Strain Fitness in Escherichia fergusonii Becca around EFB2_03400

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,551,043	-		EFB2_03399	0.53	+0.4
3,551,086	+		EFB2_03399	0.55	-0.0
3,551,087	-		EFB2_03399	0.55	-0.9
3,551,288	+		EFB2_03399	0.65	-0.5
3,551,304	-		EFB2_03399	0.65	-1.8
3,551,304	-		EFB2_03399	0.65	-1.4
3,551,304	-		EFB2_03399	0.65	-0.7
3,551,304	-		EFB2_03399	0.65	-1.3
3,551,304	-		EFB2_03399	0.65	-1.4
3,551,322	-		EFB2_03399	0.66	+0.5
3,551,322	-		EFB2_03399	0.66	+0.3
3,551,357	+		EFB2_03399	0.68	+0.6
3,551,357	+		EFB2_03399	0.68	+0.5
3,551,358	-		EFB2_03399	0.68	-2.6
3,551,358	-		EFB2_03399	0.68	-0.1
3,551,358	-		EFB2_03399	0.68	-1.8
3,551,405	-		EFB2_03399	0.70	+0.4
3,551,479	-		EFB2_03399	0.74	-0.1
3,551,603	+		EFB2_03399	0.80	-0.4
3,551,603	+		EFB2_03399	0.80	-2.2
3,551,603	+		EFB2_03399	0.80	+0.9
3,551,603	+		EFB2_03399	0.80	-0.8
3,551,603	+		EFB2_03399	0.80	-0.1
3,551,604	-		EFB2_03399	0.80	-1.7
3,551,604	-		EFB2_03399	0.80	+0.4
3,551,644	+		EFB2_03399	0.82	-0.1
3,551,644	+		EFB2_03399	0.82	-1.3
3,551,644	+		EFB2_03399	0.82	-1.1
3,551,644	+		EFB2_03399	0.82	-0.7
3,551,645	-		EFB2_03399	0.82	-2.1
3,551,645	-		EFB2_03399	0.82	+1.7
3,551,645	-		EFB2_03399	0.82	+0.1
3,551,645	-		EFB2_03399	0.82	-2.4
3,551,645	-		EFB2_03399	0.82	-0.3
3,551,721	+		EFB2_03399	0.86	+0.6
3,551,722	-		EFB2_03399	0.86	-0.6
3,551,722	-		EFB2_03399	0.86	-3.0
3,551,722	-		EFB2_03399	0.86	+0.6
3,551,722	-		EFB2_03399	0.86	-0.5
3,551,722	-		EFB2_03399	0.86	-0.4
3,551,722	-		EFB2_03399	0.86	-2.4
3,551,722	-		EFB2_03399	0.86	-2.0
3,551,757	+		EFB2_03399	0.88	+0.2
3,551,758	-		EFB2_03399	0.88	-0.3
3,551,767	+		EFB2_03399	0.88	+0.6
3,551,767	+		EFB2_03399	0.88	-1.0
3,551,767	+		EFB2_03399	0.88	-0.7
3,551,768	-		EFB2_03399	0.88	-2.4
3,551,768	-		EFB2_03399	0.88	-0.5
3,551,883	+				+1.3
3,551,883	+				-1.0
3,551,883	+				-2.5
3,551,884	-				+0.8
3,551,885	+				-1.0
3,551,885	+				-0.6
3,551,886	-				-1.6
3,551,886	-				-3.1
3,551,923	+				+0.2
3,551,924	-				-1.1
3,551,931	+				+0.9
3,551,932	-				+0.8
3,551,932	-				-1.0
3,551,966	+				-0.6
3,551,983	+				+1.1
3,551,984	-				-2.1
3,551,984	-				-2.0
3,551,984	-				+0.2
