Strain Fitness in Escherichia coli HS(pFamp)R (ATCC 700891) around OHPLBJKB_02672

Experiment: bur MOI10

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntOHPLBJKB_02671 and OHPLBJKB_02672 are separated by 129 nucleotidesOHPLBJKB_02672 and OHPLBJKB_02673 overlap by 28 nucleotides OHPLBJKB_02671: OHPLBJKB_02671 - Cytochrome c-type protein TorC, at 2,782,547 to 2,783,719 _02671 OHPLBJKB_02672: OHPLBJKB_02672 - TorCAD operon transcriptional regulatory protein TorR, at 2,783,849 to 2,784,541 _02672 OHPLBJKB_02673: OHPLBJKB_02673 - Periplasmic protein TorT, at 2,784,514 to 2,785,542 _02673 Position (kb) 2783 2784 2785Strain fitness (log2 ratio) -2 -1 0 1 2at 2782.925 kb on - strand, within OHPLBJKB_02671at 2783.100 kb on + strand, within OHPLBJKB_02671at 2783.191 kb on + strand, within OHPLBJKB_02671at 2783.289 kb on + strand, within OHPLBJKB_02671at 2783.289 kb on + strand, within OHPLBJKB_02671at 2783.290 kb on - strand, within OHPLBJKB_02671at 2783.290 kb on - strand, within OHPLBJKB_02671at 2783.294 kb on - strand, within OHPLBJKB_02671at 2783.294 kb on - strand, within OHPLBJKB_02671at 2783.389 kb on + strand, within OHPLBJKB_02671at 2783.418 kb on + strand, within OHPLBJKB_02671at 2783.418 kb on + strand, within OHPLBJKB_02671at 2783.419 kb on - strand, within OHPLBJKB_02671at 2783.419 kb on - strand, within OHPLBJKB_02671at 2783.419 kb on - strand, within OHPLBJKB_02671at 2783.423 kb on - strand, within OHPLBJKB_02671at 2783.423 kb on - strand, within OHPLBJKB_02671at 2783.536 kb on + strand, within OHPLBJKB_02671at 2783.538 kb on + strand, within OHPLBJKB_02671at 2783.539 kb on - strand, within OHPLBJKB_02671at 2783.547 kb on + strand, within OHPLBJKB_02671at 2783.560 kb on + strand, within OHPLBJKB_02671at 2783.560 kb on + strand, within OHPLBJKB_02671at 2783.561 kb on - strand, within OHPLBJKB_02671at 2783.561 kb on - strand, within OHPLBJKB_02671at 2783.561 kb on - strand, within OHPLBJKB_02671at 2783.561 kb on - strand, within OHPLBJKB_02671at 2783.622 kb on - strandat 2783.759 kb on - strandat 2783.770 kb on - strandat 2783.770 kb on - strandat 2783.770 kb on - strandat 2783.770 kb on - strandat 2783.909 kb on + strandat 2783.928 kb on - strand, within OHPLBJKB_02672at 2783.972 kb on - strand, within OHPLBJKB_02672at 2783.988 kb on + strand, within OHPLBJKB_02672at 2783.994 kb on + strand, within OHPLBJKB_02672at 2783.994 kb on + strand, within OHPLBJKB_02672at 2784.112 kb on + strand, within OHPLBJKB_02672at 2784.113 kb on - strand, within OHPLBJKB_02672at 2784.113 kb on - strand, within OHPLBJKB_02672at 2784.396 kb on + strand, within OHPLBJKB_02672at 2784.397 kb on - strand, within OHPLBJKB_02672at 2784.401 kb on - strand, within OHPLBJKB_02672at 2784.401 kb on - strand, within OHPLBJKB_02672at 2784.401 kb on - strand, within OHPLBJKB_02672at 2784.454 kb on - strand, within OHPLBJKB_02672at 2784.465 kb on + strand, within OHPLBJKB_02672at 2784.490 kb on - strandat 2784.516 kb on - strandat 2784.548 kb on + strandat 2784.622 kb on + strand, within OHPLBJKB_02673at 2784.665 kb on - strand, within OHPLBJKB_02673at 2784.665 kb on - strand, within OHPLBJKB_02673at 2784.904 kb on - strand, within OHPLBJKB_02673at 2784.939 kb on + strand, within OHPLBJKB_02673at 