Strain Fitness in Escherichia fergusonii Becca around EFB2_04116

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
4,322,620	+		EFB2_04114	0.28	+0.8
4,322,656	+		EFB2_04114	0.33	+1.0
4,322,656	+		EFB2_04114	0.33	-1.4
4,322,656	+		EFB2_04114	0.33	-0.4
4,322,656	+		EFB2_04114	0.33	+1.8
4,322,656	+		EFB2_04114	0.33	-0.4
4,322,656	+		EFB2_04114	0.33	-0.3
4,322,656	+		EFB2_04114	0.33	-0.3
4,322,656	+		EFB2_04114	0.33	-1.2
4,322,656	+		EFB2_04114	0.33	+1.6
4,322,657	-		EFB2_04114	0.33	-0.3
4,322,657	-		EFB2_04114	0.33	+0.2
4,322,657	-		EFB2_04114	0.33	-0.2
4,322,716	+		EFB2_04114	0.42	+0.5
4,322,717	-		EFB2_04114	0.42	+0.3
4,322,717	-		EFB2_04114	0.42	+1.5
4,322,717	-		EFB2_04114	0.42	-0.0
4,322,717	-		EFB2_04114	0.42	-0.4
4,322,717	-		EFB2_04114	0.42	+1.7
4,322,763	+		EFB2_04114	0.49	-0.1
4,322,764	-		EFB2_04114	0.49	+0.5
4,322,764	-		EFB2_04114	0.49	+1.6
4,322,778	+		EFB2_04114	0.51	-3.7
4,322,778	+		EFB2_04114	0.51	+0.1
4,322,778	+		EFB2_04114	0.51	-1.4
4,322,779	-		EFB2_04114	0.51	-1.0
4,322,779	-		EFB2_04114	0.51	-1.2
4,322,779	-		EFB2_04114	0.51	-1.3
4,322,779	-		EFB2_04114	0.51	-1.2
4,322,779	-		EFB2_04114	0.51	+0.9
4,322,779	-		EFB2_04114	0.51	-0.8
4,322,828	-		EFB2_04114	0.58	-2.6
4,322,828	-		EFB2_04114	0.58	-0.4
4,322,857	+		EFB2_04114	0.63	+0.4
4,322,857	+		EFB2_04114	0.63	-0.6
4,322,857	+		EFB2_04114	0.63	+0.9
4,322,857	+		EFB2_04114	0.63	+0.5
4,322,857	+		EFB2_04114	0.63	+0.8
4,322,857	+		EFB2_04114	0.63	-1.1
4,322,858	-		EFB2_04114	0.63	+0.6
4,322,858	-		EFB2_04114	0.63	-1.0
4,322,858	-		EFB2_04114	0.63	-2.4
4,322,858	-		EFB2_04114	0.63	-0.2
4,322,858	-		EFB2_04114	0.63	-0.3
4,322,858	-		EFB2_04114	0.63	-0.2
4,322,858	-		EFB2_04114	0.63	-1.7
4,322,858	-		EFB2_04114	0.63	+0.3
4,322,858	-		EFB2_04114	0.63	+0.9
4,322,858	-		EFB2_04114	0.63	+0.6
4,322,858	-		EFB2_04114	0.63	-1.3
4,322,858	-		EFB2_04114	0.63	-1.1
4,322,858	-		EFB2_04114	0.63	+1.3
4,322,858	-		EFB2_04114	0.63	-0.2
4,322,902	+		EFB2_04114	0.69	+1.4
4,322,902	+		EFB2_04114	0.69	+1.2
4,322,903	-		EFB2_04114	0.69	+0.4
4,322,903	-		EFB2_04114	0.69	+1.7
4,322,903	-		EFB2_04114	0.69	+0.4
4,322,903	-		EFB2_04114	0.69	+0.4
4,322,911	-		EFB2_04114	0.70	-0.1
4,322,954	+		EFB2_04114	0.77	-2.0
4,322,954	+		EFB2_04114	0.77	+0.6
4,322,954	+		EFB2_04114	0.77	-1.1
4,322,954	+		EFB2_04114	0.77	-0.4
4,322,954	+		EFB2_04114	0.77	-0.1
4,322,954	+		EFB2_04114	0.77	+1.0
4,322,954	+		EFB2_04114	0.77	+1.7
4,322,954	+		EFB2_04114	0.77	+0.5
4,322,954	+		EFB2_04114	0.77	+1.5
4,322,954	+		EFB2_04114	0.77	+0.5
4,322,954	+		EFB2_04114	0.77	-2.5
4,322,954	+		EFB2_04114	0.77	-1.8
4,322,954	+		EFB2_04114	0.77	-1.4
4,322,954	+		EFB2_04114	0.77	-0.8
