Strain Fitness in Escherichia fergusonii Becca around EFB2_03383

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,534,677	-		EFB2_03382	0.53	-1.3
3,534,751	-		EFB2_03382	0.57	-0.4
3,534,878	-		EFB2_03382	0.65	-0.9
3,534,878	-		EFB2_03382	0.65	-0.3
3,534,882	-		EFB2_03382	0.65	+1.8
3,534,882	-		EFB2_03382	0.65	+3.1
3,534,923	+		EFB2_03382	0.67	+1.3
3,534,923	+		EFB2_03382	0.67	+0.9
3,534,923	+		EFB2_03382	0.67	-1.6
3,534,924	-		EFB2_03382	0.67	+0.1
3,534,924	-		EFB2_03382	0.67	+1.1
3,534,928	+		EFB2_03382	0.67	-0.4
3,534,929	-		EFB2_03382	0.68	-3.1
3,535,010	-		EFB2_03382	0.72	+0.1
3,535,010	-		EFB2_03382	0.72	+0.9
3,535,055	-		EFB2_03382	0.75	-0.0
3,535,103	+		EFB2_03382	0.77	-1.0
3,535,103	+		EFB2_03382	0.77	-0.1
3,535,104	-		EFB2_03382	0.77	+1.9
3,535,104	-		EFB2_03382	0.77	-2.4
3,535,104	-		EFB2_03382	0.77	-0.4
3,535,159	+		EFB2_03382	0.81	-0.6
3,535,159	+		EFB2_03382	0.81	+0.9
3,535,159	+		EFB2_03382	0.81	-1.1
3,535,159	+		EFB2_03382	0.81	+0.1
3,535,160	-		EFB2_03382	0.81	-1.5
3,535,160	-		EFB2_03382	0.81	+2.7
3,535,160	-		EFB2_03382	0.81	+0.4
3,535,160	-		EFB2_03382	0.81	-0.5
3,535,164	-		EFB2_03382	0.81	+0.3
3,535,164	-		EFB2_03382	0.81	-0.1
3,535,164	-		EFB2_03382	0.81	-1.5
3,535,164	-		EFB2_03382	0.81	+0.6
3,535,199	+		EFB2_03382	0.83	+1.4
3,535,199	+		EFB2_03382	0.83	-0.4
3,535,199	+		EFB2_03382	0.83	-0.4
3,535,200	-		EFB2_03382	0.83	-1.3
3,535,200	-		EFB2_03382	0.83	-0.7
3,535,200	-		EFB2_03382	0.83	+0.7
3,535,200	-		EFB2_03382	0.83	-0.1
3,535,200	-		EFB2_03382	0.83	+2.0
3,535,236	-		EFB2_03382	0.85	+0.2
3,535,236	-		EFB2_03382	0.85	-1.0
3,535,241	+		EFB2_03382	0.85	-1.0
3,535,241	+		EFB2_03382	0.85	+3.0
3,535,241	+		EFB2_03382	0.85	+1.1
3,535,241	+		EFB2_03382	0.85	-1.7
3,535,241	+		EFB2_03382	0.85	-0.7
3,535,241	+		EFB2_03382	0.85	+2.2
3,535,241	+		EFB2_03382	0.85	+0.1
3,535,241	+		EFB2_03382	0.85	+1.2
3,535,241	+		EFB2_03382	0.85	-1.0
3,535,241	+		EFB2_03382	0.85	-0.9
3,535,241	+		EFB2_03382	0.85	-1.9
3,535,242	-		EFB2_03382	0.85	+3.2
3,535,242	-		EFB2_03382	0.85	+1.2
3,535,242	-		EFB2_03382	0.85	-0.3
3,535,242	-		EFB2_03382	0.85	-0.4
3,535,242	-		EFB2_03382	0.85	-1.6
3,535,242	-		EFB2_03382	0.85	-2.0
3,535,242	-		EFB2_03382	0.85	+3.0
3,535,242	-		EFB2_03382	0.85	-0.4
