Strain Fitness in Escherichia fergusonii Becca around EFB2_00186

Experiment: BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntEFB2_00185 and EFB2_00186 are separated by 9 nucleotidesEFB2_00186 and EFB2_00187 are separated by 25 nucleotides EFB2_00185: EFB2_00185 - hypothetical protein, at 174,447 to 175,442 _00185 EFB2_00186: EFB2_00186 - Lipopolysaccharide core heptose(II) kinase RfaY, at 175,452 to 176,144 _00186 EFB2_00187: EFB2_00187 - General stress protein A, at 176,170 to 177,198 _00187 Position (kb) 175 176 177Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 174.514 kb on + strandat 174.549 kb on + strand, within EFB2_00185at 174.642 kb on + strand, within EFB2_00185at 174.689 kb on + strand, within EFB2_00185at 174.695 kb on - strand, within EFB2_00185at 174.751 kb on - strand, within EFB2_00185at 174.759 kb on + strand, within EFB2_00185at 174.759 kb on + strand, within EFB2_00185at 174.760 kb on - strand, within EFB2_00185at 174.797 kb on + strand, within EFB2_00185at 174.813 kb on + strand, within EFB2_00185at 174.872 kb on + strand, within EFB2_00185at 174.873 kb on - strand, within EFB2_00185at 174.908 kb on + strand, within EFB2_00185at 174.908 kb on + strand, within EFB2_00185at 174.909 kb on - strand, within EFB2_00185at 174.911 kb on + strand, within EFB2_00185at 174.938 kb on + strand, within EFB2_00185at 174.964 kb on - strand, within EFB2_00185at 174.984 kb on + strand, within EFB2_00185at 175.056 kb on - strand, within EFB2_00185at 175.060 kb on - strand, within EFB2_00185at 175.060 kb on - strand, within EFB2_00185at 175.106 kb on + strand, within EFB2_00185at 175.122 kb on + strand, within EFB2_00185at 175.178 kb on + strand, within EFB2_00185at 175.178 kb on + strand, within EFB2_00185at 175.211 kb on + strand, within EFB2_00185at 175.211 kb on + strand, within EFB2_00185at 175.233 kb on - strand, within EFB2_00185at 175.244 kb on + strand, within EFB2_00185at 175.245 kb on - strand, within EFB2_00185at 175.245 kb on - strand, within EFB2_00185at 175.256 kb on + strand, within EFB2_00185at 175.257 kb on - strand, within EFB2_00185at 175.257 kb on - strand, within EFB2_00185at 175.323 kb on + strand, within EFB2_00185at 175.370 kb on + strandat 175.371 kb on - strandat 175.371 kb on - strandat 175.408 kb on + strandat 175.451 kb on + strandat 175.457 kb on + strandat 175.465 kb on + strandat 175.509 kb on - strandat 175.591 kb on + strand, within EFB2_00186at 175.604 kb on + strand, within EFB2_00186at 175.611 kb on + strand, within EFB2_00186at 175.692 kb on + strand, within EFB2_00186at 175.791 kb on + strand, within EFB2_00186at 175.791 kb on + strand, within EFB2_00186at 175.834 kb on + strand, within EFB2_00186at 175.835 kb on - strand, within EFB2_00186at 175.835 kb on - strand, within EFB2_00186at 175.847 kb on + strand, within EFB2_00186at 175.912 kb on + strand, within EFB2_00186at 175.913 kb on - strand, within EFB2_00186at 175.916 kb on + strand, within EFB2_00186at 175.916 kb on + strand, within EFB2_00186at 175.916 kb on + strand, within EFB2_00186at 175.958 kb on + strand, within EFB2_00186at 175.958 kb on + strand, within EFB2_00186at 175.992 kb on - strand, within EFB2_00186at 176.082 kb on + strandat 176.094 kb on + strandat 176.107 kb on + strandat 176.180 kb on + strandat 176.181 kb on - strandat 176.191 kb on - strandat 176.191 kb on - strandat 176.240 kb on + strandat 176.240 kb on + strandat 176.241 kb on - strandat 176.247 kb on - strandat 176.288 kb on + strand, within EFB2_00187at 176.288 kb on + strand, within EFB2_00187at 176.289 kb on - strand, within EFB2_00187at 176.289 kb on - strand, within EFB2_00187at 176.292 kb on + strand, within EFB2_00187at 176.292 kb on + strand, within EFB2_00187at 176.292 kb on + strand, within EFB2_00187at 176.293 kb on - strand, within EFB2_00187at 176.293 kb on - strand, within EFB2_00187at 176.293 kb on - strand, within EFB2_00187at 176.307 kb on + strand, within EFB2_00187at 176.307 kb on + strand, within EFB2_00187at 176.346 kb on + strand, within EFB2_00187at 176.368 kb on + strand, within EFB2_00187at 176.369 kb on - strand, within EFB2_00187at 176.372 kb on + strand, within EFB2_00187at 176.373 kb on - strand, within EFB2_00187at 176.382 kb on + strand, within EFB2_00187at 176.417 kb on + strand, within EFB2_00187at 176.432 kb on + strand, within EFB2_00187at 176.446 kb on - strand, within EFB2_00187at 176.498 kb on + strand, within EFB2_00187at 176.498 kb on + strand, within EFB2_00187at 176.512 kb on + strand, within EFB2_00187at 176.513 kb on - strand, within EFB2_00187at 176.540 kb on + strand, within EFB2_00187at 176.542 kb on + strand, within EFB2_00187at 176.542 kb on + strand, within EFB2_00187at 176.543 kb on - strand, within EFB2_00187at 176.543 kb on - strand, within EFB2_00187at 176.543 kb on - strand, within EFB2_00187at 176.544 kb on + strand, within EFB2_00187at 176.561 kb on + strand, within EFB2_00187at 176.561 kb on + strand, within EFB2_00187at 176.562 kb on - strand, within EFB2_00187at 176.566 kb on - strand, within EFB2_00187at 176.595 kb on + strand, within EFB2_00187at 176.625 kb on + strand, within EFB2_00187at 176.643 kb on + strand, within EFB2_00187at 176.643 kb on + strand, within EFB2_00187at 176.675 kb on + strand, within EFB2_00187at 176.676 kb on - strand, within EFB2_00187at 176.676 kb on - strand, within EFB2_00187at 176.695 kb on + strand, within EFB2_00187at 176.711 kb on + strand, within EFB2_00187at 176.711 kb on + strand, within EFB2_00187at 176.711 kb on + strand, within EFB2_00187at 176.712 kb on - strand, within EFB2_00187at 176.712 kb on - strand, within EFB2_00187at 176.714 kb on + strand, within EFB2_00187at 176.714 kb on + strand, within EFB2_00187at 176.715 kb on - strand, within EFB2_00187at 176.717 kb on - strand, within EFB2_00187at 176.717 kb on - strand, within EFB2_00187at 176.769 kb on + strand, within EFB2_00187at 176.802 kb on + strand, within EFB2_00187at 176.881 kb on + strand, within EFB2_00187at 176.893 kb on + strand, within EFB2_00187at 176.923 kb on + strand, within EFB2_00187at 176.947 kb on - strand, within EFB2_00187at 176.949 kb on + strand, within EFB2_00187at 176.949 kb on + strand, within EFB2_00187at 176.949 kb on + strand, within EFB2_00187at 176.950 kb on - strand, within EFB2_00187at 176.962 kb on + strand, within EFB2_00187at 176.963 kb on - strand, within EFB2_00187at 177.032 kb on - strand, within EFB2_00187at 177.089 kb on - strand, within EFB2_00187at 177.127 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction BHIS no phage control with stool-derived community from humanized mice (condition: pre-antibiotic, MAC-deficient diet, mouse 1)
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174,514 + -0.2
174,549 + EFB2_00185 0.10 -0.2
174,642 + EFB2_00185 0.20 -0.4
174,689 + EFB2_00185 0.24 +0.4
174,695 - EFB2_00185 0.25 -0.4
174,751 - EFB2_00185 0.31 +1.1
174,759 + EFB2_00185 0.31 -1.5
174,759 + EFB2_00185 0.31 -1.4
174,760 - EFB2_00185 0.31 -1.5
174,797 + EFB2_00185 0.35 +0.7
174,813 + EFB2_00185 0.37 +1.5
174,872 + EFB2_00185 0.43 -1.1
174,873 - EFB2_00185 0.43 -3.1
174,908 + EFB2_00185 0.46 -0.9
174,908 + EFB2_00185 0.46 -1.0
174,909 - EFB2_00185 0.46 +1.2
174,911 + EFB2_00185 0.47 -0.7
