Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04280

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04278 and BACOVA_04279 are separated by 88 nucleotidesBACOVA_04279 and BACOVA_04280 are separated by 99 nucleotidesBACOVA_04280 and BACOVA_04281 are separated by 376 nucleotides BACOVA_04278: BACOVA_04278 - transcriptional regulator, AraC family, at 165,521 to 166,360 _04278 BACOVA_04279: BACOVA_04279 - hypothetical protein, at 166,449 to 167,030 _04279 BACOVA_04280: BACOVA_04280 - pyridine nucleotide-disulfide oxidoreductase, at 167,130 to 168,503 _04280 BACOVA_04281: BACOVA_04281 - ABC transporter, ATP-binding protein, at 168,880 to 170,514 _04281 Position (kb) 167 168 169Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 166.226 kb on + strand, within BACOVA_04278at 166.259 kb on - strand, within BACOVA_04278at 166.327 kb on - strandat 166.376 kb on + strandat 166.383 kb on - strandat 166.420 kb on + strandat 166.421 kb on - strandat 166.421 kb on - strandat 166.421 kb on - strandat 166.426 kb on - strandat 166.435 kb on - strandat 166.471 kb on + strandat 166.472 kb on - strandat 166.472 kb on - strandat 166.512 kb on - strand, within BACOVA_04279at 166.534 kb on + strand, within BACOVA_04279at 166.537 kb on + strand, within BACOVA_04279at 166.544 kb on - strand, within BACOVA_04279at 166.563 kb on + strand, within BACOVA_04279at 166.572 kb on + strand, within BACOVA_04279at 166.629 kb on + strand, within BACOVA_04279at 166.630 kb on - strand, within BACOVA_04279at 166.722 kb on + strand, within BACOVA_04279at 166.723 kb on - strand, within BACOVA_04279at 166.723 kb on - strand, within BACOVA_04279at 166.723 kb on - strand, within BACOVA_04279at 166.724 kb on + strand, within BACOVA_04279at 166.734 kb on + strand, within BACOVA_04279at 166.752 kb on - strand, within BACOVA_04279at 166.752 kb on - strand, within BACOVA_04279at 166.752 kb on - strand, within BACOVA_04279at 166.752 kb on - strand, within BACOVA_04279at 166.752 kb on - strand, within BACOVA_04279at 166.775 kb on - strand, within BACOVA_04279at 166.829 kb on + strand, within BACOVA_04279at 166.918 kb on + strand, within BACOVA_04279at 166.919 kb on - strand, within BACOVA_04279at 166.982 kb on - strandat 167.019 kb on - strandat 167.028 kb on + strandat 167.041 kb on - strandat 167.096 kb on + strandat 167.097 kb on - strandat 167.098 kb on + strandat 167.098 kb on + strandat 167.098 kb on + strandat 167.106 kb on + strandat 167.129 kb on + strandat 167.139 kb on + strandat 167.150 kb on + strandat 167.156 kb on - strandat 167.156 kb on - strandat 167.244 kb on + strandat 167.244 kb on + strandat 167.244 kb on + strandat 167.245 kb on - strandat 167.245 kb on - strandat 167.245 kb on - strandat 167.266 kb on + strandat 167.274 kb on - strand, within BACOVA_04280at 167.351 kb on + strand, within BACOVA_04280at 167.355 kb on + strand, within BACOVA_04280at 167.356 kb on - strand, within BACOVA_04280at 167.356 kb on - strand, within BACOVA_04280at 167.356 kb on - strand, within BACOVA_04280at 167.426 kb on + strand, within BACOVA_04280at 167.427 kb on - strand, within BACOVA_04280at 167.444 kb on + strand, within BACOVA_04280at 167.448 kb on + strand, within BACOVA_04280at 167.449 kb on - strand, within BACOVA_04280at 167.468 kb on + strand, within BACOVA_04280at 167.481 kb on - strand, within BACOVA_04280at 167.484 kb on - strand, within BACOVA_04280at 167.484 kb on - strand, within BACOVA_04280at 167.491 kb on + strand, within BACOVA_04280at 167.491 kb on + strand, within BACOVA_04280at 167.492 kb on - strand, within BACOVA_04280at 167.497 kb on + strand, within BACOVA_04280at 167.508 kb on + strand, within BACOVA_04280at 167.510 kb on + strand, within BACOVA_04280at 167.511 kb on - strand, within BACOVA_04280at 167.537 kb on + strand, within BACOVA_04280at 167.537 kb on + strand, within BACOVA_04280at 167.553 kb on - strand, within BACOVA_04280at 167.559 kb on - strand, within BACOVA_04280at 167.599 kb on + strand, within BACOVA_04280at 167.599 kb on + strand, within BACOVA_04280at 167.599 kb on + strand, within BACOVA_04280at 167.600 kb on - strand, within BACOVA_04280at 167.600 kb on - strand, within BACOVA_04280at 167.600 kb on - strand, within BACOVA_04280at 167.601 kb on + strand, within BACOVA_04280at 167.601 kb on + strand, within BACOVA_04280at 167.602 kb on - strand, within BACOVA_04280at 167.603 kb on + strand, within BACOVA_04280at 167.603 kb on + strand, within BACOVA_04280at 167.627 kb on - strand, within BACOVA_04280at 167.627 kb on - strand, within BACOVA_04280at 167.627 kb on - strand, within BACOVA_04280at 167.632 kb on + strand, within BACOVA_04280at 167.632 kb on + strand, within BACOVA_04280at 167.668 kb on - strand, within BACOVA_04280at 167.669 kb on + strand, within BACOVA_04280at 167.669 kb on + strand, within BACOVA_04280at 167.670 kb on - strand, within BACOVA_04280at 167.690 kb on + strand, within BACOVA_04280at 167.690 kb on + strand, within BACOVA_04280at 167.690 kb on + strand, within BACOVA_04280at 167.691 kb on - strand, within BACOVA_04280at 167.695 kb on - strand, within BACOVA_04280at 167.712 kb on - strand, within BACOVA_04280at 167.745 kb on - strand, within BACOVA_04280at 167.745 kb on - strand, within BACOVA_04280at 167.837 kb on + strand, within BACOVA_04280at 167.838 kb on - strand, within BACOVA_04280at 167.871 kb on + strand, within BACOVA_04280at 167.872 kb on - strand, within BACOVA_04280at 167.898 kb on + strand, within BACOVA_04280at 167.898 kb on + strand, within BACOVA_04280at 167.899 kb on - strand, within BACOVA_04280at 167.901 kb on + strand, within BACOVA_04280at 167.901 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 167.905 kb on + strand, within BACOVA_04280at 168.030 kb on - strand, within BACOVA_04280at 168.042 kb on - strand, within BACOVA_04280at 168.044 kb on - strand, within BACOVA_04280at 168.080 kb on + strand, within BACOVA_04280at 168.172 kb on - strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.182 kb on + strand, within BACOVA_04280at 168.240 kb on + strand, within BACOVA_04280at 168.291 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.312 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.317 kb on - strand, within BACOVA_04280at 168.332 kb on + strand, within BACOVA_04280at 168.396 kb on - strandat 168.400 kb on + strandat 168.404 kb on + strandat 168.405 kb on - strandat 168.500 kb on - strandat 168.501 kb on + strandat 168.518 kb on - strandat 168.641 kb on + strandat 168.656 kb on + strandat 168.686 kb on + strandat 168.692 kb on - strandat 168.695 kb on + strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.696 kb on - strandat 168.699 kb on + strandat 168.714 kb on + strandat 168.715 kb on - strandat 168.722 kb on - strandat 