3,535,242	-		EFB2_03382	0.85	-1.1
3,535,243	+		EFB2_03382	0.85	-0.4
3,535,243	+		EFB2_03382	0.85	-1.1
3,535,243	+		EFB2_03382	0.85	+0.1
3,535,243	+		EFB2_03382	0.85	-2.3
3,535,243	+		EFB2_03382	0.85	-1.0
3,535,243	+		EFB2_03382	0.85	+1.4
3,535,243	+		EFB2_03382	0.85	+1.9
3,535,243	+		EFB2_03382	0.85	-1.0
3,535,243	+		EFB2_03382	0.85	-0.1
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	-2.0
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	-0.8
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	+0.1
3,535,244	-		EFB2_03382	0.85	-0.9
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	-2.6
3,535,244	-		EFB2_03382	0.85	-1.3
3,535,244	-		EFB2_03382	0.85	-2.2
3,535,244	-		EFB2_03382	0.85	+0.2
3,535,244	-		EFB2_03382	0.85	+0.9
3,535,244	-		EFB2_03382	0.85	+2.1
3,535,244	-		EFB2_03382	0.85	-1.1
3,535,244	-		EFB2_03382	0.85	-0.1
3,535,270	+		EFB2_03382	0.87	-1.4
3,535,271	-		EFB2_03382	0.87	+0.9
3,535,271	-		EFB2_03382	0.87	+0.9
3,535,271	-		EFB2_03382	0.87	-1.7
3,535,271	-		EFB2_03382	0.87	-0.6
3,535,294	+		EFB2_03382	0.88	-2.3
3,535,294	+		EFB2_03382	0.88	+2.4
3,535,294	+		EFB2_03382	0.88	+1.1
3,535,294	+		EFB2_03382	0.88	-0.9
3,535,294	+		EFB2_03382	0.88	-0.4
3,535,294	+		EFB2_03382	0.88	-0.6
3,535,294	+		EFB2_03382	0.88	+4.4
3,535,294	+		EFB2_03382	0.88	-0.9
3,535,294	+		EFB2_03382	0.88	-1.5
3,535,294	+		EFB2_03382	0.88	-0.9
3,535,294	+		EFB2_03382	0.88	+2.9
3,535,295	-		EFB2_03382	0.88	-1.0
3,535,295	-		EFB2_03382	0.88	-3.1
3,535,295	-		EFB2_03382	0.88	+2.4
3,535,295	-		EFB2_03382	0.88	-2.4
3,535,295	-		EFB2_03382	0.88	-0.6
3,535,295	-		EFB2_03382	0.88	+0.6
3,535,295	-		EFB2_03382	0.88	-0.8
3,535,295	-		EFB2_03382	0.88	+0.9
3,535,295	-		EFB2_03382	0.88	+1.1
3,535,295	-		EFB2_03382	0.88	-1.0
3,535,295	-		EFB2_03382	0.88	-1.3
3,535,298	+		EFB2_03382	0.88	+0.4
3,535,298	+		EFB2_03382	0.88	-0.7
3,535,298	+		EFB2_03382	0.88	-1.5
3,535,298	+		EFB2_03382	0.88	-0.1
3,535,298	+		EFB2_03382	0.88	+3.9
3,535,298	+		EFB2_03382	0.88	-1.1
3,535,298	+		EFB2_03382	0.88	+0.1
3,535,298	+		EFB2_03382	0.88	-1.0
3,535,298	+		EFB2_03382	0.88	+1.9
3,535,299	-		EFB2_03382	0.88	+0.4
3,535,299	-		EFB2_03382	0.88	+1.3
3,535,299	-		EFB2_03382	0.88	+0.1
3,535,299	-		EFB2_03382	0.88	+1.1
3,535,299	-		EFB2_03382	0.88	+2.3
