Strain Fitness in Escherichia fergusonii Becca around EFB2_03266

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,412,571	-				-2.1
3,412,571	-				+0.5
3,412,604	-				+0.6
3,412,635	-				-3.0
3,412,637	+				+0.2
3,412,638	-				+0.8
3,412,656	-				-0.1
3,412,668	-				+0.0
3,412,688	-				-1.2
3,412,688	-				-2.9
3,412,715	+				+2.8
3,412,715	+				+1.8
3,412,715	+				-2.6
3,412,715	+				+2.7
3,412,715	+				-0.8
3,412,715	+				+1.4
3,412,715	+				-0.2
3,412,715	+				+0.1
3,412,715	+				-1.0
3,412,715	+				+2.4
3,412,715	+				-2.7
3,412,715	+				+1.2
3,412,715	+				-0.5
3,412,716	-				-0.1
3,412,716	-				-1.8
3,412,716	-				-2.7
3,412,716	-				-0.2
3,412,716	-				-1.0
3,412,716	-				-0.7
3,412,716	-				-2.3
3,412,716	-				-1.7
3,412,716	-				-2.0
3,412,716	-				+0.8
3,412,720	+				-1.2
3,412,720	+				-2.6
3,412,720	+				+2.2
3,412,720	+				+1.6
3,412,721	-				+0.7
3,412,729	+				+0.1
3,412,731	+				-2.0
3,412,731	+				-2.1
3,412,731	+				-1.3
3,412,731	+				+0.5
3,412,731	+				+0.1
3,412,731	+				-0.6
3,412,731	+				-0.9
3,412,731	+				+1.7
3,412,731	+				+0.7
3,412,731	+				-0.4
3,412,731	+				+0.2
3,412,731	+				+0.4
3,412,731	+				-2.4
3,412,731	+				-0.2
3,412,731	+				-0.7
3,412,731	+				-2.2
3,412,731	+				+1.4
3,412,731	+				-1.0
3,412,732	-				-1.4
3,412,732	-				+0.5
3,412,732	-				+0.3
3,412,732	-				+0.1
3,412,732	-				-0.5
3,412,732	-				+0.6
3,412,732	-				+0.7
3,412,732	-				-3.2
3,412,732	-				+0.8
3,412,732	-				-0.4
3,412,732	-				-0.4
3,412,732	-				-0.5
3,412,732	-				-2.6
3,412,732	-				+3.1
3,412,732	-				-0.6
3,412,732	-				-0.2
3,412,732	-				-0.2
3,412,732	-				+0.6
3,412,732	-				+0.1
3,412,732	-				-0.5
3,412,732	-				-0.3
3,412,732	-				+1.5
3,412,732	-				-2.4
3,412,735	+				+0.8
3,412,735	+				+0.5
3,412,736	-				-1.5
3,412,736	-				-2.4
3,412,736	-				-1.0
3,412,736	-				-3.0
3,412,736	-				+1.2
3,412,736	-				+1.8
3,412,736	-				+0.2
3,412,736	-				-3.2
3,412,736	-				+3.0
3,412,736	-				-2.7
3,412,736	-				+0.2
3,412,746	+				+4.3
3,412,746	+				+0.7
3,412,753	+				-0.9
3,412,753	+				-0.6
3,412,754	-				+0.9
3,412,757	+				+0.7
3,412,757	+				-2.5
3,412,758	-				-1.7
3,412,758	-				-1.0
3,412,771	+				-2.7
3,412,772	-				+1.0
3,412,781	+				-2.6
3,412,781	+				-3.1
3,412,781	+				+0.4
3,412,782	-				-2.4
3,412,808	+				+0.9
3,412,808	+				+0.3
3,412,809	-				+0.1
3,412,809	-				-1.8
3,412,809	-				+0.0
3,412,825	-				+1.1
3,412,825	-				+0.8
3,412,833	+				+0.1
3,412,834	-				+0.9
3,412,834	-				+1.0
3,412,845	+				+0.3
3,412,846	-				+1.5
3,412,865	+				-2.7
3,412,879	+				-1.8
3,412,879	+				+0.0
3,412,879	+				+1.8
3,412,879	+				+0.0
3,412,880	-				+1.8
3,412,880	-				+1.3
