Experiment: D-Glucose and casaminos (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF998 and GFF999 are separated by 76 nucleotides GFF999 and GFF1000 are separated by 33 nucleotides GFF1000 and GFF1001 are separated by 109 nucleotides GFF1001 and GFF1002 overlap by 19 nucleotides
GFF998 - HTH-type transcriptional regulator CynR, at 337,079 to 338,029
GFF998
GFF999 - hypothetical protein, at 338,106 to 338,747
GFF999
GFF1000 - Bifunctional transcriptional activator/DNA repair enzyme Ada, at 338,781 to 339,863
GFF1000
GFF1001 - hypothetical protein, at 339,973 to 340,404
GFF1001
GFF1002 - Putative glutamate--cysteine ligase 2, at 340,386 to 341,504
GFF1002
Position (kb) 338
339
340 Strain fitness (log2 ratio) -2
-1
0
1 at 338.047 kb on + strand at 338.048 kb on - strand at 338.048 kb on - strand at 338.107 kb on + strand at 338.131 kb on + strand at 338.284 kb on + strand, within GFF999 at 338.284 kb on + strand, within GFF999 at 338.284 kb on + strand, within GFF999 at 338.285 kb on - strand, within GFF999 at 338.285 kb on - strand, within GFF999 at 338.441 kb on + strand, within GFF999 at 338.442 kb on - strand, within GFF999 at 338.442 kb on - strand, within GFF999 at 338.532 kb on + strand, within GFF999 at 338.578 kb on + strand, within GFF999 at 338.605 kb on + strand, within GFF999 at 338.680 kb on - strand, within GFF999 at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.710 kb on + strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.711 kb on - strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.741 kb on + strand at 338.742 kb on - strand at 338.995 kb on + strand, within GFF1000 at 338.996 kb on - strand, within GFF1000 at 338.996 kb on - strand, within GFF1000 at 338.996 kb on - strand, within GFF1000 at 339.110 kb on - strand, within GFF1000 at 339.149 kb on + strand, within GFF1000 at 339.315 kb on - strand, within GFF1000 at 339.315 kb on - strand, within GFF1000 at 339.790 kb on + strand at 339.791 kb on - strand at 339.791 kb on - strand at 339.855 kb on + strand at 339.855 kb on + strand at 339.855 kb on + strand at 339.856 kb on - strand at 339.875 kb on - strand at 340.005 kb on + strand at 340.048 kb on + strand, within GFF1001 at 340.315 kb on + strand, within GFF1001 at 340.551 kb on + strand, within GFF1002 at 340.811 kb on + strand, within GFF1002 at 340.811 kb on + strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002 at 340.812 kb on - strand, within GFF1002
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose and casaminos (C) remove 338,047 + +0.3 338,048 - +0.9 338,048 - +0.7 338,107 + -0.2 338,131 + +0.1 338,284 + GFF999 0.28 +0.6 338,284 + GFF999 0.28 -0.2 338,284 + GFF999 0.28 +0.4 338,285 - GFF999 0.28 +0.3 338,285 - GFF999 0.28 +0.4 338,441 + GFF999 0.52 -1.1 338,442 - GFF999 0.52 +0.0 338,442 - GFF999 0.52 -2.1 338,532 + GFF999 0.66 -1.6 338,578 + GFF999 0.74 +1.3 338,605 + GFF999 0.78 -1.0 338,680 - GFF999 0.89 -0.2 338,710 + -1.6 338,710 + +0.8 338,710 + -1.3 338,710 + -0.6 338,710 + +0.3 338,710 + -0.2 338,710 + -0.3 338,710 + -0.3 338,711 - +0.5 338,711 - -0.3 338,711 - +1.0 338,711 - +0.7 338,711 - -0.7 338,711 - -0.9 338,711 - +0.6 338,741 + +0.5 338,741 + +0.1 338,741 + -2.6 338,741 + +0.1 338,741 + -0.4 338,742 - +0.1 338,995 + GFF1000 0.20 -0.6 338,996 - GFF1000 0.20 +0.3 338,996 - GFF1000 0.20 +0.6 338,996 - GFF1000 0.20 -0.6 339,110 - GFF1000 0.30 +1.7 339,149 + GFF1000 0.34 -1.6 339,315 - GFF1000 0.49 -0.9 339,315 - GFF1000 0.49 +0.1 339,790 + -1.4 339,791 - -1.1 339,791 - +0.6 339,855 + +0.5 339,855 + -0.5 339,855 + -0.9 339,856 - -0.4 339,875 - -0.3 340,005 + -0.8 340,048 + GFF1001 0.17 -0.8 340,315 + GFF1001 0.79 +0.7 340,551 + GFF1002 0.15 +0.3 340,811 + GFF1002 0.38 +0.2 340,811 + GFF1002 0.38 -1.0 340,812 - GFF1002 0.38 +0.3 340,812 - GFF1002 0.38 +0.5 340,812 - GFF1002 0.38 +1.1 340,812 - GFF1002 0.38 +0.3
Or see this region's nucleotide sequence