168.722 kb on - strandat 168.740 kb on - strandat 168.755 kb on + strandat 168.776 kb on + strandat 168.808 kb on + strandat 168.872 kb on - strandat 168.885 kb on + strandat 168.907 kb on + strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.908 kb on - strandat 168.909 kb on + strandat 168.929 kb on + strandat 168.960 kb on + strandat 168.961 kb on - strandat 168.974 kb on + strandat 168.980 kb on + strandat 169.009 kb on - strandat 169.038 kb on - strandat 169.078 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.081 kb on + strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.082 kb on - strand, within BACOVA_04281at 169.084 kb on - strand, within BACOVA_04281at 169.140 kb on - strand, within BACOVA_04281at 169.265 kb on + strand, within BACOVA_04281at 169.275 kb on + strand, within BACOVA_04281at 169.338 kb on + strand, within BACOVA_04281at 169.338 kb on + strand, within BACOVA_04281at 169.364 kb on + strand, within BACOVA_04281at 169.364 kb on + strand, within BACOVA_04281at 169.365 kb on + strand, within BACOVA_04281at 169.415 kb on + strand, within BACOVA_04281at 169.418 kb on - strand, within BACOVA_04281at 169.418 kb on - strand, within BACOVA_04281

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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166,226 + BACOVA_04278 0.84 +0.2
166,259 - BACOVA_04278 0.88 -0.4
166,327 - -0.3
166,376 + +0.3
166,383 - -0.4
166,420 + -1.2
166,421 - +0.8
166,421 - -0.5
166,421 - -0.0
166,426 - -0.3
166,435 - +0.2
166,471 + -0.7
166,472 - -1.6
166,472 - +0.8
166,512 - BACOVA_04279 0.11 -1.5
166,534 + BACOVA_04279 0.15 -0.9
166,537 + BACOVA_04279 0.15 +0.3
166,544 - BACOVA_04279 0.16 +0.6
166,563 + BACOVA_04279 0.20 +0.6
166,572 + BACOVA_04279 0.21 +0.3
166,629 + BACOVA_04279 0.31 +0.6
166,630 - BACOVA_04279 0.31 +0.4
166,722 + BACOVA_04279 0.47 +0.5
166,723 - BACOVA_04279 0.47 +0.6
166,723 - BACOVA_04279 0.47 +0.6
166,723 - BACOVA_04279 0.47 -0.3
166,724 + BACOVA_04279 0.47 -0.8
166,734 + BACOVA_04279 0.49 +1.8
166,752 - BACOVA_04279 0.52 +0.5
166,752 - BACOVA_04279 0.52 -0.5
166,752 - BACOVA_04279 0.52 +0.6
166,752 - BACOVA_04279 0.52 +0.4
166,752 - BACOVA_04279 0.52 +0.4
166,775 - BACOVA_04279 0.56 -0.2
166,829 + BACOVA_04279 0.65 +0.7
166,918 + BACOVA_04279 0.81 +0.8
166,919 - BACOVA_04279 0.81 -0.0
166,982 - -1.3
167,019 - +0.5
167,028 + +1.2
167,041 - +0.4
167,096 + +1.3
167,097 - -0.4
167,098 + +0.3
167,098 + -0.4
167,098 + +0.1
167,106 + -1.6
167,129 + +0.3
167,139 + +0.5
167,150 + +0.4
167,156 - +0.6
167,156 - -1.9
167,244 + +0.4
167,244 + -1.6
167,244 + +0.3
167,245 - +0.4
167,245 - -2.0
167,245 - -0.1
167,266 + -0.5
167,274 - BACOVA_04280 0.10 +0.3
167,351 + BACOVA_04280 0.16 -0.8
167,355 + BACOVA_04280 0.16 -0.8
167,356 - BACOVA_04280 0.16 -0.9
167,356 - BACOVA_04280 0.16 -1.6
167,356 - BACOVA_04280 0.16 -0.3
167,426 + BACOVA_04280 0.22 +0.2
167,427 - BACOVA_04280 0.22 +0.8
167,444 + BACOVA_04280 0.23 -0.4
167,448 + BACOVA_04280 0.23 -0.2
167,449 - BACOVA_04280 0.23 -0.8
167,468 + BACOVA_04280 0.25 +0.8
167,481 - BACOVA_04280 0.26 +1.0
167,484 - BACOVA_04280 0.26 -0.4
167,484 - BACOVA_04280 0.26 -0.5
167,491 + BACOVA_04280 0.26 +0.3
167,491 + BACOVA_04280 0.26 +1.4
167,492 - BACOVA_04280 0.26 +0.4
167,497 + BACOVA_04280 0.27 -0.0
167,508 + BACOVA_04280 0.28 +0.7
167,510 + BACOVA_04280 0.28 -0.7
167,511 - BACOVA_04280 0.28 -0.2