4,322,954	+		EFB2_04114	0.77	+3.4
4,322,954	+		EFB2_04114	0.77	+1.9
4,322,954	+		EFB2_04114	0.77	+0.9
4,322,955	-		EFB2_04114	0.77	+1.6
4,322,955	-		EFB2_04114	0.77	+0.9
4,322,955	-		EFB2_04114	0.77	-2.4
4,322,955	-		EFB2_04114	0.77	-2.6
4,322,955	-		EFB2_04114	0.77	-3.2
4,322,955	-		EFB2_04114	0.77	-2.2
4,322,955	-		EFB2_04114	0.77	-1.1
4,322,955	-		EFB2_04114	0.77	-0.2
4,322,955	-		EFB2_04114	0.77	+1.5
4,322,955	-		EFB2_04114	0.77	+0.6
4,322,955	-		EFB2_04114	0.77	-0.0
4,322,955	-		EFB2_04114	0.77	+0.6
4,322,955	-		EFB2_04114	0.77	-0.9
4,322,955	-		EFB2_04114	0.77	+1.2
4,322,955	-		EFB2_04114	0.77	-0.0
4,322,955	-		EFB2_04114	0.77	-0.6
4,322,955	-		EFB2_04114	0.77	+1.8
4,322,955	-		EFB2_04114	0.77	-3.4
4,322,955	-		EFB2_04114	0.77	-0.8
4,322,955	-		EFB2_04114	0.77	+1.1
4,322,955	-		EFB2_04114	0.77	+0.7
4,323,001	-		EFB2_04114	0.84	-0.5
4,323,006	+		EFB2_04114	0.84	+0.8
4,323,007	-		EFB2_04114	0.85	-3.6
4,323,012	+		EFB2_04114	0.85	+0.5
4,323,013	-		EFB2_04114	0.85	+1.4
4,323,031	+		EFB2_04114	0.88	+0.5
4,323,032	-		EFB2_04114	0.88	+0.1
4,323,068	-				-1.3
4,323,068	-				+0.1
4,323,068	-				+0.3
4,323,141	+				-1.8
4,323,141	+				-0.3
4,323,141	+				+0.7
4,323,141	+				-0.9
4,323,141	+				-1.4
4,323,141	+				+0.7
4,323,141	+				+0.1
4,323,141	+				-1.5
4,323,141	+				+0.9
4,323,142	-				+0.3
4,323,142	-				-0.5
4,323,142	-				+0.9
4,323,142	-				+0.2
4,323,142	-				-1.2
4,323,142	-				+1.1
4,323,142	-				+0.4
4,323,142	-				+0.7
4,323,142	-				+0.4
4,323,142	-				-0.1
4,323,142	-				+0.3
4,323,147	+				+1.1
4,323,147	+				-1.4
4,323,147	+				+0.6
4,323,147	+				-0.1
4,323,147	+				-4.5
4,323,147	+				-0.8
4,323,147	+				-2.0
4,323,147	+				+0.0
4,323,147	+				+0.4
4,323,148	-				+0.6
4,323,171	+		EFB2_04115	0.13	-2.5
4,323,171	+		EFB2_04115	0.13	-1.2
4,323,171	+		EFB2_04115	0.13	-0.8
4,323,172	-		EFB2_04115	0.14	-3.2
4,323,172	-		EFB2_04115	0.14	+0.0
4,323,172	-		EFB2_04115	0.14	+0.5
4,323,174	+		EFB2_04115	0.14	-2.8
4,323,174	+		EFB2_04115	0.14	+0.5
4,323,174	+		EFB2_04115	0.14	-0.6
4,323,174	+		EFB2_04115	0.14	-0.8
4,323,174	+		EFB2_04115	0.14	-0.1
4,323,174	+		EFB2_04115	0.14	+0.5
4,323,175	-		EFB2_04115	0.14	-1.1
4,323,175	-		EFB2_04115	0.14	+1.4
4,323,175	-		EFB2_04115	0.14	-0.7
4,323,180	+		EFB2_04115	0.15	+1.0
4,323,181	-		EFB2_04115	0.16	+0.7
4,323,267	+		EFB2_04115	0.34	+0.4
4,323,267	+		EFB2_04115	0.34	-0.1
4,323,267	+		EFB2_04115	0.34	+0.6
4,323,267	+		EFB2_04115	0.34	+0.0
4,323,267	+		EFB2_04115	0.34	-2.7
4,323,267	+		EFB2_04115	0.34	+1.0
4,323,267	+		EFB2_04115	0.34	+1.2
4,323,267	+		EFB2_04115	0.34	-0.0
4,323,267	+		EFB2_04115	0.34	+2.5
4,323,267	+		EFB2_04115	0.34	+0.1
4,323,267	+		EFB2_04115	0.34	+1.1
