60,166 - -0.7
60,443 + GFF1304 0.29 +0.6
60,444 - GFF1304 0.29 -0.4
60,444 - GFF1304 0.29 +1.3
60,475 + GFF1304 0.32 -1.1
60,476 - GFF1304 0.32 +0.5
60,476 - GFF1304 0.32 -0.3
60,476 - GFF1304 0.32 -1.3
60,476 - GFF1304 0.32 +0.3
60,490 + GFF1304 0.34 -0.0
60,490 + GFF1304 0.34 +0.5
60,490 + GFF1304 0.34 +0.6
60,491 - GFF1304 0.34 -0.0
60,491 - GFF1304 0.34 -1.5
60,491 - GFF1304 0.34 -0.2
60,491 - GFF1304 0.34 -1.3
60,491 - GFF1304 0.34 -0.9
60,491 - GFF1304 0.34 -0.5
60,491 - GFF1304 0.34 +0.2
60,494 - GFF1304 0.34 +0.7
60,494 - GFF1304 0.34 -1.2
60,494 - GFF1304 0.34 -0.3
60,494 - GFF1304 0.34 -0.6
60,494 - GFF1304 0.34 -0.1
60,494 - GFF1304 0.34 -0.5
60,494 - GFF1304 0.34 -0.1
60,494 - GFF1304 0.34 +1.1
60,494 - GFF1304 0.34 -1.3
60,494 - GFF1304 0.34 -0.6
60,499 + GFF1304 0.35 -1.2
60,499 + GFF1304 0.35 -1.2
60,499 + GFF1304 0.35 +0.9
60,500 - GFF1304 0.35 +0.5
60,500 - GFF1304 0.35 -1.3
60,500 - GFF1304 0.35 +0.8
60,500 - GFF1304 0.35 -0.8
60,500 - GFF1304 0.35 +0.9
60,544 + GFF1304 0.40 +0.2
60,544 + GFF1304 0.40 -0.2
60,568 + GFF1304 0.42 -1.1
60,568 + GFF1304 0.42 -1.2
60,569 - GFF1304 0.42 +0.8
60,569 - GFF1304 0.42 +0.3
60,577 + GFF1304 0.43 -0.5
60,577 + GFF1304 0.43 +0.1
60,578 - GFF1304 0.43 -0.5
60,578 - GFF1304 0.43 -0.3
60,578 - GFF1304 0.43 -1.0
60,581 + GFF1304 0.44 -0.3
60,582 - GFF1304 0.44 -2.1
60,769 + GFF1304 0.64 +0.7
60,769 + GFF1304 0.64 -1.1
60,770 - GFF1304 0.64 -0.0
61,062 + -0.5
61,062 + -0.9
61,062 + +0.6
61,063 - -0.1
61,063 - -0.2
61,063 - -0.9
61,115 - +0.0
61,119 + -0.6
61,120 - -0.5
61,241 + +0.6
61,241 + +0.1
61,307 + -0.7
61,307 + -0.2
61,307 + +0.2
61,308 - +1.5
61,330 + -0.4
61,427 + GFF1305 0.13 -0.7
61,427 + GFF1305 0.13 -0.5
61,427 + GFF1305 0.13 -2.6
61,427 + GFF1305 0.13 +0.7
61,427 + GFF1305 0.13 +0.4
61,427 + GFF1305 0.13 -0.1
61,427 + GFF1305 0.13 +0.6
61,427 + GFF1305 0.13 +1.3
61,427 + GFF1305 0.13 +0.2
61,427 + GFF1305 0.13 -0.7
61,427 + GFF1305 0.13 -1.1
61,428 - GFF1305 0.13 -1.9
61,428 - GFF1305 0.13 -0.5
61,428 - GFF1305 0.13 -0.2
61,428 - GFF1305 0.13 -2.5
61,428 - GFF1305 0.13 +0.4
61,428 - GFF1305 0.13 +0.1
61,428 - GFF1305 0.13 +0.3
61,428 - GFF1305 0.13 +0.2
61,428 - GFF1305 0.13 -2.5
61,428 - GFF1305 0.13 +0.2
61,431 + GFF1305 0.13 -0.9
61,431 + GFF1305 0.13 +0.5
61,432 - GFF1305 0.13 +0.4
61,432 - GFF1305 0.13 -0.1
61,432 - GFF1305 0.13 -0.1
61,470 + GFF1305 0.17 +0.2
61,470 + GFF1305 0.17 -0.4
61,471 - GFF1305 0.17 +0.5
61,625 + GFF1305 0.33 -0.3
61,625 + GFF1305 0.33 +0.3
61,626 - GFF1305 0.33 -0.4
61,666 - GFF1305 0.38 +0.4
61,666 - GFF1305 0.38 -0.1
61,821 - GFF1305 0.54 -0.5
61,821 - GFF1305 0.54 +0.2
61,911 + GFF1305 0.63 +0.3
62,036 + GFF1305 0.76 -0.7
62,036 + GFF1305 0.76 -0.5
62,036 + GFF1305 0.76 +1.0
62,036 + GFF1305 0.76 -0.9
62,036 + GFF1305 0.76 +0.1
62,037 - GFF1305 0.76 +0.5
62,037 - GFF1305 0.76 +0.3

Or see this region's nucleotide sequence