3,552,016	+				+0.9
3,552,016	+				-0.2
3,552,016	+				-0.9
3,552,016	+				+0.9
3,552,017	-				-0.5
3,552,017	-				-0.6
3,552,017	-				-1.6
3,552,017	-				+2.2
3,552,030	+				-1.0
3,552,030	+				+0.7
3,552,030	+				-1.7
3,552,031	-				+2.9
3,552,031	-				+0.4
3,552,071	-				-1.9
3,552,071	-				+0.4
3,552,160	+		EFB2_03400	0.24	+0.8
3,552,161	-		EFB2_03400	0.25	+0.2
3,552,161	-		EFB2_03400	0.25	-2.1
3,552,210	-		EFB2_03400	0.33	-1.1
3,552,248	+		EFB2_03400	0.40	+0.2
3,552,248	+		EFB2_03400	0.40	-0.2
3,552,249	-		EFB2_03400	0.40	-2.2
3,552,249	-		EFB2_03400	0.40	-1.3
3,552,249	-		EFB2_03400	0.40	+1.4
3,552,249	-		EFB2_03400	0.40	-1.3
3,552,249	-		EFB2_03400	0.40	+2.5
3,552,249	-		EFB2_03400	0.40	+0.7
3,552,250	+		EFB2_03400	0.40	+1.5
3,552,250	+		EFB2_03400	0.40	-0.2
3,552,250	+		EFB2_03400	0.40	+1.0
3,552,250	+		EFB2_03400	0.40	-0.3
3,552,250	+		EFB2_03400	0.40	-0.2
3,552,250	+		EFB2_03400	0.40	+0.3
3,552,251	-		EFB2_03400	0.40	+1.4
3,552,251	-		EFB2_03400	0.40	+1.1
3,552,251	-		EFB2_03400	0.40	-0.1
3,552,251	-		EFB2_03400	0.40	+1.1
3,552,251	-		EFB2_03400	0.40	+0.2
3,552,251	-		EFB2_03400	0.40	+0.2
3,552,304	+		EFB2_03400	0.50	-2.1
3,552,305	-		EFB2_03400	0.50	-1.6
3,552,312	+		EFB2_03400	0.51	+0.5
3,552,334	-		EFB2_03400	0.55	+1.2
3,552,343	+		EFB2_03400	0.56	-1.0
3,552,409	+		EFB2_03400	0.68	-0.7
3,552,409	+		EFB2_03400	0.68	-2.0
3,552,409	+		EFB2_03400	0.68	-2.5
3,552,409	+		EFB2_03400	0.68	-1.6
3,552,409	+		EFB2_03400	0.68	-0.4
3,552,409	+		EFB2_03400	0.68	+0.6
3,552,409	+		EFB2_03400	0.68	-0.7
3,552,409	+		EFB2_03400	0.68	+1.6
3,552,409	+		EFB2_03400	0.68	+0.2
3,552,410	-		EFB2_03400	0.68	-0.2
3,552,410	-		EFB2_03400	0.68	+0.5
3,552,463	+		EFB2_03400	0.77	+0.0
3,552,464	-		EFB2_03400	0.77	+1.2
3,552,464	-		EFB2_03400	0.77	+2.2
3,552,503	+		EFB2_03400	0.84	-1.3
3,552,503	+		EFB2_03400	0.84	-0.5
3,552,504	-		EFB2_03400	0.84	-0.7
3,552,527	+		EFB2_03400	0.88	-2.3
3,552,527	+		EFB2_03400	0.88	-0.4
3,552,527	+		EFB2_03400	0.88	+0.8
3,552,527	+		EFB2_03400	0.88	-2.5
3,552,527	+		EFB2_03400	0.88	-0.5
3,552,527	+		EFB2_03400	0.88	+0.1
3,552,528	-		EFB2_03400	0.89	-0.8
3,552,528	-		EFB2_03400	0.89	+0.4
3,552,528	-		EFB2_03400	0.89	-3.6
