Strain Fitness in Escherichia fergusonii Becca around EFB2_02926

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
3,061,173	-		EFB2_02925	0.62	-0.1
3,061,307	-		EFB2_02925	0.71	-0.3
3,061,343	+		EFB2_02925	0.74	-0.1
3,061,399	-		EFB2_02925	0.77	+0.5
3,061,438	+		EFB2_02925	0.80	-3.0
3,061,438	+		EFB2_02925	0.80	+0.5
3,061,450	+		EFB2_02925	0.81	-1.8
3,061,450	+		EFB2_02925	0.81	+0.8
3,061,450	+		EFB2_02925	0.81	-0.9
3,061,451	-		EFB2_02925	0.81	-0.7
3,061,451	-		EFB2_02925	0.81	+0.1
3,061,489	-		EFB2_02925	0.83	-1.8
3,061,510	+		EFB2_02925	0.85	-1.2
3,061,510	+		EFB2_02925	0.85	-1.2
3,061,510	+		EFB2_02925	0.85	+0.5
3,061,510	+		EFB2_02925	0.85	+0.9
3,061,510	+		EFB2_02925	0.85	-1.8
3,061,510	+		EFB2_02925	0.85	+4.3
3,061,511	-		EFB2_02925	0.85	+2.4
3,061,511	-		EFB2_02925	0.85	+1.0
3,061,511	-		EFB2_02925	0.85	-1.1
3,061,511	-		EFB2_02925	0.85	-1.3
3,061,511	-		EFB2_02925	0.85	+1.2
3,061,511	-		EFB2_02925	0.85	-0.4
3,061,511	-		EFB2_02925	0.85	+0.9
3,061,511	-		EFB2_02925	0.85	-1.7
3,061,511	-		EFB2_02925	0.85	+0.2
3,061,511	-		EFB2_02925	0.85	-0.5
3,061,514	+		EFB2_02925	0.85	+0.5
3,061,515	-		EFB2_02925	0.85	+1.7
3,061,515	-		EFB2_02925	0.85	-1.9
3,061,515	-		EFB2_02925	0.85	-1.7
3,061,515	-		EFB2_02925	0.85	+1.6
3,061,515	-		EFB2_02925	0.85	+1.7
3,061,515	-		EFB2_02925	0.85	-0.3
3,061,515	-		EFB2_02925	0.85	+1.2
3,061,515	-		EFB2_02925	0.85	-1.1
3,061,525	+		EFB2_02925	0.86	-1.5
3,061,526	-		EFB2_02925	0.86	-2.5
3,061,565	-		EFB2_02925	0.88	-0.9
3,061,565	-		EFB2_02925	0.88	-3.2
3,061,597	+				-1.1
3,061,597	+				-0.7
3,061,598	-				-1.1
3,061,598	-				-2.3
3,061,606	+				+0.5
3,061,607	-				-0.8
3,061,655	-				-1.7
3,061,655	-				-1.3
3,061,655	-				+1.2
3,061,701	-				+1.5
3,061,701	-				+0.3
3,061,724	+				+1.5
3,061,724	+				+1.8
3,061,724	+				+0.9
3,061,724	+				+2.3
3,061,724	+				-0.9
3,061,724	+				-1.8
3,061,724	+				+0.5
3,061,724	+				-1.9
3,061,725	-				+0.5
3,061,725	-				-2.2
3,061,725	-				+0.5
3,061,725	-				+2.5
3,061,725	-				+2.0
3,061,725	-				+0.3
3,061,725	-				+0.9
3,061,725	-				+0.5
3,061,725	-				-1.6
3,061,725	-				+0.2
3,061,725	-				+1.1
3,061,725	-				-2.8
3,061,725	-				+2.2
3,061,725	-				+1.9
3,061,725	-				+1.5
3,061,725	-				-0.3
3,061,725	-				-1.7
3,061,725	-				+2.5
3,061,725	-				-1.7
3,061,725	-				+0.2
3,061,725	-				+0.5
3,061,725	-				-1.2
3,061,725	-				+1.4
3,061,725	-				-0.3
3,061,725	-				+1.4
3,061,725	-				-2.0
3,061,725	-				-0.3
3,061,725	-				-0.5
3,061,726	+				+0.5
3,061,726	+				-1.5
3,061,726	+				+1.5
3,061,727	-				-1.2
3,061,727	-				-0.2
3,061,727	-				-2.5
3,061,727	-				+0.6
3,061,727	-				+0.3
3,061,741	-				-1.4
3,061,777	-				-1.4
3,061,781	+				+3.1
