Strain Fitness in Escherichia fergusonii Becca around EFB2_02492

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,617,753	-				-2.2
2,617,767	+				+1.8
2,617,768	-				+0.8
2,617,798	+				-1.1
2,617,799	-				-1.7
2,617,809	+				-1.3
2,617,819	-				+1.2
2,617,842	-				-0.2
2,617,852	+				-0.2
2,617,853	-				+1.0
2,617,877	+				-0.1
2,617,877	+				-2.2
2,617,883	+				-0.6
2,617,960	+		EFB2_02491	0.15	-1.5
2,617,980	-		EFB2_02491	0.17	-0.1
2,618,002	+		EFB2_02491	0.20	-0.6
2,618,033	+		EFB2_02491	0.24	-1.5
2,618,033	+		EFB2_02491	0.24	+0.2
2,618,033	+		EFB2_02491	0.24	-0.2
2,618,078	+		EFB2_02491	0.30	+0.3
2,618,079	-		EFB2_02491	0.30	+2.4
2,618,079	-		EFB2_02491	0.30	-2.0
2,618,079	-		EFB2_02491	0.30	+1.2
2,618,095	+		EFB2_02491	0.32	+0.3
2,618,095	+		EFB2_02491	0.32	+2.0
2,618,095	+		EFB2_02491	0.32	+2.3
2,618,095	+		EFB2_02491	0.32	-1.8
2,618,096	-		EFB2_02491	0.32	+1.8
2,618,096	-		EFB2_02491	0.32	-1.3
2,618,096	-		EFB2_02491	0.32	+0.0
2,618,096	-		EFB2_02491	0.32	-0.9
2,618,101	-		EFB2_02491	0.33	+1.5
2,618,110	+		EFB2_02491	0.34	+1.9
2,618,110	+		EFB2_02491	0.34	+2.8
2,618,110	+		EFB2_02491	0.34	+1.5
2,618,110	+		EFB2_02491	0.34	+2.3
2,618,110	+		EFB2_02491	0.34	+0.4
2,618,111	-		EFB2_02491	0.34	+1.6
2,618,111	-		EFB2_02491	0.34	+2.4
2,618,111	-		EFB2_02491	0.34	+0.2
2,618,111	-		EFB2_02491	0.34	+0.2
2,618,114	+		EFB2_02491	0.34	+2.8
2,618,115	-		EFB2_02491	0.34	-2.1
2,618,115	-		EFB2_02491	0.34	-1.6
2,618,128	+		EFB2_02491	0.36	-0.6
2,618,129	-		EFB2_02491	0.36	+1.2
2,618,139	-		EFB2_02491	0.38	-0.7
2,618,177	-		EFB2_02491	0.42	+0.4
2,618,192	+		EFB2_02491	0.44	+0.9
2,618,193	-		EFB2_02491	0.44	-0.4
2,618,207	+		EFB2_02491	0.46	-1.9
2,618,207	+		EFB2_02491	0.46	+1.2
2,618,207	+		EFB2_02491	0.46	+2.0
2,618,207	+		EFB2_02491	0.46	+1.2
2,618,207	+		EFB2_02491	0.46	+1.2
2,618,207	+		EFB2_02491	0.46	-0.1
2,618,208	-		EFB2_02491	0.46	+0.4
2,618,208	-		EFB2_02491	0.46	+4.5
2,618,208	-		EFB2_02491	0.46	-0.1
2,618,264	+		EFB2_02491	0.54	+0.2
2,618,264	+		EFB2_02491	0.54	+1.8
2,618,268	+		EFB2_02491	0.54	-0.1
2,618,268	+		EFB2_02491	0.54	+0.4
2,618,268	+		EFB2_02491	0.54	-0.5
2,618,268	+		EFB2_02491	0.54	+4.0
2,618,268	+		EFB2_02491	0.54	-0.4
2,618,268	+		EFB2_02491	0.54	+2.8
2,618,268	+		EFB2_02491	0.54	-3.2
2,618,268	+		EFB2_02491	0.54	+1.8
2,618,268	+		EFB2_02491	0.54	-2.4
2,618,268	+		EFB2_02491	0.54	-2.2
2,618,268	+		EFB2_02491	0.54	+1.2
2,618,268	+		EFB2_02491	0.54	+0.6
2,618,268	+		EFB2_02491	0.54	-1.7
2,618,268	+		EFB2_02491	0.54	-1.6
2,618,268	+		EFB2_02491	0.54	-0.8
2,618,268	+		EFB2_02491	0.54	+0.4
2,618,268	+		EFB2_02491	0.54	+0.1
2,618,269	-		EFB2_02491	0.54	-1.8
2,618,269	-		EFB2_02491	0.54	+2.0
2,618,269	-		EFB2_02491	0.54	-1.0
2,618,269	-		EFB2_02491	0.54	-0.2
2,618,269	-		EFB2_02491	0.54	-2.5
2,618,269	-		EFB2_02491	0.54	-1.0
2,618,269	-		EFB2_02491	0.54	-0.8
2,618,269	-		EFB2_02491	0.54	-0.7
2,618,269	-		EFB2_02491	0.54	+1.3
2,618,269	-		EFB2_02491	0.54	+1.7
2,618,269	-		EFB2_02491	0.54	+0.2
2,618,274	-		EFB2_02491	0.55	+0.2
2,618,298	+		EFB2_02491	0.58	-1.1
2,618,298	+		EFB2_02491	0.58	-0.6
2,618,299	-		EFB2_02491	0.58	-2.5
2,618,299	-		EFB2_02491	0.58	-0.2
2,618,299	-		EFB2_02491	0.58	-1.9
2,618,376	-		EFB2_02491	0.68	-1.2