3,552,528	-		EFB2_03400	0.89	+1.2
3,552,528	-		EFB2_03400	0.89	+0.2
3,552,530	-		EFB2_03400	0.89	+2.1
3,552,577	+				+0.1
3,552,590	+				+0.8
3,552,601	+				+0.3
3,552,601	+				-1.2
3,552,602	-				+1.2
3,552,602	-				+0.6
3,552,602	-				+0.0
3,552,602	-				-3.4
3,552,602	-				+3.6
3,552,602	-				+1.2
3,552,746	+				-2.1
3,552,746	+				+1.7
3,552,747	-				-3.0
3,552,763	+				-2.0
3,552,764	-				-0.6
3,552,764	-				-3.7
3,552,823	+				-0.3
3,552,837	+				-0.4
3,552,838	-				+2.3
3,552,904	+		EFB2_03401	0.12	+0.3
3,552,904	+		EFB2_03401	0.12	-1.5
3,552,905	-		EFB2_03401	0.12	+0.2
3,552,905	-		EFB2_03401	0.12	-0.9
3,552,905	-		EFB2_03401	0.12	-0.5
3,552,905	-		EFB2_03401	0.12	+2.8
3,552,926	+		EFB2_03401	0.13	-0.8
3,552,926	+		EFB2_03401	0.13	+0.1
3,552,926	+		EFB2_03401	0.13	+1.2
3,552,926	+		EFB2_03401	0.13	+1.6
3,552,926	+		EFB2_03401	0.13	+1.5
3,552,927	-		EFB2_03401	0.13	+0.2
3,552,927	-		EFB2_03401	0.13	-1.6
3,552,927	-		EFB2_03401	0.13	+0.4
3,552,927	-		EFB2_03401	0.13	+0.9
3,552,927	-		EFB2_03401	0.13	+1.4
3,552,950	+		EFB2_03401	0.14	-0.7
3,552,951	-		EFB2_03401	0.14	+0.1
3,552,951	-		EFB2_03401	0.14	-0.6
3,552,951	-		EFB2_03401	0.14	-0.3
3,553,004	+		EFB2_03401	0.16	+2.0
3,553,070	-		EFB2_03401	0.18	-0.6
3,553,114	+		EFB2_03401	0.20	+0.8
3,553,114	+		EFB2_03401	0.20	+0.8
3,553,114	+		EFB2_03401	0.20	+0.1
3,553,114	+		EFB2_03401	0.20	+0.4
3,553,114	+		EFB2_03401	0.20	-1.0
3,553,114	+		EFB2_03401	0.20	-0.7
3,553,114	+		EFB2_03401	0.20	+2.0
3,553,114	+		EFB2_03401	0.20	+0.5
3,553,114	+		EFB2_03401	0.20	-1.3
3,553,114	+		EFB2_03401	0.20	-1.4
3,553,114	+		EFB2_03401	0.20	-2.8
3,553,114	+		EFB2_03401	0.20	+0.5
3,553,114	+		EFB2_03401	0.20	+1.5
3,553,114	+		EFB2_03401	0.20	+0.9
3,553,114	+		EFB2_03401	0.20	+0.4
3,553,114	+		EFB2_03401	0.20	-0.8
3,553,114	+		EFB2_03401	0.20	+1.0
3,553,114	+		EFB2_03401	0.20	+1.1
3,553,114	+		EFB2_03401	0.20	-0.4
3,553,114	+		EFB2_03401	0.20	+3.0
3,553,114	+		EFB2_03401	0.20	+1.6
3,553,114	+		EFB2_03401	0.20	-2.8
3,553,115	-		EFB2_03401	0.20	+0.0
3,553,115	-		EFB2_03401	0.20	-2.0
3,553,115	-		EFB2_03401	0.20	+0.1
3,553,115	-		EFB2_03401	0.20	-0.9
3,553,115	-		EFB2_03401	0.20	-0.5