3,061,781	+				+0.2
3,061,781	+				-0.9
3,061,782	-				+0.8
3,061,782	-				+0.3
3,061,790	+				-0.3
3,061,790	+				+1.9
3,061,791	-				+1.8
3,061,794	+				-1.7
3,061,794	+				-2.1
3,061,794	+				+1.5
3,061,794	+				+2.5
3,061,795	-				+1.0
3,061,795	-				+0.2
3,061,795	-				-3.8
3,061,797	+				+2.0
3,061,797	+				-0.5
3,061,798	-				+0.6
3,061,798	-				+1.4
3,061,798	-				+0.1
3,061,798	-				-1.2
3,061,821	+				+1.6
3,061,821	+				-2.7
3,061,821	+				-1.5
3,061,821	+				+0.7
3,061,821	+				-2.5
3,061,822	-				+0.2
3,061,822	-				+1.4
3,061,822	-				-0.2
3,061,823	+				-0.1
3,061,823	+				-0.8
3,061,824	-				-0.7
3,061,824	-				+0.8
3,061,836	+				-1.9
3,061,841	+				+1.2
3,061,848	+				+0.8
3,061,905	+				-1.3
3,061,906	-				-0.3
3,061,906	-				-2.0
3,061,906	-				-0.5
3,061,995	+				-0.4
3,061,995	+				-0.5
3,062,007	+				+0.4
3,062,007	+				-1.5
3,062,007	+				+1.6
3,062,008	-				-2.2
3,062,029	-				+0.3
3,062,046	+				-2.2
3,062,046	+				+1.1
3,062,046	+				+0.9
3,062,046	+				-0.2
3,062,046	+				+1.1
3,062,046	+				-1.6
3,062,046	+				-0.3
3,062,046	+				+0.7
3,062,046	+				-0.2
3,062,046	+				+1.9
3,062,046	+				+1.2
3,062,047	-				+0.9
3,062,047	-				-0.4
3,062,047	-				-1.4
3,062,047	-				+1.8
3,062,047	-				-0.1
3,062,047	-				+0.7
3,062,047	-				+0.2
3,062,047	-				+0.6
3,062,047	-				-1.9
3,062,047	-				+0.7
3,062,047	-				+0.8
3,062,052	+				+1.6
3,062,052	+				-1.0
3,062,052	+				-0.2
3,062,052	+				-2.0
3,062,052	+				-2.1
3,062,052	+				+0.3
3,062,053	-				-1.4
3,062,053	-				+0.5
3,062,053	-				-1.8
3,062,053	-				+1.1
3,062,111	+				-0.0
3,062,111	+				+0.5
3,062,119	+				-0.1
3,062,120	-				+0.4
3,062,133	+				-0.2
3,062,133	+				-3.2
3,062,153	+				-0.3
3,062,153	+				+0.2
3,062,153	+				+0.4
3,062,153	+				+1.1
3,062,153	+				-0.5
3,062,154	-				-1.7
3,062,154	-				-0.8
3,062,154	-				+1.0
3,062,157	+				-0.5
3,062,158	-				+0.2
3,062,158	-				-1.1
3,062,161	+				+1.0
3,062,163	+				+0.1
3,062,163	+				+1.1
3,062,163	+				+0.5
3,062,163	+				-0.2
3,062,163	+				+0.2
3,062,163	+				+0.3
3,062,163	+				+0.2
3,062,163	+				+0.6
3,062,163	+				+0.2
3,062,163	+				-0.6
3,062,163	+				-2.1
3,062,163	+				+0.6
3,062,163	+				-2.3
3,062,163	+				+2.1
3,062,163	+				-1.3
3,062,163	+				-0.2
3,062,163	+				-0.0
3,062,163	+				-2.1
3,062,163	+				+0.1
3,062,163	+				+1.2
3,062,163	+				+0.4
3,062,163	+				+1.4
3,062,163	+				-0.1
3,062,163	+				-4.4
3,062,163	+				-0.8
3,062,163	+				-1.1
3,062,163	+				-1.8
3,062,163	+				-1.5
3,062,164	-				-1.8
3,062,164	-				-1.9
3,062,164	-				+1.0
3,062,164	-				+0.5
3,062,164	-				-2.3
3,062,164	-				-2.1
3,062,164	-				+1.5
3,062,164	-				-2.1
3,062,164	-				+0.7