174,938 + EFB2_00185 0.49 +0.3
174,964 - EFB2_00185 0.52 -1.4
174,984 + EFB2_00185 0.54 -0.3
175,056 - EFB2_00185 0.61 +0.0
175,060 - EFB2_00185 0.62 -2.3
175,060 - EFB2_00185 0.62 -1.1
175,106 + EFB2_00185 0.66 -2.1
175,122 + EFB2_00185 0.68 +0.9
175,178 + EFB2_00185 0.73 -2.1
175,178 + EFB2_00185 0.73 -1.0
175,211 + EFB2_00185 0.77 -1.3
175,211 + EFB2_00185 0.77 -2.6
175,233 - EFB2_00185 0.79 -0.6
175,244 + EFB2_00185 0.80 -2.6
175,245 - EFB2_00185 0.80 -1.0
175,245 - EFB2_00185 0.80 +0.3
175,256 + EFB2_00185 0.81 -0.9
175,257 - EFB2_00185 0.81 +0.2
175,257 - EFB2_00185 0.81 -1.6
175,323 + EFB2_00185 0.88 -0.3
175,370 + -0.7
175,371 - -0.9
175,371 - -2.5
175,408 + +0.6
175,451 + -0.0
175,457 + -0.6
175,465 + -2.6
175,509 - +2.3
175,591 + EFB2_00186 0.20 +0.7
175,604 + EFB2_00186 0.22 +1.9
175,611 + EFB2_00186 0.23 +0.3
175,692 + EFB2_00186 0.35 -1.2
175,791 + EFB2_00186 0.49 +0.0
175,791 + EFB2_00186 0.49 +2.5
175,834 + EFB2_00186 0.55 +0.1
175,835 - EFB2_00186 0.55 -2.4
175,835 - EFB2_00186 0.55 +0.3
175,847 + EFB2_00186 0.57 +0.0
175,912 + EFB2_00186 0.66 +1.3
175,913 - EFB2_00186 0.67 +1.6
175,916 + EFB2_00186 0.67 +0.7
175,916 + EFB2_00186 0.67 +0.1
175,916 + EFB2_00186 0.67 +0.0
175,958 + EFB2_00186 0.73 +0.6
175,958 + EFB2_00186 0.73 +1.1
175,992 - EFB2_00186 0.78 -1.3
176,082 + +0.2
176,094 + +0.2
176,107 + +2.8
176,180 + -1.5
176,181 - -1.0
176,191 - -1.8
176,191 - -2.9
176,240 + -2.9
176,240 + -0.3
176,241 - +0.2
176,247 - +3.3
176,288 + EFB2_00187 0.11 +0.7
176,288 + EFB2_00187 0.11 -2.3
176,289 - EFB2_00187 0.12 +0.3
176,289 - EFB2_00187 0.12 -1.1
176,292 + EFB2_00187 0.12 +0.9
176,292 + EFB2_00187 0.12 -1.6
176,292 + EFB2_00187 0.12 -0.8
176,293 - EFB2_00187 0.12 +0.8
176,293 - EFB2_00187 0.12 +1.3
176,293 - EFB2_00187 0.12 +1.1
176,307 + EFB2_00187 0.13 -0.8
176,307 + EFB2_00187 0.13 +0.2
176,346 + EFB2_00187 0.17 +0.3
176,368 + EFB2_00187 0.19 -1.1
176,369 - EFB2_00187 0.19 -1.1
176,372 + EFB2_00187 0.20 +0.0
176,373 - EFB2_00187 0.20 -1.6
176,382 + EFB2_00187 0.21 +2.1
176,417 + EFB2_00187 0.24 -0.5
176,432 + EFB2_00187 0.25 -0.8
176,446 - EFB2_00187 0.27 +0.8
176,498 + EFB2_00187 0.32 -1.0
176,498 + EFB2_00187 0.32 +0.7
176,512 + EFB2_00187 0.33 -2.5
176,513 - EFB2_00187 0.33 -2.1
176,540 + EFB2_00187 0.36 +0.8
176,542 + EFB2_00187 0.36 -0.4
176,542 + EFB2_00187 0.36 +0.7
176,543 - EFB2_00187 0.36 +0.8
176,543 - EFB2_00187 0.36 +0.0
176,543 - EFB2_00187 0.36 -0.9
176,544 + EFB2_00187 0.36 -0.8
176,561 + EFB2_00187 0.38 +0.2
176,561 + EFB2_00187 0.38 -2.6
176,562 - EFB2_00187 0.38 -2.4
176,566 - EFB2_00187 0.38 -1.7
176,595 + EFB2_00187 0.41 -2.6
176,625 + EFB2_00187 0.44 +0.4
176,643 + EFB2_00187 0.46 -0.1
176,643 + EFB2_00187 0.46 -2.3
176,675 + EFB2_00187 0.49 -2.4
176,676 - EFB2_00187 0.49 -3.0
176,676 - EFB2_00187 0.49 +0.8
176,695 + EFB2_00187 0.51 -0.0
176,711 + EFB2_00187 0.53 -0.2
176,711 + EFB2_00187 0.53 -1.6
176,711 + EFB2_00187 0.53 -2.0
176,712 - EFB2_00187 0.53 +0.5
176,712 - EFB2_00187 0.53 +1.0
176,714 + EFB2_00187 0.53 +3.1
176,714 + EFB2_00187 0.53 +1.1
176,715 - EFB2_00187 0.53 +0.2
176,717 - EFB2_00187 0.53 +0.9
176,717 - EFB2_00187 0.53 +0.7
176,769 + EFB2_00187 0.58 +1.2
176,802 + EFB2_00187 0.61 +0.2
176,881 + EFB2_00187 0.69 +1.9
176,893 + EFB2_00187 0.70 -0.5
176,923 + EFB2_00187 0.73 +1.0
176,947 - EFB2_00187 0.76 -0.0
176,949 + EFB2_00187 0.76 +1.6
176,949 + EFB2_00187 0.76 +1.1
176,949 + EFB2_00187 0.76 -1.0
176,950 - EFB2_00187 0.76 -1.0
176,962 + EFB2_00187 0.77 +0.6
176,963 - EFB2_00187 0.77 -1.7
177,032 - EFB2_00187 0.84 +1.7
177,089 - EFB2_00187 0.89 -1.8
177,127 - +2.2

Or see this region's nucleotide sequence