2,618,376	-		EFB2_02491	0.68	-0.8
2,618,376	-		EFB2_02491	0.68	+1.9
2,618,408	-		EFB2_02491	0.72	-0.1
2,618,408	-		EFB2_02491	0.72	-0.5
2,618,408	-		EFB2_02491	0.72	+1.8
2,618,549	-				+0.8
2,618,589	-				+1.5
2,618,654	+				-1.1
2,618,664	+				-0.4
2,618,665	-				+0.1
2,618,665	-				+3.6
2,618,672	+				-0.2
2,618,701	-				-0.1
2,618,728	-				+0.4
2,618,766	+		EFB2_02492	0.11	+0.6
2,618,778	+		EFB2_02492	0.20	+0.4
2,618,804	-		EFB2_02492	0.41	+3.2
2,618,865	+				+2.2
2,618,866	-				-1.5
2,618,926	+				-2.6
2,618,926	+				-0.9
2,618,926	+				+0.8
2,618,927	-				-1.4
2,618,927	-				+0.2
2,618,927	-				+1.1
2,618,927	-				-1.3
2,618,927	-				-1.2
2,618,927	-				-1.2
2,618,927	-				-1.6
2,619,029	-				-0.9
2,619,034	+				-0.2
2,619,035	-				+0.5
2,619,038	+				-0.4
2,619,038	+				+1.2
2,619,039	-				+1.2
2,619,056	-				-0.2
2,619,056	-				-1.6
2,619,061	-				-0.3
2,619,066	+				-2.1
2,619,066	+				+3.6
2,619,105	-				+0.2
2,619,129	+				-0.9
2,619,130	-				-0.7
2,619,188	+				-0.8
2,619,189	-				+1.2
2,619,212	+				+0.1
2,619,227	+				-0.2
2,619,250	+				-0.7
2,619,347	+				+1.5
2,619,377	+				+0.1
2,619,381	+				+1.0
2,619,381	+				+1.7
2,619,504	+		EFB2_02493	0.18	+0.8
2,619,504	+		EFB2_02493	0.18	-0.6
2,619,516	+		EFB2_02493	0.20	-0.9
2,619,517	-		EFB2_02493	0.20	-0.8
2,619,539	+		EFB2_02493	0.24	+1.0
2,619,539	+		EFB2_02493	0.24	+0.2
2,619,539	+		EFB2_02493	0.24	+0.3
2,619,539	+		EFB2_02493	0.24	-0.1
2,619,539	+		EFB2_02493	0.24	-0.9
2,619,654	+		EFB2_02493	0.45	-1.1
2,619,676	-		EFB2_02493	0.48	+1.2
2,619,714	+		EFB2_02493	0.55	-3.4
2,619,717	+		EFB2_02493	0.56	-1.1
2,619,717	+		EFB2_02493	0.56	+0.8
2,619,717	+		EFB2_02493	0.56	-1.5
2,619,717	+		EFB2_02493	0.56	+1.8
2,619,717	+		EFB2_02493	0.56	-2.6
2,619,717	+		EFB2_02493	0.56	+1.8
2,619,717	+		EFB2_02493	0.56	-0.8
2,619,717	+		EFB2_02493	0.56	-1.2
2,619,717	+		EFB2_02493	0.56	+0.4
2,619,717	+		EFB2_02493	0.56	+0.9
2,619,717	+		EFB2_02493	0.56	+1.8
2,619,717	+		EFB2_02493	0.56	-2.5
2,619,718	-		EFB2_02493	0.56	-1.4
2,619,718	-		EFB2_02493	0.56	-0.6
2,619,730	-		EFB2_02493	0.58	+3.0
2,619,815	+		EFB2_02493	0.73	-2.5
2,619,815	+		EFB2_02493	0.73	+1.7
2,619,815	+		EFB2_02493	0.73	-0.3
2,619,815	+		EFB2_02493	0.73	-2.3
2,619,815	+		EFB2_02493	0.73	-1.5
2,619,815	+		EFB2_02493	0.73	-1.3
2,619,815	+		EFB2_02493	0.73	-0.7
2,619,816	-		EFB2_02493	0.73	-0.2
2,619,816	-		EFB2_02493	0.73	+1.5
2,619,816	-		EFB2_02493	0.73	-1.3
2,619,816	-		EFB2_02493	0.73	+2.2
2,619,818	+		EFB2_02493	0.74	-3.0
2,619,818	+		EFB2_02493	0.74	-1.2
2,619,818	+		EFB2_02493	0.74	+0.7
2,619,818	+		EFB2_02493	0.74	-1.4
2,619,818	+		EFB2_02493	0.74	+0.0
2,619,818	+		EFB2_02493	0.74	+0.2
2,619,818	+		EFB2_02493	0.74	-0.8
2,619,818	+		EFB2_02493	0.74	-0.2
2,619,818	+		EFB2_02493	0.74	+0.6
2,619,819	-		EFB2_02493	0.74	+0.2
2,619,819	-		EFB2_02493	0.74	-1.9
2,619,819	-		EFB2_02493	0.74	-0.2
2,619,819	-		EFB2_02493	0.74	-0.2
2,619,821	+		EFB2_02493	0.74	+0.5
2,619,821	+		EFB2_02493	0.74	+1.0
2,619,821	+		EFB2_02493	0.74	+2.1
2,619,873	+		EFB2_02493	0.83	+0.4
2,619,873	+		EFB2_02493	0.83	-1.9
2,619,874	-		EFB2_02493	0.84	-0.9
2,619,875	+		EFB2_02493	0.84	-1.7
2,619,875	+		EFB2_02493	0.84	+1.2
2,619,875	+		EFB2_02493	0.84	-1.6