3,062,164	-				+1.8
3,062,164	-				-0.0
3,062,164	-				-1.4
3,062,164	-				+0.0
3,062,164	-				+1.4
3,062,164	-				-2.1
3,062,164	-				-2.2
3,062,164	-				+0.2
3,062,164	-				+0.5
3,062,164	-				-0.3
3,062,164	-				+0.5
3,062,165	+				+1.4
3,062,165	+				+0.5
3,062,165	+				+0.2
3,062,165	+				-3.2
3,062,165	+				-0.8
3,062,165	+				-0.9
3,062,165	+				-1.0
3,062,165	+				+1.4
3,062,165	+				-0.8
3,062,165	+				+2.5
3,062,165	+				-2.3
3,062,165	+				+0.4
3,062,165	+				-1.1
3,062,165	+				+0.9
3,062,165	+				-2.1
3,062,165	+				-1.3
3,062,165	+				+0.6
3,062,165	+				-3.0
3,062,165	+				-0.2
3,062,165	+				-1.9
3,062,166	-				+2.8
3,062,166	-				-1.7
3,062,166	-				-0.4
3,062,166	-				+0.1
3,062,166	-				-0.2
3,062,166	-				+2.7
3,062,166	-				-1.1
3,062,166	-				+0.6
3,062,166	-				+0.6
3,062,166	-				+1.7
3,062,166	-				+1.5
3,062,166	-				+1.3
3,062,166	-				-2.1
3,062,166	-				+0.2
3,062,166	-				+0.2
3,062,166	-				-0.3
3,062,166	-				-2.8
3,062,166	-				+0.1
3,062,166	-				-1.8
3,062,166	-				-1.3
3,062,166	-				-1.7
3,062,166	-				+1.6
3,062,166	-				+0.5
3,062,166	-				-2.8
3,062,166	-				-0.7
3,062,166	-				-1.5
3,062,166	-				+0.4
3,062,193	+				+0.5
3,062,194	-				-0.0
3,062,231	-				+2.5
3,062,246	+				-0.1
3,062,246	+				+0.2
3,062,255	-				-1.0
3,062,255	-				+1.6
3,062,259	+				+0.5
3,062,259	+				-1.6
3,062,259	+				-0.2
3,062,259	+				+0.8
3,062,260	-				+0.3
3,062,260	-				+1.1
3,062,260	-				+0.2
3,062,260	-				+0.2
3,062,270	+				-0.2
3,062,270	+				-2.1
3,062,270	+				+0.9
3,062,270	+				+0.5
3,062,270	+				+0.9
3,062,270	+				-0.3
3,062,270	+				-0.7
3,062,271	-				+1.4
3,062,271	-				+2.8
3,062,271	-				-0.7
3,062,271	-				-0.6
3,062,302	+		EFB2_02926	0.12	-0.9
3,062,318	+		EFB2_02926	0.13	+0.2
3,062,319	-		EFB2_02926	0.13	-2.3
3,062,319	-		EFB2_02926	0.13	+1.0
3,062,351	-		EFB2_02926	0.16	+1.1
3,062,360	+		EFB2_02926	0.17	+1.7
3,062,361	-		EFB2_02926	0.17	+0.4
3,062,362	+		EFB2_02926	0.17	-2.6
3,062,379	+		EFB2_02926	0.18	+0.7
3,062,379	+		EFB2_02926	0.18	-2.0
3,062,380	-		EFB2_02926	0.18	-1.5
3,062,397	+		EFB2_02926	0.20	-1.2
3,062,397	+		EFB2_02926	0.20	-1.7
3,062,422	+		EFB2_02926	0.22	-2.9
3,062,422	+		EFB2_02926	0.22	-0.1
3,062,423	-		EFB2_02926	0.22	-1.4
3,062,437	+		EFB2_02926	0.23	-1.5
3,062,437	+		EFB2_02926	0.23	+0.2
3,062,438	-		EFB2_02926	0.23	-0.9
3,062,441	+		EFB2_02926	0.24	+2.8
3,062,452	+		EFB2_02926	0.25	-2.5
3,062,452	+		EFB2_02926	0.25	-0.9
3,062,452	+		EFB2_02926	0.25	+0.7
3,062,453	-		EFB2_02926	0.25	-1.9
3,062,486	+		EFB2_02926	0.28	-1.9
3,062,486	+		EFB2_02926	0.28	-1.3
3,062,487	-		EFB2_02926	0.28	-1.5
3,062,487	-		EFB2_02926	0.28	+0.7
3,062,490	-		EFB2_02926	0.28	+2.2