3,535,299	-		EFB2_03382	0.88	+0.4
3,535,299	-		EFB2_03382	0.88	+2.2
3,535,299	-		EFB2_03382	0.88	+1.8
3,535,299	-		EFB2_03382	0.88	+0.9
3,535,299	-		EFB2_03382	0.88	+0.5
3,535,299	-		EFB2_03382	0.88	-1.1
3,535,299	-		EFB2_03382	0.88	-0.9
3,535,299	-		EFB2_03382	0.88	+1.0
3,535,314	-		EFB2_03382	0.89	-2.0
3,535,314	-		EFB2_03382	0.89	-1.4
3,535,344	-				-1.7
3,535,344	-				-0.9
3,535,346	+				+0.1
3,535,346	+				-0.1
3,535,347	-				-1.6
3,535,347	-				+1.6
3,535,347	-				-1.1
3,535,347	-				+2.9
3,535,391	+				+0.4
3,535,392	-				+2.4
3,535,531	-				+0.2
3,535,539	+		EFB2_03383	0.11	+1.4
3,535,539	+		EFB2_03383	0.11	+2.4
3,535,540	-		EFB2_03383	0.11	+0.7
3,535,540	-		EFB2_03383	0.11	+0.1
3,535,540	-		EFB2_03383	0.11	-2.3
3,535,540	-		EFB2_03383	0.11	-2.5
3,535,597	+		EFB2_03383	0.27	+0.1
3,535,598	-		EFB2_03383	0.28	-2.6
3,535,603	-		EFB2_03383	0.29	-1.6
3,535,716	+		EFB2_03383	0.61	-0.6
3,535,716	+		EFB2_03383	0.61	+3.9
3,535,716	+		EFB2_03383	0.61	-1.8
3,535,717	-		EFB2_03383	0.62	-1.6
3,535,717	-		EFB2_03383	0.62	+1.1
3,535,717	-		EFB2_03383	0.62	-1.0
3,535,717	-		EFB2_03383	0.62	+0.2
3,535,717	-		EFB2_03383	0.62	-1.6
3,535,717	-		EFB2_03383	0.62	-2.6
3,535,717	-		EFB2_03383	0.62	+0.6
3,535,717	-		EFB2_03383	0.62	+1.1
3,535,717	-		EFB2_03383	0.62	-1.6
3,535,717	-		EFB2_03383	0.62	-1.0
3,535,717	-		EFB2_03383	0.62	+0.5
3,535,717	-		EFB2_03383	0.62	+1.1
3,535,717	-		EFB2_03383	0.62	-0.1
3,535,717	-		EFB2_03383	0.62	+2.4
3,535,717	-		EFB2_03383	0.62	+0.9
3,535,717	-		EFB2_03383	0.62	-2.7
3,535,717	-		EFB2_03383	0.62	+0.2
3,535,753	+		EFB2_03383	0.72	-0.9
3,535,753	+		EFB2_03383	0.72	-1.5
3,535,753	+		EFB2_03383	0.72	+0.1
3,535,753	+		EFB2_03383	0.72	+2.8
3,535,754	-		EFB2_03383	0.72	-1.9
3,535,754	-		EFB2_03383	0.72	+0.9
3,535,754	-		EFB2_03383	0.72	-2.0
3,535,754	-		EFB2_03383	0.72	+1.6
3,535,754	-		EFB2_03383	0.72	+2.8
3,535,754	-		EFB2_03383	0.72	-0.7
3,535,754	-		EFB2_03383	0.72	+1.1
3,535,755	+		EFB2_03383	0.73	+0.1
3,535,755	+		EFB2_03383	0.73	+1.5
3,535,755	+		EFB2_03383	0.73	+3.4
3,535,755	+		EFB2_03383	0.73	-0.6
3,535,755	+		EFB2_03383	0.73	+2.4
3,535,755	+		EFB2_03383	0.73	+1.2
3,535,755	+		EFB2_03383	0.73	+0.5
3,535,755	+		EFB2_03383	0.73	+0.1
3,535,755	+		EFB2_03383	0.73	-0.9
