Strain Fitness in Escherichia fergusonii Becca around EFB2_01917

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
2,057,491	+		EFB2_01916	0.32	+2.1
2,057,491	+		EFB2_01916	0.32	-2.5
2,057,491	+		EFB2_01916	0.32	-2.0
2,057,491	+		EFB2_01916	0.32	-1.1
2,057,492	-		EFB2_01916	0.32	-2.9
2,057,492	-		EFB2_01916	0.32	-0.7
2,057,492	-		EFB2_01916	0.32	-1.2
2,057,492	-		EFB2_01916	0.32	-0.8
2,057,492	-		EFB2_01916	0.32	+2.3
2,057,492	-		EFB2_01916	0.32	-1.1
2,057,492	-		EFB2_01916	0.32	-1.7
2,057,492	-		EFB2_01916	0.32	+1.5
2,057,492	-		EFB2_01916	0.32	+2.1
2,057,492	-		EFB2_01916	0.32	+0.4
2,057,492	-		EFB2_01916	0.32	-3.1
2,057,492	-		EFB2_01916	0.32	+1.7
2,057,494	+		EFB2_01916	0.32	-0.9
2,057,494	+		EFB2_01916	0.32	-0.1
2,057,494	+		EFB2_01916	0.32	-3.3
2,057,495	-		EFB2_01916	0.32	-1.3
2,057,495	-		EFB2_01916	0.32	+2.5
2,057,495	-		EFB2_01916	0.32	+0.6
2,057,495	-		EFB2_01916	0.32	+0.6
2,057,495	-		EFB2_01916	0.32	+0.5
2,057,609	+		EFB2_01916	0.40	-0.1
2,057,613	+		EFB2_01916	0.41	+3.0
2,057,613	+		EFB2_01916	0.41	-1.1
2,057,613	+		EFB2_01916	0.41	+2.2
2,057,613	+		EFB2_01916	0.41	-1.0
2,057,613	+		EFB2_01916	0.41	-0.9
2,057,613	+		EFB2_01916	0.41	+2.4
2,057,613	+		EFB2_01916	0.41	-1.7
2,057,613	+		EFB2_01916	0.41	+1.1
2,057,613	+		EFB2_01916	0.41	+0.6
2,057,614	-		EFB2_01916	0.41	+2.3
2,057,614	-		EFB2_01916	0.41	+0.0
2,057,614	-		EFB2_01916	0.41	-0.8
2,057,614	-		EFB2_01916	0.41	-1.8
2,057,614	-		EFB2_01916	0.41	-1.2
2,057,614	-		EFB2_01916	0.41	+2.5
2,057,614	-		EFB2_01916	0.41	-0.7
2,057,614	-		EFB2_01916	0.41	-1.9
2,057,614	-		EFB2_01916	0.41	+0.7
2,057,616	+		EFB2_01916	0.41	+0.4
2,057,616	+		EFB2_01916	0.41	+1.2
2,057,616	+		EFB2_01916	0.41	+0.5
2,057,616	+		EFB2_01916	0.41	-1.3
2,057,616	+		EFB2_01916	0.41	+1.8
2,057,616	+		EFB2_01916	0.41	-1.3
2,057,616	+		EFB2_01916	0.41	-2.6
2,057,616	+		EFB2_01916	0.41	+1.7
2,057,617	-		EFB2_01916	0.41	-1.5
2,057,617	-		EFB2_01916	0.41	+0.5
2,057,617	-		EFB2_01916	0.41	-2.8
2,057,617	-		EFB2_01916	0.41	-0.8
2,057,697	+		EFB2_01916	0.46	-0.9
2,057,698	-		EFB2_01916	0.46	-1.1
2,057,707	+		EFB2_01916	0.47	-1.7
2,057,716	+		EFB2_01916	0.48	-1.5
2,057,716	+		EFB2_01916	0.48	-0.3
2,057,716	+		EFB2_01916	0.48	+0.9
2,057,716	+		EFB2_01916	0.48	-1.1
2,057,716	+		EFB2_01916	0.48	-0.7
2,057,716	+		EFB2_01916	0.48	+1.3
2,057,716	+		EFB2_01916	0.48	-1.1
2,057,716	+		EFB2_01916	0.48	+0.9
2,057,716	+		EFB2_01916	0.48	+0.4
2,057,717	-		EFB2_01916	0.48	-0.3
2,057,717	-		EFB2_01916	0.48	-2.6
2,057,717	-		EFB2_01916	0.48	+2.2
2,057,732	+		EFB2_01916	0.49	+1.4
2,057,732	+		EFB2_01916	0.49	+2.9
2,057,732	+		EFB2_01916	0.49	-0.8
2,057,732	+		EFB2_01916	0.49	-1.5