3,062,490	-		EFB2_02926	0.28	-2.8
3,062,490	-		EFB2_02926	0.28	+0.6
3,062,499	+		EFB2_02926	0.29	+1.6
3,062,499	+		EFB2_02926	0.29	+1.7
3,062,499	+		EFB2_02926	0.29	-0.6
3,062,499	+		EFB2_02926	0.29	+3.0
3,062,499	+		EFB2_02926	0.29	-0.1
3,062,500	-		EFB2_02926	0.29	-1.7
3,062,500	-		EFB2_02926	0.29	-1.9
3,062,500	-		EFB2_02926	0.29	+0.2
3,062,541	+		EFB2_02926	0.32	-1.1
3,062,541	+		EFB2_02926	0.32	+1.3
3,062,542	-		EFB2_02926	0.32	+1.2
3,062,542	-		EFB2_02926	0.32	+0.6
3,062,542	-		EFB2_02926	0.32	-2.8
3,062,542	-		EFB2_02926	0.32	+2.1
3,062,550	+		EFB2_02926	0.33	-1.2
3,062,550	+		EFB2_02926	0.33	+0.6
3,062,550	+		EFB2_02926	0.33	-0.6
3,062,550	+		EFB2_02926	0.33	+1.0
3,062,550	+		EFB2_02926	0.33	+1.3
3,062,550	+		EFB2_02926	0.33	+1.8
3,062,550	+		EFB2_02926	0.33	-1.3
3,062,551	-		EFB2_02926	0.33	+0.1
3,062,551	-		EFB2_02926	0.33	-1.7
3,062,551	-		EFB2_02926	0.33	+0.8
3,062,551	-		EFB2_02926	0.33	-0.7
3,062,551	-		EFB2_02926	0.33	+2.0
3,062,551	-		EFB2_02926	0.33	-0.0
3,062,551	-		EFB2_02926	0.33	-1.2
3,062,551	-		EFB2_02926	0.33	+3.8
3,062,551	-		EFB2_02926	0.33	+0.2
3,062,552	+		EFB2_02926	0.33	+0.3
3,062,553	-		EFB2_02926	0.33	+0.3
3,062,553	-		EFB2_02926	0.33	+1.1
3,062,555	+		EFB2_02926	0.34	-2.7
3,062,555	+		EFB2_02926	0.34	+2.2
3,062,555	+		EFB2_02926	0.34	+1.1
3,062,555	+		EFB2_02926	0.34	-2.2
3,062,555	+		EFB2_02926	0.34	-0.1
3,062,555	+		EFB2_02926	0.34	+1.4
3,062,555	+		EFB2_02926	0.34	+2.7
3,062,555	+		EFB2_02926	0.34	+0.5
3,062,555	+		EFB2_02926	0.34	-1.5
3,062,555	+		EFB2_02926	0.34	+1.8
3,062,556	-		EFB2_02926	0.34	-1.2
3,062,556	-		EFB2_02926	0.34	+1.7
3,062,556	-		EFB2_02926	0.34	-1.7
3,062,556	-		EFB2_02926	0.34	-0.1
3,062,556	-		EFB2_02926	0.34	+1.2
3,062,556	-		EFB2_02926	0.34	-0.8
3,062,556	-		EFB2_02926	0.34	+2.1
3,062,556	-		EFB2_02926	0.34	+0.2
3,062,556	-		EFB2_02926	0.34	+1.2
3,062,572	+		EFB2_02926	0.35	+1.6
3,062,573	-		EFB2_02926	0.35	+0.1
3,062,573	-		EFB2_02926	0.35	+0.2
3,062,573	-		EFB2_02926	0.35	+1.5
3,062,652	-		EFB2_02926	0.42	-1.1
3,062,695	+		EFB2_02926	0.46	-1.0
3,062,702	-		EFB2_02926	0.46	-3.6
3,062,743	+		EFB2_02926	0.50	+1.9
3,062,743	+		EFB2_02926	0.50	+1.4
3,062,743	+		EFB2_02926	0.50	-3.0
3,062,743	+		EFB2_02926	0.50	-1.8
3,062,743	+		EFB2_02926	0.50	-2.2
3,062,744	-		EFB2_02926	0.50	+0.7
3,062,744	-		EFB2_02926	0.50	-1.6
3,062,767	-		EFB2_02926	0.52	+0.2
3,062,801	+		EFB2_02926	0.55	-2.0
3,062,802	-		EFB2_02926	0.55	-1.6
3,062,818	+		EFB2_02926	0.56	+0.9
3,062,818	+		EFB2_02926	0.56	+0.1
3,062,823	+		EFB2_02926	0.57	+2.0
3,062,823	+		EFB2_02926	0.57	-0.5
3,062,823	+		EFB2_02926	0.57	-1.9
3,062,838	-		EFB2_02926	0.58	-1.9
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