3,553,115	-		EFB2_03401	0.20	+0.6
3,553,115	-		EFB2_03401	0.20	-1.6
3,553,115	-		EFB2_03401	0.20	-0.1
3,553,115	-		EFB2_03401	0.20	+0.1
3,553,115	-		EFB2_03401	0.20	+0.1
3,553,115	-		EFB2_03401	0.20	+0.5
3,553,115	-		EFB2_03401	0.20	-0.7
3,553,115	-		EFB2_03401	0.20	+1.0
3,553,115	-		EFB2_03401	0.20	+1.2
3,553,115	-		EFB2_03401	0.20	-3.3
3,553,115	-		EFB2_03401	0.20	+0.1
3,553,117	+		EFB2_03401	0.20	-0.4
3,553,117	+		EFB2_03401	0.20	+0.2
3,553,117	+		EFB2_03401	0.20	+0.7
3,553,117	+		EFB2_03401	0.20	-0.9
3,553,117	+		EFB2_03401	0.20	+0.4
3,553,117	+		EFB2_03401	0.20	-3.0
3,553,117	+		EFB2_03401	0.20	-3.1
3,553,118	-		EFB2_03401	0.20	-0.3
3,553,118	-		EFB2_03401	0.20	+0.5
3,553,118	-		EFB2_03401	0.20	-1.2
3,553,118	-		EFB2_03401	0.20	-0.1
3,553,173	+		EFB2_03401	0.22	-0.4
3,553,173	+		EFB2_03401	0.22	+1.1
3,553,173	+		EFB2_03401	0.22	+0.2
3,553,173	+		EFB2_03401	0.22	-2.2
3,553,173	+		EFB2_03401	0.22	-2.1
3,553,173	+		EFB2_03401	0.22	+0.3
3,553,173	+		EFB2_03401	0.22	+1.0
3,553,173	+		EFB2_03401	0.22	-1.2
3,553,174	-		EFB2_03401	0.22	+1.3
3,553,174	-		EFB2_03401	0.22	+1.4
3,553,174	-		EFB2_03401	0.22	-0.3
3,553,174	-		EFB2_03401	0.22	+0.4
3,553,174	-		EFB2_03401	0.22	-0.0
3,553,174	-		EFB2_03401	0.22	+0.3
3,553,174	-		EFB2_03401	0.22	-3.2
3,553,174	-		EFB2_03401	0.22	+0.3
3,553,174	-		EFB2_03401	0.22	+0.3
3,553,174	-		EFB2_03401	0.22	-2.5
3,553,174	-		EFB2_03401	0.22	+0.9
3,553,174	-		EFB2_03401	0.22	-0.3
3,553,174	-		EFB2_03401	0.22	-0.6
3,553,175	+		EFB2_03401	0.22	+0.4
3,553,175	+		EFB2_03401	0.22	+1.5
3,553,175	+		EFB2_03401	0.22	-2.4
3,553,175	+		EFB2_03401	0.22	+1.4
3,553,259	+		EFB2_03401	0.25	-0.7
3,553,260	-		EFB2_03401	0.25	-0.1
3,553,273	+		EFB2_03401	0.26	+0.1
3,553,273	+		EFB2_03401	0.26	-2.6
3,553,273	+		EFB2_03401	0.26	-2.2
3,553,273	+		EFB2_03401	0.26	+0.7
3,553,273	+		EFB2_03401	0.26	-1.8
3,553,274	-		EFB2_03401	0.26	-0.3
3,553,274	-		EFB2_03401	0.26	+1.9
3,553,274	-		EFB2_03401	0.26	-2.8
3,553,274	-		EFB2_03401	0.26	+0.7
3,553,274	-		EFB2_03401	0.26	+1.5
3,553,348	+		EFB2_03401	0.28	+0.5
3,553,348	+		EFB2_03401	0.28	-0.1
3,553,348	+		EFB2_03401	0.28	-0.9
3,553,348	+		EFB2_03401	0.28	+2.7