3,412,901	+				-2.8
3,412,901	+				+0.8
3,412,901	+				+1.9
3,412,901	+				-0.4
3,412,901	+				-1.1
3,412,902	-				+2.1
3,412,902	-				-1.2
3,412,902	-				+0.8
3,412,902	-				+0.4
3,412,902	-				+1.1
3,412,927	+				-0.2
3,412,937	+				-4.0
3,412,938	-				+0.3
3,412,938	-				-0.0
3,412,940	+				-2.3
3,412,941	-				-0.7
3,412,989	-		EFB2_03265	0.15	+1.5
3,412,994	+		EFB2_03265	0.15	-0.4
3,413,032	+		EFB2_03265	0.22	-1.0
3,413,032	+		EFB2_03265	0.22	+0.6
3,413,032	+		EFB2_03265	0.22	+2.3
3,413,032	+		EFB2_03265	0.22	+1.1
3,413,051	+		EFB2_03265	0.25	+0.7
3,413,052	-		EFB2_03265	0.25	+0.6
3,413,074	+		EFB2_03265	0.29	-1.3
3,413,163	-		EFB2_03265	0.44	+0.8
3,413,169	+		EFB2_03265	0.45	-0.1
3,413,171	+		EFB2_03265	0.45	-2.7
3,413,171	+		EFB2_03265	0.45	-1.8
3,413,171	+		EFB2_03265	0.45	-0.8
3,413,171	+		EFB2_03265	0.45	-2.5
3,413,171	+		EFB2_03265	0.45	-0.6
3,413,172	-		EFB2_03265	0.45	+0.2
3,413,172	-		EFB2_03265	0.45	-1.8
3,413,172	-		EFB2_03265	0.45	+1.6
3,413,172	-		EFB2_03265	0.45	+1.4
3,413,252	-		EFB2_03265	0.59	+1.4
3,413,285	-		EFB2_03265	0.64	+0.1
3,413,285	-		EFB2_03265	0.64	+1.0
3,413,322	+		EFB2_03265	0.70	-0.4
3,413,322	+		EFB2_03265	0.70	-2.0
3,413,348	+		EFB2_03265	0.75	+1.5
3,413,372	+		EFB2_03265	0.79	+0.5
3,413,372	+		EFB2_03265	0.79	-0.4
3,413,373	-		EFB2_03265	0.79	+0.7
3,413,373	-		EFB2_03265	0.79	+0.1
3,413,373	-		EFB2_03265	0.79	+1.8
3,413,399	+		EFB2_03265	0.83	+0.5
3,413,399	+		EFB2_03265	0.83	-2.1
3,413,399	+		EFB2_03265	0.83	-0.2
3,413,399	+		EFB2_03265	0.83	+0.1
3,413,400	-		EFB2_03265	0.83	+0.8
3,413,400	-		EFB2_03265	0.83	-0.1
3,413,420	+		EFB2_03265	0.87	+1.3
3,413,420	+		EFB2_03265	0.87	+0.7
3,413,421	-		EFB2_03265	0.87	-1.5
3,413,421	-		EFB2_03265	0.87	-0.6
3,413,421	-		EFB2_03265	0.87	-0.9
3,413,428	-		EFB2_03265	0.88	-0.9
3,413,428	-		EFB2_03265	0.88	+0.6
3,413,506	+				+0.9
3,413,515	+				-1.6
3,413,516	-				-2.3
3,413,516	-				-0.3
3,413,516	-				+0.4
3,413,518	+				+0.1
3,413,518	+				-0.7
3,413,518	+				-0.9
3,413,519	-				+0.1
3,413,519	-				+2.1
3,413,519	-				+2.3
3,413,538	+				+0.6
3,413,538	+				+1.8
3,413,538	+				+0.8
3,413,539	-				+1.4
3,413,539	-				-2.2
3,413,542	+				-0.1
3,413,542	+				-0.1
3,413,542	+				+0.4
3,413,542	+				-1.6
3,413,542	+				-1.3
3,413,542	+				+0.6
3,413,542	+				+0.6
3,413,542	+				-0.9
3,413,543	-				-2.2
3,413,543	-				+0.2
3,413,543	-				+1.3
3,413,543	-				-3.3
3,413,543	-				-1.5
3,413,543	-				-2.0
3,413,543	-				-1.4
3,413,543	-				-0.6
3,413,543	-				+1.1
3,413,602	+				-1.4
3,413,602	+				+1.1
3,413,603	-				-1.7
3,413,615	+				+0.1
3,413,615	+				+0.1
3,413,615	+				+2.8
3,413,615	+				-0.2
3,413,615	+				-0.8
3,413,616	-				-1.7