2,057,732	+		EFB2_01916	0.49	-0.1
2,057,732	+		EFB2_01916	0.49	+1.8
2,057,732	+		EFB2_01916	0.49	-0.2
2,057,732	+		EFB2_01916	0.49	-3.0
2,057,732	+		EFB2_01916	0.49	-2.1
2,057,732	+		EFB2_01916	0.49	-1.2
2,057,732	+		EFB2_01916	0.49	-2.7
2,057,732	+		EFB2_01916	0.49	-0.9
2,057,732	+		EFB2_01916	0.49	-1.2
2,057,732	+		EFB2_01916	0.49	+1.8
2,057,733	-		EFB2_01916	0.49	+0.0
2,057,733	-		EFB2_01916	0.49	+0.7
2,057,733	-		EFB2_01916	0.49	+1.8
2,057,733	-		EFB2_01916	0.49	-2.1
2,057,733	-		EFB2_01916	0.49	-1.9
2,057,733	-		EFB2_01916	0.49	-0.7
2,057,733	-		EFB2_01916	0.49	-1.5
2,057,736	+		EFB2_01916	0.49	-0.3
2,057,748	+		EFB2_01916	0.50	-0.0
2,057,748	+		EFB2_01916	0.50	+2.0
2,057,748	+		EFB2_01916	0.50	+0.9
2,057,748	+		EFB2_01916	0.50	+0.2
2,057,749	-		EFB2_01916	0.50	-2.5
2,057,749	-		EFB2_01916	0.50	-1.2
2,057,749	-		EFB2_01916	0.50	-0.3
2,057,749	-		EFB2_01916	0.50	-0.9
2,057,749	-		EFB2_01916	0.50	+3.0
2,057,750	+		EFB2_01916	0.50	+0.3
2,057,750	+		EFB2_01916	0.50	+0.7
2,057,750	+		EFB2_01916	0.50	-1.7
2,057,750	+		EFB2_01916	0.50	+0.7
2,057,750	+		EFB2_01916	0.50	+0.5
2,057,750	+		EFB2_01916	0.50	-2.8
2,057,750	+		EFB2_01916	0.50	+1.6
2,057,750	+		EFB2_01916	0.50	+4.8
2,057,750	+		EFB2_01916	0.50	-2.9
2,057,751	-		EFB2_01916	0.50	+3.8
2,057,751	-		EFB2_01916	0.50	-0.8
2,057,751	-		EFB2_01916	0.50	+0.2
2,057,751	-		EFB2_01916	0.50	-1.9
2,057,751	-		EFB2_01916	0.50	+0.9
2,057,751	-		EFB2_01916	0.50	-0.5
2,057,751	-		EFB2_01916	0.50	+0.1
2,057,751	-		EFB2_01916	0.50	-2.0
2,057,751	-		EFB2_01916	0.50	-1.5
2,057,786	-		EFB2_01916	0.53	-2.7
2,057,849	+		EFB2_01916	0.57	-2.8
2,057,849	+		EFB2_01916	0.57	+0.7
2,057,849	+		EFB2_01916	0.57	+0.9
2,057,849	+		EFB2_01916	0.57	+2.0
2,057,850	-		EFB2_01916	0.57	+1.1
2,057,857	+		EFB2_01916	0.57	+2.3
2,057,858	-		EFB2_01916	0.58	-0.5
2,057,858	-		EFB2_01916	0.58	-2.1
2,057,869	-		EFB2_01916	0.58	+2.5
2,057,885	+		EFB2_01916	0.59	+1.0
2,057,885	+		EFB2_01916	0.59	+0.6
2,057,904	+		EFB2_01916	0.61	+0.2
2,057,926	+		EFB2_01916	0.62	-0.7
2,057,926	+		EFB2_01916	0.62	-1.8
2,058,025	+		EFB2_01916	0.69	-0.0
2,058,026	-		EFB2_01916	0.69	+1.1
2,058,026	-		EFB2_01916	0.69	+1.1
2,058,054	+		EFB2_01916	0.71	+1.7
2,058,054	+		EFB2_01916	0.71	-2.5
2,058,054	+		EFB2_01916	0.71	-1.5
2,058,054	+		EFB2_01916	0.71	-0.7
2,058,054	+		EFB2_01916	0.71	+0.0
2,058,055	-		EFB2_01916	0.71	+1.9
2,058,055	-		EFB2_01916	0.71	+4.3
2,058,055	-		EFB2_01916	0.71	-2.0
2,058,081	+		EFB2_01916	0.73	-0.3
2,058,081	+		EFB2_01916	0.73	-2.6
2,058,081	+		EFB2_01916	0.73	+0.2
2,058,081	+		EFB2_01916	0.73	-0.1
2,058,081	+		EFB2_01916	0.73	-1.9
2,058,081	+		EFB2_01916	0.73	+3.1
2,058,082	-		EFB2_01916	0.73	-1.4