2784.948 kb on + strand, within OHPLBJKB_02673at 2785.143 kb on + strand, within OHPLBJKB_02673at 2785.144 kb on - strand, within OHPLBJKB_02673at 2785.177 kb on + strand, within OHPLBJKB_02673at 2785.178 kb on - strand, within OHPLBJKB_02673at 2785.213 kb on - strand, within OHPLBJKB_02673at 2785.248 kb on + strand, within OHPLBJKB_02673at 2785.249 kb on - strand, within OHPLBJKB_02673at 2785.313 kb on - strand, within OHPLBJKB_02673at 2785.313 kb on - strand, within OHPLBJKB_02673at 2785.348 kb on - strand, within OHPLBJKB_02673at 2785.352 kb on + strand, within OHPLBJKB_02673at 2785.528 kb on + strandat 2785.534 kb on + strandat 2785.534 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction bur MOI10
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2,782,925 - OHPLBJKB_02671 0.32 +0.6
2,783,100 + OHPLBJKB_02671 0.47 -2.3
2,783,191 + OHPLBJKB_02671 0.55 -1.1
2,783,289 + OHPLBJKB_02671 0.63 +2.2
2,783,289 + OHPLBJKB_02671 0.63 -0.9
2,783,290 - OHPLBJKB_02671 0.63 -0.3
2,783,290 - OHPLBJKB_02671 0.63 -0.4
2,783,294 - OHPLBJKB_02671 0.64 -0.7
2,783,294 - OHPLBJKB_02671 0.64 +0.5
2,783,389 + OHPLBJKB_02671 0.72 -2.7
2,783,418 + OHPLBJKB_02671 0.74 -0.2
2,783,418 + OHPLBJKB_02671 0.74 +1.6
2,783,419 - OHPLBJKB_02671 0.74 -0.3
2,783,419 - OHPLBJKB_02671 0.74 +0.5
2,783,419 - OHPLBJKB_02671 0.74 +0.8
2,783,423 - OHPLBJKB_02671 0.75 +0.4
2,783,423 - OHPLBJKB_02671 0.75 -0.9
2,783,536 + OHPLBJKB_02671 0.84 +1.1
2,783,538 + OHPLBJKB_02671 0.84 +0.3
2,783,539 - OHPLBJKB_02671 0.85 -1.4
2,783,547 + OHPLBJKB_02671 0.85 -1.2
2,783,560 + OHPLBJKB_02671 0.86 -1.2
2,783,560 + OHPLBJKB_02671 0.86 +0.5
2,783,561 - OHPLBJKB_02671 0.86 +0.9
2,783,561 - OHPLBJKB_02671 0.86 -0.8
2,783,561 - OHPLBJKB_02671 0.86 -1.7
2,783,561 - OHPLBJKB_02671 0.86 +0.2
2,783,622 - +1.0
2,783,759 - +2.1
2,783,770 - +0.5
2,783,770 - +0.2
2,783,770 - +0.7
2,783,770 - +0.4
2,783,909 + +1.1
2,783,928 - OHPLBJKB_02672 0.11 -1.0
2,783,972 - OHPLBJKB_02672 0.18 -0.5
2,783,988 + OHPLBJKB_02672 0.20 +0.1
2,783,994 + OHPLBJKB_02672 0.21 +1.3
2,783,994 + OHPLBJKB_02672 0.21 -1.3
2,784,112 + OHPLBJKB_02672 0.38 +0.4
2,784,113 - OHPLBJKB_02672 0.38 +1.3
2,784,113 - OHPLBJKB_02672 0.38 -0.3
2,784,396 + OHPLBJKB_02672 0.79 +1.2
2,784,397 - OHPLBJKB_02672 0.79 -1.3
2,784,401 - OHPLBJKB_02672 0.80 -1.4
2,784,401 - OHPLBJKB_02672 0.80 +0.5
2,784,401 - OHPLBJKB_02672 0.80 +1.5
2,784,454 - OHPLBJKB_02672 0.87 +0.1
2,784,465 + OHPLBJKB_02672 0.89 +0.4
2,784,490 - +1.6
2,784,516 - +0.1
2,784,548 + +1.5
2,784,622 + OHPLBJKB_02673 0.10 -1.3
2,784,665 - OHPLBJKB_02673 0.15 -0.9
2,784,665 - OHPLBJKB_02673 0.15 -1.2
2,784,904 - OHPLBJKB_02673 0.38 +1.7
2,784,939 + OHPLBJKB_02673 0.41 -0.6
2,784,948 + OHPLBJKB_02673 0.42 +0.5
2,785,143 + OHPLBJKB_02673 0.61 +2.1
2,785,144 - OHPLBJKB_02673 0.61 -0.6
2,785,177 + OHPLBJKB_02673 0.64 +0.8
2,785,178 - OHPLBJKB_02673 0.65 -1.7
2,785,213 - OHPLBJKB_02673 0.68 -0.5
2,785,248 + OHPLBJKB_02673 0.71 +0.4
2,785,249 - OHPLBJKB_02673 0.71 +0.5
2,785,313 - OHPLBJKB_02673 0.78 -0.3
2,785,313 - OHPLBJKB_02673 0.78 -0.4
2,785,348 - OHPLBJKB_02673 0.81 -0.2
2,785,352 + OHPLBJKB_02673 0.81 -0.4
2,785,528 + -0.1
2,785,534 + -0.4
2,785,534 + -2.0

Or see this region's nucleotide sequence