3,535,755	+		EFB2_03383	0.73	-0.7
3,535,755	+		EFB2_03383	0.73	-1.3
3,535,756	-		EFB2_03383	0.73	-0.3
3,535,756	-		EFB2_03383	0.73	+0.1
3,535,756	-		EFB2_03383	0.73	+0.9
3,535,756	-		EFB2_03383	0.73	+0.1
3,535,756	-		EFB2_03383	0.73	-0.9
3,535,756	-		EFB2_03383	0.73	-1.1
3,535,756	-		EFB2_03383	0.73	+0.1
3,535,764	+		EFB2_03383	0.75	+1.5
3,535,764	+		EFB2_03383	0.75	-0.1
3,535,764	+		EFB2_03383	0.75	-1.7
3,535,764	+		EFB2_03383	0.75	+1.3
3,535,765	-		EFB2_03383	0.76	-0.4
3,535,765	-		EFB2_03383	0.76	+2.2
3,535,765	-		EFB2_03383	0.76	-2.0
3,535,765	-		EFB2_03383	0.76	-3.6
3,535,765	-		EFB2_03383	0.76	-2.4
3,535,765	-		EFB2_03383	0.76	+2.4
3,535,765	-		EFB2_03383	0.76	+2.6
3,535,765	-		EFB2_03383	0.76	+0.9
3,535,765	-		EFB2_03383	0.76	+0.9
3,535,765	-		EFB2_03383	0.76	-0.1
3,535,765	-		EFB2_03383	0.76	+2.4
3,535,765	-		EFB2_03383	0.76	-2.3
3,535,787	-		EFB2_03383	0.82	-1.3
3,535,811	+		EFB2_03383	0.89	+0.9
3,535,812	-		EFB2_03383	0.89	-2.3
3,535,812	-		EFB2_03383	0.89	+0.8
3,535,812	-		EFB2_03383	0.89	-1.3
3,535,812	-		EFB2_03383	0.89	-1.7
3,535,812	-		EFB2_03383	0.89	-1.1
3,535,812	-		EFB2_03383	0.89	+0.1
3,535,812	-		EFB2_03383	0.89	+1.2
3,535,812	-		EFB2_03383	0.89	+0.7
3,535,812	-		EFB2_03383	0.89	-1.3
3,535,845	-				-1.0
3,535,845	-				-1.6
3,535,845	-				-2.0
3,535,845	-				-2.1
3,535,849	+				-2.5
3,535,850	-				+0.2
3,535,884	+		EFB2_03384	0.10	+3.6
3,535,885	-		EFB2_03384	0.10	-2.0
3,535,885	-		EFB2_03384	0.10	+0.9
3,535,885	-		EFB2_03384	0.10	+3.0
3,535,885	-		EFB2_03384	0.10	+3.0
3,535,887	+		EFB2_03384	0.11	-2.0
3,535,888	-		EFB2_03384	0.11	-0.7
3,535,941	-		EFB2_03384	0.24	-0.1
3,535,941	-		EFB2_03384	0.24	-1.0
3,535,968	+		EFB2_03384	0.31	-0.6
3,535,969	-		EFB2_03384	0.31	+3.0
3,535,969	-		EFB2_03384	0.31	-0.6
3,535,969	-		EFB2_03384	0.31	+0.6
3,535,973	-		EFB2_03384	0.32	-1.1
3,535,986	-		EFB2_03384	0.35	+1.4
3,535,986	-		EFB2_03384	0.35	-1.3
3,535,986	-		EFB2_03384	0.35	+0.9
3,535,999	-		EFB2_03384	0.39	+0.3
3,536,086	-		EFB2_03384	0.60	-2.6
3,536,189	-		EFB2_03384	0.85	-1.6
3,536,256	+				+0.4
3,536,256	+				+0.9
3,536,256	+				-0.9
3,536,256	+				-1.5
3,536,257	-				+0.5
3,536,257	-				-2.5
3,536,257	-				+0.6
3,536,260	-				-2.0
3,536,260	-				-0.1
3,536,260	-				+0.3