167,537 + BACOVA_04280 0.30 +0.6
167,537 + BACOVA_04280 0.30 +0.1
167,553 - BACOVA_04280 0.31 -1.3
167,559 - BACOVA_04280 0.31 +0.8
167,599 + BACOVA_04280 0.34 +1.6
167,599 + BACOVA_04280 0.34 -1.3
167,599 + BACOVA_04280 0.34 +0.8
167,600 - BACOVA_04280 0.34 +0.7
167,600 - BACOVA_04280 0.34 +2.8
167,600 - BACOVA_04280 0.34 -0.3
167,601 + BACOVA_04280 0.34 +0.6
167,601 + BACOVA_04280 0.34 +1.0
167,602 - BACOVA_04280 0.34 -0.2
167,603 + BACOVA_04280 0.34 -0.8
167,603 + BACOVA_04280 0.34 -1.9
167,627 - BACOVA_04280 0.36 +0.1
167,627 - BACOVA_04280 0.36 -0.6
167,627 - BACOVA_04280 0.36 -0.2
167,632 + BACOVA_04280 0.37 +0.0
167,632 + BACOVA_04280 0.37 +0.0
167,668 - BACOVA_04280 0.39 +1.4
167,669 + BACOVA_04280 0.39 -1.6
167,669 + BACOVA_04280 0.39 -0.7
167,670 - BACOVA_04280 0.39 -1.9
167,690 + BACOVA_04280 0.41 -1.3
167,690 + BACOVA_04280 0.41 +0.7
167,690 + BACOVA_04280 0.41 +0.0
167,691 - BACOVA_04280 0.41 -1.4
167,695 - BACOVA_04280 0.41 -2.2
167,712 - BACOVA_04280 0.42 -0.6
167,745 - BACOVA_04280 0.45 -0.0
167,745 - BACOVA_04280 0.45 -0.2
167,837 + BACOVA_04280 0.51 -0.1
167,838 - BACOVA_04280 0.52 -0.6
167,871 + BACOVA_04280 0.54 -4.0
167,872 - BACOVA_04280 0.54 +1.0
167,898 + BACOVA_04280 0.56 -0.4
167,898 + BACOVA_04280 0.56 -0.4
167,899 - BACOVA_04280 0.56 +0.3
167,901 + BACOVA_04280 0.56 +0.1
167,901 + BACOVA_04280 0.56 -0.5
167,905 + BACOVA_04280 0.56 -0.7
167,905 + BACOVA_04280 0.56 -0.4
167,905 + BACOVA_04280 0.56 -0.5
168,030 - BACOVA_04280 0.66 +0.8
168,042 - BACOVA_04280 0.66 +0.3
168,044 - BACOVA_04280 0.67 -0.1
168,080 + BACOVA_04280 0.69 -1.3
168,172 - BACOVA_04280 0.76 -0.4
168,182 + BACOVA_04280 0.77 -0.3
168,182 + BACOVA_04280 0.77 -1.1
168,182 + BACOVA_04280 0.77 -0.3
168,240 + BACOVA_04280 0.81 +0.5
168,291 - BACOVA_04280 0.84 -0.0
168,312 - BACOVA_04280 0.86 +0.0
168,312 - BACOVA_04280 0.86 -0.8
168,312 - BACOVA_04280 0.86 -0.5
168,317 - BACOVA_04280 0.86 -1.5
168,317 - BACOVA_04280 0.86 +0.7
168,317 - BACOVA_04280 0.86 +0.4
168,332 + BACOVA_04280 0.87 -1.6
168,396 - +0.4
168,400 + +0.7
168,404 + +0.5
168,405 - -0.0
168,500 - +1.3
168,501 + +0.7
168,518 - +1.0
168,641 + -1.3
168,656 + +0.0
168,686 + +0.8
168,692 - +1.8
168,695 + -0.4
168,696 - +0.3
168,696 - +0.4
168,696 - -0.3
168,699 + +0.4
168,714 + +0.0
168,715 - -0.1
168,722 - -1.7
168,722 - +0.4
168,740 - -1.7
168,755 + -0.3
168,776 + -0.7
168,808 + -0.7
168,872 - -1.4
168,885 + -0.1
168,907 + -0.1
168,908 - -0.9
168,908 - -0.7
168,908 - +0.1
168,908 - -1.2
168,909 + -0.4
168,929 + -0.2
168,960 + -1.4
168,961 - -0.5
168,974 + +0.0
168,980 + +1.8
169,009 - -0.8
169,038 - -0.4
169,078 + BACOVA_04281 0.12 -1.3
169,081 + BACOVA_04281 0.12 +0.6
169,081 + BACOVA_04281 0.12 -1.2
169,081 + BACOVA_04281 0.12 -0.8
169,081 + BACOVA_04281 0.12 -0.2
169,081 + BACOVA_04281 0.12 -1.4
169,082 - BACOVA_04281 0.12 -0.5
169,082 - BACOVA_04281 0.12 -2.4
169,082 - BACOVA_04281 0.12 +0.9
169,082 - BACOVA_04281 0.12 -0.7
169,084 - BACOVA_04281 0.12 -0.3
169,140 - BACOVA_04281 0.16 -1.2
169,265 + BACOVA_04281 0.24 -0.2
169,275 + BACOVA_04281 0.24 -0.6
169,338 + BACOVA_04281 0.28 +1.2
169,338 + BACOVA_04281 0.28 +0.8
169,364 + BACOVA_04281 0.30 -1.0
169,364 + BACOVA_04281 0.30 +0.4
169,365 + BACOVA_04281 0.30 +0.8
169,415 + BACOVA_04281 0.33 +0.2
169,418 - BACOVA_04281 0.33 +0.3
169,418 - BACOVA_04281 0.33 -1.0

Or see this region's nucleotide sequence