3,413,616	-				-1.2
3,413,616	-				-0.4
3,413,616	-				+1.4
3,413,616	-				+2.9
3,413,620	+				+0.1
3,413,620	+				-1.5
3,413,620	+				+0.9
3,413,620	+				-0.8
3,413,620	+				+0.9
3,413,620	+				+0.5
3,413,620	+				-0.9
3,413,620	+				-2.7
3,413,620	+				-3.2
3,413,620	+				+0.2
3,413,621	-				-2.1
3,413,621	-				+1.8
3,413,627	+				-0.6
3,413,627	+				+1.6
3,413,627	+				+1.2
3,413,627	+				-0.1
3,413,718	+		EFB2_03266	0.21	-2.7
3,413,718	+		EFB2_03266	0.21	-0.2
3,413,718	+		EFB2_03266	0.21	-0.9
3,413,720	+		EFB2_03266	0.22	-1.4
3,413,720	+		EFB2_03266	0.22	-1.9
3,413,720	+		EFB2_03266	0.22	+1.6
3,413,720	+		EFB2_03266	0.22	-1.3
3,413,720	+		EFB2_03266	0.22	+0.7
3,413,720	+		EFB2_03266	0.22	-0.6
3,413,720	+		EFB2_03266	0.22	-1.2
3,413,721	-		EFB2_03266	0.22	-2.4
3,413,721	-		EFB2_03266	0.22	-2.3
3,413,751	+		EFB2_03266	0.26	-2.3
3,413,759	-		EFB2_03266	0.27	-2.4
3,413,759	-		EFB2_03266	0.27	-1.6
3,413,824	+		EFB2_03266	0.35	+1.1
3,413,824	+		EFB2_03266	0.35	-2.5
3,413,824	+		EFB2_03266	0.35	+1.0
3,413,824	+		EFB2_03266	0.35	-0.1
3,413,824	+		EFB2_03266	0.35	-1.7
3,413,824	+		EFB2_03266	0.35	+2.2
3,413,825	-		EFB2_03266	0.35	-2.0
3,413,825	-		EFB2_03266	0.35	-2.9
3,413,825	-		EFB2_03266	0.35	+0.2
3,413,876	+		EFB2_03266	0.42	-2.7
3,413,877	-		EFB2_03266	0.42	+1.9
3,413,906	+		EFB2_03266	0.46	+0.7
3,413,920	-		EFB2_03266	0.48	-1.6
3,413,926	+		EFB2_03266	0.49	-3.5
3,413,926	+		EFB2_03266	0.49	+1.2
3,413,930	+		EFB2_03266	0.49	-0.4
3,413,930	+		EFB2_03266	0.49	+0.2
3,413,930	+		EFB2_03266	0.49	-1.4
3,413,930	+		EFB2_03266	0.49	-2.7
3,413,930	+		EFB2_03266	0.49	+2.5
3,413,930	+		EFB2_03266	0.49	-2.6
3,413,931	-		EFB2_03266	0.49	+1.1
3,413,931	-		EFB2_03266	0.49	-0.7
3,413,931	-		EFB2_03266	0.49	-0.6
3,414,066	+		EFB2_03266	0.67	+0.6
3,414,101	+		EFB2_03266	0.72	+0.1
3,414,101	+		EFB2_03266	0.72	+0.9
3,414,102	-		EFB2_03266	0.72	+0.8
3,414,110	+		EFB2_03266	0.73	-0.6
3,414,111	-		EFB2_03266	0.73	+0.8
3,414,130	+		EFB2_03266	0.76	-0.0
3,414,185	+		EFB2_03266	0.83	-0.1
3,414,186	-		EFB2_03266	0.83	-2.7
3,414,186	-		EFB2_03266	0.83	-1.7
3,414,236	+		EFB2_03266	0.90	+1.5
3,414,236	+		EFB2_03266	0.90	+0.9
3,414,237	-		EFB2_03266	0.90	+1.4
3,414,270	+				-0.9
3,414,270	+				+1.3
3,414,270	+				-1.0
3,414,270	+				-1.5
3,414,270	+				+0.4
3,414,270	+				-0.0
3,414,270	+				+0.8
3,414,270	+				+0.3
3,414,270	+				-2.1
3,414,270	+				-0.1
3,414,270	+				+1.7
3,414,270	+				+1.1
3,414,270	+				-1.1
3,414,270	+				-1.0
3,414,271	-				+1.0
3,414,271	-				-2.7
3,414,271	-				+3.3
3,414,271	-				-0.2
3,414,271	-				+0.8
3,414,271	-				+0.4
3,414,271	-				-1.8
3,414,271	-				-2.0
3,414,271	-				+2.1
3,414,271	-				-1.6
