Strain Fitness in Escherichia fergusonii Becca around EFB2_03267

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,413,372	+		EFB2_03265	0.79	+0.5
3,413,372	+		EFB2_03265	0.79	-0.4
3,413,373	-		EFB2_03265	0.79	+0.7
3,413,373	-		EFB2_03265	0.79	+0.1
3,413,373	-		EFB2_03265	0.79	+1.8
3,413,399	+		EFB2_03265	0.83	+0.5
3,413,399	+		EFB2_03265	0.83	-2.1
3,413,399	+		EFB2_03265	0.83	-0.2
3,413,399	+		EFB2_03265	0.83	+0.1
3,413,400	-		EFB2_03265	0.83	+0.8
3,413,400	-		EFB2_03265	0.83	-0.1
3,413,420	+		EFB2_03265	0.87	+1.3
3,413,420	+		EFB2_03265	0.87	+0.7
3,413,421	-		EFB2_03265	0.87	-1.5
3,413,421	-		EFB2_03265	0.87	-0.6
3,413,421	-		EFB2_03265	0.87	-0.9
3,413,428	-		EFB2_03265	0.88	-0.9
3,413,428	-		EFB2_03265	0.88	+0.6
3,413,506	+				+0.9
3,413,515	+				-1.6
3,413,516	-				-2.3
3,413,516	-				-0.3
3,413,516	-				+0.4
3,413,518	+				+0.1
3,413,518	+				-0.7
3,413,518	+				-0.9
3,413,519	-				+0.1
3,413,519	-				+2.1
3,413,519	-				+2.3
3,413,538	+				+0.6
3,413,538	+				+1.8
3,413,538	+				+0.8
3,413,539	-				+1.4
3,413,539	-				-2.2
3,413,542	+				-0.1
3,413,542	+				-0.1
3,413,542	+				+0.4
3,413,542	+				-1.6
3,413,542	+				-1.3
3,413,542	+				+0.6
3,413,542	+				+0.6
3,413,542	+				-0.9
3,413,543	-				-2.2
3,413,543	-				+0.2
3,413,543	-				+1.3
3,413,543	-				-3.3
3,413,543	-				-1.5
3,413,543	-				-2.0
3,413,543	-				-1.4
3,413,543	-				-0.6
3,413,543	-				+1.1
3,413,602	+				-1.4
3,413,602	+				+1.1
3,413,603	-				-1.7
3,413,615	+				+0.1
3,413,615	+				+0.1
3,413,615	+				+2.8
3,413,615	+				-0.2
3,413,615	+				-0.8
3,413,616	-				-1.7
3,413,616	-				-1.2
3,413,616	-				-0.4
3,413,616	-				+1.4
3,413,616	-				+2.9
3,413,620	+				+0.1
3,413,620	+				-1.5
3,413,620	+				+0.9
3,413,620	+				-0.8
3,413,620	+				+0.9
3,413,620	+				+0.5
3,413,620	+				-0.9
3,413,620	+				-2.7
3,413,620	+				-3.2
3,413,620	+				+0.2
3,413,621	-				-2.1
3,413,621	-				+1.8
3,413,627	+				-0.6
3,413,627	+				+1.6
3,413,627	+				+1.2
3,413,627	+				-0.1
3,413,718	+		EFB2_03266	0.21	-2.7
3,413,718	+		EFB2_03266	0.21	-0.2
3,413,718	+		EFB2_03266	0.21	-0.9
3,413,720	+		EFB2_03266	0.22	-1.4
3,413,720	+		EFB2_03266	0.22	-1.9
3,413,720	+		EFB2_03266	0.22	+1.6
3,413,720	+		EFB2_03266	0.22	-1.3
3,413,720	+		EFB2_03266	0.22	+0.7
3,413,720	+		EFB2_03266	0.22	-0.6
3,413,720	+		EFB2_03266	0.22	-1.2
3,413,721	-		EFB2_03266	0.22	-2.4
3,413,721	-		EFB2_03266	0.22	-2.3
3,413,751	+		EFB2_03266	0.26	-2.3
3,413,759	-		EFB2_03266	0.27	-2.4
3,413,759	-		EFB2_03266	0.27	-1.6
3,413,824	+		EFB2_03266	0.35	+1.1
3,413,824	+		EFB2_03266	0.35	-2.5
3,413,824	+		EFB2_03266	0.35	+1.0
3,413,824	+		EFB2_03266	0.35	-0.1
3,413,824	+		EFB2_03266	0.35	-1.7