3,553,348	+		EFB2_03401	0.28	-2.0
3,553,348	+		EFB2_03401	0.28	+0.4
3,553,348	+		EFB2_03401	0.28	-1.4
3,553,348	+		EFB2_03401	0.28	+0.5
3,553,349	-		EFB2_03401	0.28	+2.2
3,553,349	-		EFB2_03401	0.28	-0.5
3,553,349	-		EFB2_03401	0.28	+0.0
3,553,349	-		EFB2_03401	0.28	-1.1
3,553,349	-		EFB2_03401	0.28	-0.5
3,553,349	-		EFB2_03401	0.28	-0.3
3,553,349	-		EFB2_03401	0.28	+0.9
3,553,349	-		EFB2_03401	0.28	+0.3
3,553,349	-		EFB2_03401	0.28	+1.0
3,553,361	+		EFB2_03401	0.29	-0.4
3,553,362	-		EFB2_03401	0.29	-2.4
3,553,362	-		EFB2_03401	0.29	+1.7
3,553,362	-		EFB2_03401	0.29	+0.8
3,553,437	+		EFB2_03401	0.32	-2.1
3,553,437	+		EFB2_03401	0.32	-3.9
3,553,437	+		EFB2_03401	0.32	+1.7
3,553,437	+		EFB2_03401	0.32	+0.0
3,553,437	+		EFB2_03401	0.32	+0.7
3,553,437	+		EFB2_03401	0.32	-1.4
3,553,437	+		EFB2_03401	0.32	+1.0
3,553,437	+		EFB2_03401	0.32	+0.4
3,553,438	-		EFB2_03401	0.32	+0.2
3,553,438	-		EFB2_03401	0.32	-0.6
3,553,438	-		EFB2_03401	0.32	-1.3
3,553,438	-		EFB2_03401	0.32	+0.8
3,553,438	-		EFB2_03401	0.32	+0.0
3,553,438	-		EFB2_03401	0.32	+0.4
3,553,438	-		EFB2_03401	0.32	+1.4
3,553,501	+		EFB2_03401	0.34	+1.7
3,553,501	+		EFB2_03401	0.34	+1.5
3,553,501	+		EFB2_03401	0.34	-0.1
3,553,501	+		EFB2_03401	0.34	+0.2
3,553,502	-		EFB2_03401	0.34	+1.1
3,553,502	-		EFB2_03401	0.34	+1.8
3,553,502	-		EFB2_03401	0.34	+0.2
3,553,502	-		EFB2_03401	0.34	-0.4
3,553,567	+		EFB2_03401	0.37	+2.0
3,553,568	-		EFB2_03401	0.37	-1.4
3,553,576	-		EFB2_03401	0.37	-3.0
3,553,589	+		EFB2_03401	0.37	-1.9
3,553,589	+		EFB2_03401	0.37	-1.1
3,553,589	+		EFB2_03401	0.37	-0.2
3,553,589	+		EFB2_03401	0.37	+0.7
3,553,589	+		EFB2_03401	0.37	+0.8
3,553,589	+		EFB2_03401	0.37	-0.7
3,553,589	+		EFB2_03401	0.37	-0.4
3,553,589	+		EFB2_03401	0.37	-2.5
3,553,589	+		EFB2_03401	0.37	+2.0
3,553,589	+		EFB2_03401	0.37	+0.4
3,553,589	+		EFB2_03401	0.37	-1.6
3,553,590	-		EFB2_03401	0.37	+0.2
3,553,590	-		EFB2_03401	0.37	-0.7
3,553,590	-		EFB2_03401	0.37	+1.0
3,553,590	-		EFB2_03401	0.37	+0.9
3,553,590	-		EFB2_03401	0.37	-0.8
3,553,590	-		EFB2_03401	0.37	-0.3
3,553,590	-		EFB2_03401	0.37	+0.7
3,553,590	-		EFB2_03401	0.37	+2.8
3,553,590	-		EFB2_03401	0.37	-0.1