3,536,288	+				-0.6
3,536,300	-				-1.1
3,536,360	+				-0.4
3,536,360	+				-2.2
3,536,361	-				-1.7
3,536,362	+				-1.1
3,536,411	+				+0.9
3,536,411	+				-0.0
3,536,411	+				+1.4
3,536,411	+				-0.7
3,536,412	-				-1.7
3,536,412	-				+1.3
3,536,463	+				-2.5
3,536,465	+				+0.4
3,536,465	+				+2.1
3,536,466	-				-0.6
3,536,466	-				-0.6
3,536,496	+				+1.0
3,536,497	-				+0.3
3,536,500	+				-1.3
3,536,501	-				+0.4
3,536,501	-				-1.7
3,536,502	+				-1.4
3,536,502	+				-2.5
3,536,502	+				-0.5
3,536,502	+				-0.8
3,536,502	+				+1.6
3,536,503	-				-0.3
3,536,503	-				+1.8
3,536,518	-				+0.4
3,536,624	+				-0.0
3,536,624	+				+0.3
3,536,624	+				+0.9
3,536,624	+				-0.6
3,536,624	+				-2.1
3,536,624	+				+0.7
3,536,625	-				-1.3
3,536,626	+				+0.0
3,536,626	+				+1.0
3,536,626	+				-0.1
3,536,626	+				+0.1
3,536,626	+				-3.4
3,536,626	+				-2.5
3,536,626	+				-1.1
3,536,627	-				-1.7
3,536,627	-				-0.7
3,536,627	-				-3.1
3,536,627	-				-1.2
3,536,627	-				+2.4
3,536,627	-				-1.8
3,536,627	-				-1.4
3,536,627	-				-0.7
3,536,627	-				-2.2
3,536,627	-				-0.7
3,536,633	+				+0.6
3,536,633	+				+0.5
3,536,641	-		EFB2_03385	0.12	+2.0
3,536,660	+		EFB2_03385	0.30	-0.5
3,536,661	-		EFB2_03385	0.31	+0.1
3,536,666	+		EFB2_03385	0.35	-1.7
3,536,666	+		EFB2_03385	0.35	+0.6
3,536,667	-		EFB2_03385	0.36	+0.6
3,536,671	+		EFB2_03385	0.40	-1.5
3,536,671	+		EFB2_03385	0.40	-1.5
3,536,671	+		EFB2_03385	0.40	+0.9
3,536,671	+		EFB2_03385	0.40	+0.7
3,536,672	-		EFB2_03385	0.41	-1.3
3,536,672	-		EFB2_03385	0.41	-2.4
3,536,672	-		EFB2_03385	0.41	-0.6
3,536,675	+		EFB2_03385	0.44	+0.2
3,536,675	+		EFB2_03385	0.44	-1.3
3,536,675	+		EFB2_03385	0.44	+1.0
3,536,676	-		EFB2_03385	0.44	-2.2
3,536,690	-		EFB2_03385	0.57	+0.4
3,536,714	+		EFB2_03385	0.80	-0.4
3,536,714	+		EFB2_03385	0.80	-0.7
3,536,714	+		EFB2_03385	0.80	-2.6
3,536,715	-		EFB2_03385	0.81	-0.4
3,536,717	+		EFB2_03385	0.82	+1.4
3,536,749	+				-0.4
3,536,769	+				+2.4
3,536,770	-				+2.6
3,536,770	-				-1.0
3,536,782	+				-1.1
3,536,782	+				-2.6
3,536,782	+				+1.6
3,536,782	+				+0.9
3,536,782	+				+1.1
3,536,782	+				+0.5
3,536,782	+				-2.6
3,536,783	-				-1.4
3,536,783	-				+2.0
3,536,783	-				+0.2
3,536,783	-				-0.9
3,536,783	-				-2.6
3,536,791	+				+1.4