3,413,824	+		EFB2_03266	0.35	+2.2
3,413,825	-		EFB2_03266	0.35	-2.0
3,413,825	-		EFB2_03266	0.35	-2.9
3,413,825	-		EFB2_03266	0.35	+0.2
3,413,876	+		EFB2_03266	0.42	-2.7
3,413,877	-		EFB2_03266	0.42	+1.9
3,413,906	+		EFB2_03266	0.46	+0.7
3,413,920	-		EFB2_03266	0.48	-1.6
3,413,926	+		EFB2_03266	0.49	-3.5
3,413,926	+		EFB2_03266	0.49	+1.2
3,413,930	+		EFB2_03266	0.49	-0.4
3,413,930	+		EFB2_03266	0.49	+0.2
3,413,930	+		EFB2_03266	0.49	-1.4
3,413,930	+		EFB2_03266	0.49	-2.7
3,413,930	+		EFB2_03266	0.49	+2.5
3,413,930	+		EFB2_03266	0.49	-2.6
3,413,931	-		EFB2_03266	0.49	+1.1
3,413,931	-		EFB2_03266	0.49	-0.7
3,413,931	-		EFB2_03266	0.49	-0.6
3,414,066	+		EFB2_03266	0.67	+0.6
3,414,101	+		EFB2_03266	0.72	+0.1
3,414,101	+		EFB2_03266	0.72	+0.9
3,414,102	-		EFB2_03266	0.72	+0.8
3,414,110	+		EFB2_03266	0.73	-0.6
3,414,111	-		EFB2_03266	0.73	+0.8
3,414,130	+		EFB2_03266	0.76	-0.0
3,414,185	+		EFB2_03266	0.83	-0.1
3,414,186	-		EFB2_03266	0.83	-2.7
3,414,186	-		EFB2_03266	0.83	-1.7
3,414,236	+		EFB2_03266	0.90	+1.5
3,414,236	+		EFB2_03266	0.90	+0.9
3,414,237	-		EFB2_03266	0.90	+1.4
3,414,270	+				-0.9
3,414,270	+				+1.3
3,414,270	+				-1.0
3,414,270	+				-1.5
3,414,270	+				+0.4
3,414,270	+				-0.0
3,414,270	+				+0.8
3,414,270	+				+0.3
3,414,270	+				-2.1
3,414,270	+				-0.1
3,414,270	+				+1.7
3,414,270	+				+1.1
3,414,270	+				-1.1
3,414,270	+				-1.0
3,414,271	-				+1.0
3,414,271	-				-2.7
3,414,271	-				+3.3
3,414,271	-				-0.2
3,414,271	-				+0.8
3,414,271	-				+0.4
3,414,271	-				-1.8
3,414,271	-				-2.0
3,414,271	-				+2.1
3,414,271	-				-1.6
3,414,271	-				+0.4
3,414,279	+				+0.6
3,414,279	+				-1.2
3,414,280	-				+2.7
3,414,296	+				-0.2
3,414,296	+				+1.5
3,414,299	+				+0.7
3,414,299	+				-2.8
3,414,299	+				-2.0
3,414,299	+				-0.2
3,414,299	+				-2.5
3,414,299	+				-1.5
3,414,300	-				+1.3
3,414,300	-				-1.2
3,414,300	-				+0.8
3,414,300	-				+2.3
3,414,309	+				-1.8
3,414,309	+				-0.4
3,414,309	+				-0.5
3,414,309	+				+0.8
3,414,309	+				+1.0
3,414,309	+				-3.5
3,414,309	+				+0.8
3,414,309	+				-0.2
3,414,309	+				+2.7
3,414,310	-				+1.8
3,414,310	-				-3.4
3,414,310	-				+0.6
3,414,310	-				-0.7
3,414,310	-				-0.4
3,414,310	-				-1.4
3,414,310	-				-1.4
3,414,310	-				-0.4
3,414,310	-				+2.1
3,414,312	+				-2.0
3,414,313	-				+2.3
3,414,320	+				-1.7
3,414,320	+				-0.8
3,414,320	+				+0.8
3,414,320	+				+0.3
3,414,320	+				-2.6
3,414,320	+				-0.6
3,414,320	+				+0.7
3,414,320	+				-2.1
3,414,320	+				-1.5
3,414,320	+				-3.4
3,414,320	+				+1.1
3,414,320	+				+0.2
3,414,320	+				+0.1
3,414,321	-				+2.7
3,414,321	-				-1.3
3,414,321	-				-0.7
3,414,321	-				-0.7
3,414,321	-				+0.8
3,414,321	-				-1.8