3,414,271	-				+0.4
3,414,279	+				+0.6
3,414,279	+				-1.2
3,414,280	-				+2.7
3,414,296	+				-0.2
3,414,296	+				+1.5
3,414,299	+				+0.7
3,414,299	+				-2.8
3,414,299	+				-2.0
3,414,299	+				-0.2
3,414,299	+				-2.5
3,414,299	+				-1.5
3,414,300	-				+1.3
3,414,300	-				-1.2
3,414,300	-				+0.8
3,414,300	-				+2.3
3,414,309	+				-1.8
3,414,309	+				-0.4
3,414,309	+				-0.5
3,414,309	+				+0.8
3,414,309	+				+1.0
3,414,309	+				-3.5
3,414,309	+				+0.8
3,414,309	+				-0.2
3,414,309	+				+2.7
3,414,310	-				+1.8
3,414,310	-				-3.4
3,414,310	-				+0.6
3,414,310	-				-0.7
3,414,310	-				-0.4
3,414,310	-				-1.4
3,414,310	-				-1.4
3,414,310	-				-0.4
3,414,310	-				+2.1
3,414,312	+				-2.0
3,414,313	-				+2.3
3,414,320	+				-1.7
3,414,320	+				-0.8
3,414,320	+				+0.8
3,414,320	+				+0.3
3,414,320	+				-2.6
3,414,320	+				-0.6
3,414,320	+				+0.7
3,414,320	+				-2.1
3,414,320	+				-1.5
3,414,320	+				-3.4
3,414,320	+				+1.1
3,414,320	+				+0.2
3,414,320	+				+0.1
3,414,321	-				+2.7
3,414,321	-				-1.3
3,414,321	-				-0.7
3,414,321	-				-0.7
3,414,321	-				+0.8
3,414,321	-				-1.8
3,414,321	-				+0.6
3,414,321	-				+0.8
3,414,321	-				-2.6
3,414,362	+				+0.0
3,414,362	+				+0.9
3,414,362	+				-1.2
3,414,489	+		EFB2_03267	0.11	-2.4
3,414,541	-		EFB2_03267	0.15	+3.5
3,414,561	+		EFB2_03267	0.17	+1.4
3,414,561	+		EFB2_03267	0.17	-1.9
3,414,561	+		EFB2_03267	0.17	+0.2
3,414,561	+		EFB2_03267	0.17	+1.2
3,414,561	+		EFB2_03267	0.17	+0.4
3,414,561	+		EFB2_03267	0.17	+0.9
3,414,561	+		EFB2_03267	0.17	-1.6
3,414,561	+		EFB2_03267	0.17	-0.0
3,414,561	+		EFB2_03267	0.17	+0.4
3,414,561	+		EFB2_03267	0.17	+2.8
3,414,561	+		EFB2_03267	0.17	+1.3
3,414,561	+		EFB2_03267	0.17	+0.6
3,414,561	+		EFB2_03267	0.17	+1.0
3,414,561	+		EFB2_03267	0.17	+1.4
3,414,561	+		EFB2_03267	0.17	-1.3
3,414,561	+		EFB2_03267	0.17	-1.5
3,414,561	+		EFB2_03267	0.17	+0.8
3,414,561	+		EFB2_03267	0.17	+0.1
3,414,562	-		EFB2_03267	0.17	+0.8
3,414,562	-		EFB2_03267	0.17	-2.0
3,414,562	-		EFB2_03267	0.17	+0.6
3,414,562	-		EFB2_03267	0.17	-2.2
3,414,562	-		EFB2_03267	0.17	+1.2
3,414,562	-		EFB2_03267	0.17	+1.0
3,414,562	-		EFB2_03267	0.17	-0.8
3,414,562	-		EFB2_03267	0.17	+0.8
3,414,562	-		EFB2_03267	0.17	+2.0
3,414,562	-		EFB2_03267	0.17	+0.2
3,414,562	-		EFB2_03267	0.17	-2.9
3,414,562	-		EFB2_03267	0.17	-2.0
3,414,562	-		EFB2_03267	0.17	+1.7
3,414,562	-		EFB2_03267	0.17	+0.5
3,414,562	-		EFB2_03267	0.17	-2.4
3,414,563	+		EFB2_03267	0.17	+1.6
3,414,563	+		EFB2_03267	0.17	-1.5
3,414,564	-		EFB2_03267	0.17	+0.6
3,414,564	-		EFB2_03267	0.17	-2.0
3,414,564	-		EFB2_03267	0.17	+0.7
3,414,599	-		EFB2_03267	0.20	+0.7
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