2,058,082	-		EFB2_01916	0.73	+0.1
2,058,082	-		EFB2_01916	0.73	+0.2
2,058,082	-		EFB2_01916	0.73	+2.1
2,058,082	-		EFB2_01916	0.73	-1.3
2,058,082	-		EFB2_01916	0.73	+0.2
2,058,082	-		EFB2_01916	0.73	-2.1
2,058,086	+		EFB2_01916	0.73	-0.5
2,058,087	-		EFB2_01916	0.73	+2.2
2,058,087	-		EFB2_01916	0.73	-0.5
2,058,087	-		EFB2_01916	0.73	-1.7
2,058,087	-		EFB2_01916	0.73	+0.5
2,058,087	-		EFB2_01916	0.73	-2.1
2,058,087	-		EFB2_01916	0.73	+0.5
2,058,087	-		EFB2_01916	0.73	+0.1
2,058,103	+		EFB2_01916	0.75	+0.5
2,058,103	+		EFB2_01916	0.75	+0.4
2,058,103	+		EFB2_01916	0.75	-2.2
2,058,103	+		EFB2_01916	0.75	-1.9
2,058,103	+		EFB2_01916	0.75	+1.2
2,058,103	+		EFB2_01916	0.75	-2.5
2,058,103	+		EFB2_01916	0.75	+0.1
2,058,103	+		EFB2_01916	0.75	+0.5
2,058,103	+		EFB2_01916	0.75	+0.4
2,058,103	+		EFB2_01916	0.75	+0.9
2,058,103	+		EFB2_01916	0.75	-2.1
2,058,103	+		EFB2_01916	0.75	-2.1
2,058,103	+		EFB2_01916	0.75	-2.3
2,058,103	+		EFB2_01916	0.75	+1.3
2,058,104	-		EFB2_01916	0.75	+0.3
2,058,104	-		EFB2_01916	0.75	+0.8
2,058,104	-		EFB2_01916	0.75	-1.8
2,058,104	-		EFB2_01916	0.75	+0.2
2,058,114	+		EFB2_01916	0.75	-2.9
2,058,115	-		EFB2_01916	0.75	-2.3
2,058,139	+		EFB2_01916	0.77	+0.7
2,058,140	-		EFB2_01916	0.77	+1.1
2,058,140	-		EFB2_01916	0.77	+2.0
2,058,140	-		EFB2_01916	0.77	-1.0
2,058,140	-		EFB2_01916	0.77	+2.5
2,058,160	-		EFB2_01916	0.79	-1.1
2,058,211	+		EFB2_01916	0.82	+0.9
2,058,211	+		EFB2_01916	0.82	-0.3
2,058,211	+		EFB2_01916	0.82	-0.2
2,058,212	-		EFB2_01916	0.82	-1.2
2,058,215	-		EFB2_01916	0.82	+0.6
2,058,228	+		EFB2_01916	0.83	-0.8
2,058,229	-		EFB2_01916	0.83	+0.7
2,058,229	-		EFB2_01916	0.83	-2.1
2,058,229	-		EFB2_01916	0.83	+2.4
2,058,229	-		EFB2_01916	0.83	-1.2
2,058,238	+		EFB2_01916	0.84	-1.7
2,058,238	+		EFB2_01916	0.84	+3.2
2,058,239	-		EFB2_01916	0.84	-1.4
2,058,273	+		EFB2_01916	0.86	-2.0
2,058,273	+		EFB2_01916	0.86	+1.7
2,058,273	+		EFB2_01916	0.86	-1.2
2,058,273	+		EFB2_01916	0.86	-0.1
2,058,273	+		EFB2_01916	0.86	-1.9
2,058,273	+		EFB2_01916	0.86	-1.9
2,058,273	+		EFB2_01916	0.86	+0.5
2,058,273	+		EFB2_01916	0.86	-2.6
2,058,274	-		EFB2_01916	0.86	-1.3
2,058,274	-		EFB2_01916	0.86	-1.9
2,058,274	-		EFB2_01916	0.86	+0.5
2,058,274	-		EFB2_01916	0.86	-1.3
2,058,274	-		EFB2_01916	0.86	+0.8
2,058,274	-		EFB2_01916	0.86	+0.9
2,058,274	-		EFB2_01916	0.86	-0.1
2,058,274	-		EFB2_01916	0.86	+1.9
2,058,274	-		EFB2_01916	0.86	+1.3
2,058,274	-		EFB2_01916	0.86	+2.1
2,058,274	-		EFB2_01916	0.86	-2.0
2,058,274	-		EFB2_01916	0.86	-1.1
2,058,274	-		EFB2_01916	0.86	-0.5
2,058,274	-		EFB2_01916	0.86	+0.4
2,058,274	-		EFB2_01916	0.86	+2.2
2,058,274	-		EFB2_01916	0.86	+3.1
2,058,274	-		EFB2_01916	0.86	+0.5