3,414,321	-				+0.6
3,414,321	-				+0.8
3,414,321	-				-2.6
3,414,362	+				+0.0
3,414,362	+				+0.9
3,414,362	+				-1.2
3,414,489	+		EFB2_03267	0.11	-2.4
3,414,541	-		EFB2_03267	0.15	+3.5
3,414,561	+		EFB2_03267	0.17	+1.4
3,414,561	+		EFB2_03267	0.17	-1.9
3,414,561	+		EFB2_03267	0.17	+0.2
3,414,561	+		EFB2_03267	0.17	+1.2
3,414,561	+		EFB2_03267	0.17	+0.4
3,414,561	+		EFB2_03267	0.17	+0.9
3,414,561	+		EFB2_03267	0.17	-1.6
3,414,561	+		EFB2_03267	0.17	-0.0
3,414,561	+		EFB2_03267	0.17	+0.4
3,414,561	+		EFB2_03267	0.17	+2.8
3,414,561	+		EFB2_03267	0.17	+1.3
3,414,561	+		EFB2_03267	0.17	+0.6
3,414,561	+		EFB2_03267	0.17	+1.0
3,414,561	+		EFB2_03267	0.17	+1.4
3,414,561	+		EFB2_03267	0.17	-1.3
3,414,561	+		EFB2_03267	0.17	-1.5
3,414,561	+		EFB2_03267	0.17	+0.8
3,414,561	+		EFB2_03267	0.17	+0.1
3,414,562	-		EFB2_03267	0.17	+0.8
3,414,562	-		EFB2_03267	0.17	-2.0
3,414,562	-		EFB2_03267	0.17	+0.6
3,414,562	-		EFB2_03267	0.17	-2.2
3,414,562	-		EFB2_03267	0.17	+1.2
3,414,562	-		EFB2_03267	0.17	+1.0
3,414,562	-		EFB2_03267	0.17	-0.8
3,414,562	-		EFB2_03267	0.17	+0.8
3,414,562	-		EFB2_03267	0.17	+2.0
3,414,562	-		EFB2_03267	0.17	+0.2
3,414,562	-		EFB2_03267	0.17	-2.9
3,414,562	-		EFB2_03267	0.17	-2.0
3,414,562	-		EFB2_03267	0.17	+1.7
3,414,562	-		EFB2_03267	0.17	+0.5
3,414,562	-		EFB2_03267	0.17	-2.4
3,414,563	+		EFB2_03267	0.17	+1.6
3,414,563	+		EFB2_03267	0.17	-1.5
3,414,564	-		EFB2_03267	0.17	+0.6
3,414,564	-		EFB2_03267	0.17	-2.0
3,414,564	-		EFB2_03267	0.17	+0.7
3,414,599	-		EFB2_03267	0.20	+0.7
3,414,645	+		EFB2_03267	0.24	+1.7
3,414,646	-		EFB2_03267	0.24	+0.4
3,414,690	+		EFB2_03267	0.27	+0.8
3,414,691	-		EFB2_03267	0.27	+2.4
3,414,691	-		EFB2_03267	0.27	-0.5
3,414,733	+		EFB2_03267	0.31	-1.0
3,414,734	-		EFB2_03267	0.31	-0.2
3,414,750	+		EFB2_03267	0.32	-0.5
3,414,750	+		EFB2_03267	0.32	-3.2
3,414,785	-		EFB2_03267	0.35	-2.4
3,414,831	+		EFB2_03267	0.39	-0.7
3,414,831	+		EFB2_03267	0.39	+1.3
3,414,831	+		EFB2_03267	0.39	-2.0
3,414,831	+		EFB2_03267	0.39	-1.5
3,414,831	+		EFB2_03267	0.39	+0.8
3,414,831	+		EFB2_03267	0.39	+0.3
3,414,831	+		EFB2_03267	0.39	-2.1
3,414,831	+		EFB2_03267	0.39	-2.2
3,414,831	+		EFB2_03267	0.39	-0.6
3,414,831	+		EFB2_03267	0.39	+0.8
3,414,831	+		EFB2_03267	0.39	-1.9
3,414,831	+		EFB2_03267	0.39	-1.3
3,414,831	+		EFB2_03267	0.39	-0.2
3,414,831	+		EFB2_03267	0.39	-2.0
3,414,832	-		EFB2_03267	0.39	+2.5
3,414,832	-		EFB2_03267	0.39	-0.2
3,414,832	-		EFB2_03267	0.39	-1.7
3,414,832	-		EFB2_03267	0.39	+0.4
3,414,832	-		EFB2_03267	0.39	-1.3
3,414,832	-		EFB2_03267	0.39	+0.9
3,414,832	-		EFB2_03267	0.39	+0.4
3,414,832	-		EFB2_03267	0.39	+1.7
3,414,832	-		EFB2_03267	0.39	+0.8