4,323,267	+		EFB2_04115	0.34	+0.4
4,323,267	+		EFB2_04115	0.34	+0.8
4,323,267	+		EFB2_04115	0.34	+0.4
4,323,267	+		EFB2_04115	0.34	-1.1
4,323,267	+		EFB2_04115	0.34	+0.1
4,323,267	+		EFB2_04115	0.34	+0.6
4,323,267	+		EFB2_04115	0.34	+0.3
4,323,267	+		EFB2_04115	0.34	+0.3
4,323,267	+		EFB2_04115	0.34	-1.7
4,323,267	+		EFB2_04115	0.34	-2.8
4,323,267	+		EFB2_04115	0.34	+0.5
4,323,267	+		EFB2_04115	0.34	+0.8
4,323,268	-		EFB2_04115	0.34	-1.8
4,323,268	-		EFB2_04115	0.34	+1.1
4,323,268	-		EFB2_04115	0.34	-3.6
4,323,268	-		EFB2_04115	0.34	+0.6
4,323,268	-		EFB2_04115	0.34	+2.4
4,323,268	-		EFB2_04115	0.34	+0.3
4,323,268	-		EFB2_04115	0.34	+0.8
4,323,268	-		EFB2_04115	0.34	+0.3
4,323,268	-		EFB2_04115	0.34	+0.5
4,323,268	-		EFB2_04115	0.34	+1.6
4,323,268	-		EFB2_04115	0.34	-0.6
4,323,268	-		EFB2_04115	0.34	+1.4
4,323,268	-		EFB2_04115	0.34	+1.7
4,323,268	-		EFB2_04115	0.34	-0.7
4,323,326	+		EFB2_04115	0.47	+0.6
4,323,326	+		EFB2_04115	0.47	+2.3
4,323,327	-		EFB2_04115	0.47	+0.2
4,323,416	+		EFB2_04115	0.66	+2.6
4,323,417	-		EFB2_04115	0.67	-2.5
4,323,430	+		EFB2_04115	0.69	+1.3
4,323,430	+		EFB2_04115	0.69	+2.0
4,323,430	+		EFB2_04115	0.69	-1.6
4,323,430	+		EFB2_04115	0.69	+1.5
4,323,430	+		EFB2_04115	0.69	+0.3
4,323,430	+		EFB2_04115	0.69	-1.4
4,323,430	+		EFB2_04115	0.69	-2.4
4,323,430	+		EFB2_04115	0.69	+0.7
4,323,430	+		EFB2_04115	0.69	+0.1
4,323,430	+		EFB2_04115	0.69	+0.3
4,323,430	+		EFB2_04115	0.69	+0.3
4,323,430	+		EFB2_04115	0.69	-0.1
4,323,430	+		EFB2_04115	0.69	+1.5
4,323,430	+		EFB2_04115	0.69	+0.1
4,323,430	+		EFB2_04115	0.69	+0.7
4,323,430	+		EFB2_04115	0.69	-0.1
4,323,430	+		EFB2_04115	0.69	+0.7
4,323,430	+		EFB2_04115	0.69	-0.6
4,323,431	-		EFB2_04115	0.70	-1.4
4,323,431	-		EFB2_04115	0.70	+0.5
4,323,431	-		EFB2_04115	0.70	-0.0
4,323,431	-		EFB2_04115	0.70	-0.0
4,323,431	-		EFB2_04115	0.70	+2.0
4,323,431	-		EFB2_04115	0.70	-0.2
4,323,431	-		EFB2_04115	0.70	-1.8
4,323,434	+		EFB2_04115	0.70	+0.1
4,323,434	+		EFB2_04115	0.70	+0.7
4,323,434	+		EFB2_04115	0.70	-1.8
4,323,434	+		EFB2_04115	0.70	+0.3
4,323,435	-		EFB2_04115	0.71	-0.1
4,323,435	-		EFB2_04115	0.71	-3.0
4,323,435	-		EFB2_04115	0.71	-0.1
4,323,496	+		EFB2_04115	0.84	-0.2
4,323,496	+		EFB2_04115	0.84	+0.1
4,323,496	+		EFB2_04115	0.84	-0.3
4,323,497	-		EFB2_04115	0.84	+0.1
4,323,497	-		EFB2_04115	0.84	+1.2
4,323,497	-		EFB2_04115	0.84	-0.2
4,323,497	-		EFB2_04115	0.84	+0.6
4,323,497	-		EFB2_04115	0.84	+0.5
4,323,513	+		EFB2_04115	0.87	-0.9
4,323,513	+		EFB2_04115	0.87	-0.7
4,323,513	+		EFB2_04115	0.87	-1.0
4,323,514	-		EFB2_04115	0.88	+0.0
4,323,561	+				+1.1
4,323,562	-				-0.9
4,323,580	-				-2.8
4,323,610	-				+0.1
4,323,634	+				+0.2