2,058,275	+		EFB2_01916	0.87	-0.0
2,058,275	+		EFB2_01916	0.87	-0.6
2,058,275	+		EFB2_01916	0.87	+1.0
2,058,276	-		EFB2_01916	0.87	+0.8
2,058,276	-		EFB2_01916	0.87	+1.5
2,058,276	-		EFB2_01916	0.87	+0.4
2,058,276	-		EFB2_01916	0.87	-2.2
2,058,276	-		EFB2_01916	0.87	-0.4
2,058,290	+		EFB2_01916	0.88	-2.6
2,058,290	+		EFB2_01916	0.88	-1.1
2,058,290	+		EFB2_01916	0.88	-0.6
2,058,290	+		EFB2_01916	0.88	+0.7
2,058,290	+		EFB2_01916	0.88	-0.3
2,058,290	+		EFB2_01916	0.88	-2.2
2,058,290	+		EFB2_01916	0.88	+0.2
2,058,291	-		EFB2_01916	0.88	-0.5
2,058,291	-		EFB2_01916	0.88	+0.9
2,058,291	-		EFB2_01916	0.88	+0.2
2,058,291	-		EFB2_01916	0.88	+1.2
2,058,292	+		EFB2_01916	0.88	+0.4
2,058,292	+		EFB2_01916	0.88	+0.8
2,058,292	+		EFB2_01916	0.88	+0.8
2,058,292	+		EFB2_01916	0.88	-0.7
2,058,292	+		EFB2_01916	0.88	+0.3
2,058,292	+		EFB2_01916	0.88	-2.0
2,058,292	+		EFB2_01916	0.88	+2.3
2,058,292	+		EFB2_01916	0.88	+0.4
2,058,292	+		EFB2_01916	0.88	+1.1
2,058,292	+		EFB2_01916	0.88	+0.5
2,058,293	-		EFB2_01916	0.88	-2.7
2,058,293	-		EFB2_01916	0.88	-0.1
2,058,293	-		EFB2_01916	0.88	+0.4
2,058,293	-		EFB2_01916	0.88	-1.3
2,058,293	-		EFB2_01916	0.88	-0.2
2,058,293	-		EFB2_01916	0.88	-0.0
2,058,293	-		EFB2_01916	0.88	+1.1
2,058,293	-		EFB2_01916	0.88	-1.8
2,058,293	-		EFB2_01916	0.88	+1.6
2,058,311	+		EFB2_01916	0.89	-0.5
2,058,311	+		EFB2_01916	0.89	-2.7
2,058,312	-		EFB2_01916	0.89	+0.9
2,058,312	-		EFB2_01916	0.89	+0.4
2,058,321	+		EFB2_01916	0.90	+1.6
2,058,321	+		EFB2_01916	0.90	+1.6
2,058,322	-		EFB2_01916	0.90	-0.1
2,058,322	-		EFB2_01916	0.90	+0.1
2,058,322	-		EFB2_01916	0.90	-0.7
2,058,322	-		EFB2_01916	0.90	+0.3
2,058,324	+		EFB2_01916	0.90	+0.3
2,058,325	-				+2.5
2,058,334	+				-2.8
2,058,335	-				-2.2
2,058,525	+				+0.7
2,058,525	+				+2.8
2,058,526	-				+0.3
2,058,526	-				+2.3
2,058,526	-				-2.5
2,058,526	-				+3.1
2,058,531	+				-2.5
2,058,531	+				+2.2
2,058,531	+				-2.6
2,058,531	+				+0.1
2,058,531	+				-1.8
2,058,531	+				+0.9
2,058,531	+				+0.4
2,058,531	+				+0.2
2,058,531	+				-2.2
2,058,531	+				+0.9
2,058,531	+				-2.4
2,058,531	+				+1.7
2,058,531	+				-0.5
2,058,531	+				-0.7
2,058,531	+				+0.4
2,058,532	-				-0.5
2,058,532	-				+2.9
2,058,532	-				-2.4
2,058,532	-				+0.2
2,058,532	-				+1.3
2,058,532	-				-1.6
2,058,532	-				+3.5
2,058,532	-				+1.0
2,058,532	-				+0.2
2,058,532	-				-0.2
2,058,542	-				-2.0
2,058,595	+				+1.3
2,058,595	+				-1.5
2,058,596	-				+0.9
2,058,641	+				+1.1
2,058,641	+				-2.7
2,058,641	+				-0.5
2,058,641	+				+0.8
2,058,641	+				+0.9
2,058,641	+				+0.8
2,058,641	+				+0.8
2,058,641	+				+1.7
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