3,414,833	+		EFB2_03267	0.39	-0.2
3,414,834	-		EFB2_03267	0.39	+1.1
3,414,903	+		EFB2_03267	0.45	-0.7
3,414,959	+		EFB2_03267	0.50	+0.8
3,414,959	+		EFB2_03267	0.50	-1.9
3,414,960	-		EFB2_03267	0.50	+1.0
3,414,960	-		EFB2_03267	0.50	+1.4
3,415,062	+		EFB2_03267	0.58	-1.4
3,415,062	+		EFB2_03267	0.58	+0.6
3,415,062	+		EFB2_03267	0.58	+0.3
3,415,062	+		EFB2_03267	0.58	-1.0
3,415,062	+		EFB2_03267	0.58	-1.6
3,415,062	+		EFB2_03267	0.58	-0.5
3,415,063	-		EFB2_03267	0.58	+0.3
3,415,063	-		EFB2_03267	0.58	+1.0
3,415,063	-		EFB2_03267	0.58	-0.4
3,415,063	-		EFB2_03267	0.58	+2.8
3,415,063	-		EFB2_03267	0.58	+1.2
3,415,063	-		EFB2_03267	0.58	+0.8
3,415,063	-		EFB2_03267	0.58	-1.0
3,415,091	+		EFB2_03267	0.61	+1.1
3,415,091	+		EFB2_03267	0.61	-0.6
3,415,091	+		EFB2_03267	0.61	-2.2
3,415,110	+		EFB2_03267	0.62	+3.1
3,415,110	+		EFB2_03267	0.62	-0.6
3,415,111	-		EFB2_03267	0.62	+1.6
3,415,111	-		EFB2_03267	0.62	-1.2
3,415,136	+		EFB2_03267	0.64	+1.4
3,415,136	+		EFB2_03267	0.64	-3.1
3,415,136	+		EFB2_03267	0.64	-1.5
3,415,137	-		EFB2_03267	0.65	+2.3
3,415,137	-		EFB2_03267	0.65	-0.6
3,415,137	-		EFB2_03267	0.65	+1.0
3,415,137	-		EFB2_03267	0.65	+1.4
3,415,137	-		EFB2_03267	0.65	+0.6
3,415,137	-		EFB2_03267	0.65	+1.7
3,415,153	-		EFB2_03267	0.66	+0.8
3,415,296	+		EFB2_03267	0.78	-2.5
3,415,299	-		EFB2_03267	0.78	-1.2
3,415,308	+		EFB2_03267	0.79	-1.7
3,415,309	-		EFB2_03267	0.79	-0.9
3,415,315	-		EFB2_03267	0.79	+1.5
3,415,315	-		EFB2_03267	0.79	-2.5
3,415,324	-		EFB2_03267	0.80	-0.6
3,415,324	-		EFB2_03267	0.80	+0.2
3,415,324	-		EFB2_03267	0.80	+1.8
3,415,343	+		EFB2_03267	0.82	+1.3
3,415,343	+		EFB2_03267	0.82	+0.9
3,415,343	+		EFB2_03267	0.82	-0.5
3,415,343	+		EFB2_03267	0.82	+0.4
3,415,343	+		EFB2_03267	0.82	-2.1
3,415,343	+		EFB2_03267	0.82	+1.5
3,415,343	+		EFB2_03267	0.82	-0.9
3,415,343	+		EFB2_03267	0.82	+0.3
3,415,343	+		EFB2_03267	0.82	+0.9
3,415,344	-		EFB2_03267	0.82	+2.0
3,415,344	-		EFB2_03267	0.82	-2.8
3,415,344	-		EFB2_03267	0.82	-1.7
3,415,344	-		EFB2_03267	0.82	+1.0
3,415,344	-		EFB2_03267	0.82	-0.6
3,415,344	-		EFB2_03267	0.82	+0.7
3,415,344	-		EFB2_03267	0.82	+0.8
3,415,344	-		EFB2_03267	0.82	+1.1
3,415,344	-		EFB2_03267	0.82	+0.7
3,415,344	-		EFB2_03267	0.82	-0.6
3,415,344	-		EFB2_03267	0.82	-0.4
3,415,344	-		EFB2_03267	0.82	+1.6
3,415,344	-		EFB2_03267	0.82	-0.9
3,415,344	-		EFB2_03267	0.82	-3.0
3,415,344	-		EFB2_03267	0.82	-2.0
3,415,344	-		EFB2_03267	0.82	-0.6
3,415,344	-		EFB2_03267	0.82	+1.1
3,415,359	+		EFB2_03267	0.83	-2.9
3,415,413	+		EFB2_03267	0.87	-1.0
3,415,413	+		EFB2_03267	0.87	-1.8
3,415,413	+		EFB2_03267	0.87	+0.8
3,415,424	+		EFB2_03267	0.88	+1.3
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