4,323,634	+				-1.0
4,323,634	+				-0.6
4,323,634	+				-1.1
4,323,635	-				-2.5
4,323,635	-				+1.7
4,323,635	-				+1.2
4,323,635	-				-0.2
4,323,687	+				-0.4
4,323,687	+				-2.0
4,323,687	+				-2.5
4,323,688	-				+0.9
4,323,774	+		EFB2_04116	0.16	+1.2
4,323,774	+		EFB2_04116	0.16	-0.0
4,323,774	+		EFB2_04116	0.16	+1.6
4,323,774	+		EFB2_04116	0.16	-1.0
4,323,775	-		EFB2_04116	0.16	-0.3
4,323,775	-		EFB2_04116	0.16	+0.2
4,323,848	+		EFB2_04116	0.23	-2.5
4,323,848	+		EFB2_04116	0.23	+0.1
4,323,848	+		EFB2_04116	0.23	-0.4
4,323,848	+		EFB2_04116	0.23	+0.9
4,323,848	+		EFB2_04116	0.23	-0.6
4,323,849	-		EFB2_04116	0.23	-0.3
4,323,849	-		EFB2_04116	0.23	-3.1
4,323,849	-		EFB2_04116	0.23	+1.0
4,323,906	+		EFB2_04116	0.28	-0.1
4,323,906	+		EFB2_04116	0.28	-0.3
4,323,906	+		EFB2_04116	0.28	-0.5
4,323,907	-		EFB2_04116	0.28	-1.2
4,323,907	-		EFB2_04116	0.28	+0.9
4,323,907	-		EFB2_04116	0.28	-0.3
4,323,907	-		EFB2_04116	0.28	+1.7
4,323,907	-		EFB2_04116	0.28	-3.4
4,323,991	+		EFB2_04116	0.35	-0.8
4,323,991	+		EFB2_04116	0.35	+0.0
4,323,991	+		EFB2_04116	0.35	+1.2
4,323,991	+		EFB2_04116	0.35	+0.7
4,323,992	-		EFB2_04116	0.35	+1.2
4,323,992	-		EFB2_04116	0.35	+1.5
4,323,992	-		EFB2_04116	0.35	-0.4
4,323,992	-		EFB2_04116	0.35	+0.4
4,324,011	+		EFB2_04116	0.36	-0.7
4,324,011	+		EFB2_04116	0.36	-1.4
4,324,011	+		EFB2_04116	0.36	-0.4
4,324,012	-		EFB2_04116	0.37	-1.1
4,324,012	-		EFB2_04116	0.37	+0.9
4,324,012	-		EFB2_04116	0.37	-0.0
4,324,012	-		EFB2_04116	0.37	+1.5
4,324,012	-		EFB2_04116	0.37	-0.2
4,324,012	-		EFB2_04116	0.37	-0.1
4,324,014	+		EFB2_04116	0.37	+0.5
4,324,108	+		EFB2_04116	0.45	+1.0
4,324,108	+		EFB2_04116	0.45	+0.7
4,324,109	-		EFB2_04116	0.45	-0.2
4,324,119	+		EFB2_04116	0.46	+2.4
4,324,119	+		EFB2_04116	0.46	+1.1
4,324,119	+		EFB2_04116	0.46	-0.1
4,324,119	+		EFB2_04116	0.46	-2.1
4,324,120	-		EFB2_04116	0.46	+1.3
4,324,120	-		EFB2_04116	0.46	+1.1
4,324,120	-		EFB2_04116	0.46	-0.3
4,324,122	+		EFB2_04116	0.46	-0.3
4,324,122	+		EFB2_04116	0.46	+0.8
4,324,122	+		EFB2_04116	0.46	-1.7
4,324,123	-		EFB2_04116	0.46	+1.7
4,324,123	-		EFB2_04116	0.46	+0.5
4,324,123	-		EFB2_04116	0.46	-0.6
4,324,208	+		EFB2_04116	0.53	-0.1
4,324,219	+		EFB2_04116	0.54	+0.3
4,324,219	+		EFB2_04116	0.54	+0.7
4,324,219	+		EFB2_04116	0.54	-2.6
4,324,219	+		EFB2_04116	0.54	+1.2
4,324,219	+		EFB2_04116	0.54	-0.6
4,324,219	+		EFB2_04116	0.54	-2.8
4,324,219	+		EFB2_04116	0.54	+2.9
4,324,219	+		EFB2_04116	0.54	-0.2
4,324,220	-		EFB2_04116	0.54	+1.0
4,324,220	-		EFB2_04116	0.54	+0.5
4,324,220	-		EFB2_04116	0.54	-0.5
4,324,220	-		EFB2_04116	0.54	+0.3
4,324,220	-		EFB2_04116	0.54	-0.8
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