Strain Fitness in Bacteroides ovatus ATCC 8483 around BACOVA_04224

Experiment: D-Mannose 10 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntBACOVA_04222 and BACOVA_04223 are separated by 80 nucleotidesBACOVA_04223 and BACOVA_04224 are separated by 8 nucleotidesBACOVA_04224 and BACOVA_04225 are separated by 161 nucleotidesBACOVA_04225 and BACOVA_04226 overlap by 23 nucleotides BACOVA_04222: BACOVA_04222 - Beta-eliminating lyase, at 102,604 to 103,977 _04222 BACOVA_04223: BACOVA_04223 - hypothetical protein, at 104,058 to 104,360 _04223 BACOVA_04224: BACOVA_04224 - hypothetical protein, at 104,369 to 104,593 _04224 BACOVA_04225: BACOVA_04225 - hypothetical protein, at 104,755 to 105,387 _04225 BACOVA_04226: BACOVA_04226 - gliding motility-associated protein GldE, at 105,365 to 106,720 _04226 Position (kb) 104 105Strain fitness (log2 ratio) -1 0 1 2at 103.389 kb on + strand, within BACOVA_04222at 103.427 kb on - strand, within BACOVA_04222at 103.466 kb on - strand, within BACOVA_04222at 103.474 kb on + strand, within BACOVA_04222at 103.475 kb on - strand, within BACOVA_04222at 103.560 kb on + strand, within BACOVA_04222at 103.573 kb on + strand, within BACOVA_04222at 103.573 kb on + strand, within BACOVA_04222at 103.574 kb on - strand, within BACOVA_04222at 103.751 kb on - strand, within BACOVA_04222at 103.752 kb on + strand, within BACOVA_04222at 103.808 kb on + strand, within BACOVA_04222at 103.808 kb on + strand, within BACOVA_04222at 103.809 kb on - strand, within BACOVA_04222at 103.835 kb on + strand, within BACOVA_04222at 103.836 kb on - strand, within BACOVA_04222at 103.838 kb on - strand, within BACOVA_04222at 103.840 kb on - strandat 103.863 kb on - strandat 103.884 kb on - strandat 103.884 kb on - strandat 103.886 kb on - strandat 103.920 kb on + strandat 103.920 kb on + strandat 103.921 kb on - strandat 104.027 kb on - strandat 104.029 kb on - strandat 104.032 kb on - strandat 104.032 kb on - strandat 104.043 kb on + strandat 104.044 kb on - strandat 104.044 kb on - strandat 104.072 kb on + strandat 104.072 kb on + strandat 104.077 kb on + strandat 104.080 kb on + strandat 104.104 kb on - strand, within BACOVA_04223at 104.137 kb on + strand, within BACOVA_04223at 104.137 kb on + strand, within BACOVA_04223at 104.143 kb on - strand, within BACOVA_04223at 104.144 kb on + strand, within BACOVA_04223at 104.145 kb on - strand, within BACOVA_04223at 104.145 kb on - strand, within BACOVA_04223at 104.167 kb on + strand, within BACOVA_04223at 104.167 kb on + strand, within BACOVA_04223at 104.167 kb on + strand, within BACOVA_04223at 104.168 kb on - strand, within BACOVA_04223at 104.168 kb on - strand, within BACOVA_04223at 104.168 kb on - strand, within BACOVA_04223at 104.168 kb on - strand, within BACOVA_04223at 104.169 kb on + strand, within BACOVA_04223at 104.176 kb on + strand, within BACOVA_04223at 104.177 kb on - strand, within BACOVA_04223at 104.177 kb on - strand, within BACOVA_04223at 104.180 kb on + strand, within BACOVA_04223at 104.201 kb on - strand, within BACOVA_04223at 104.266 kb on + strand, within BACOVA_04223at 104.267 kb on - strand, within BACOVA_04223at 104.302 kb on - strand, within BACOVA_04223at 104.303 kb on + strand, within BACOVA_04223at 104.303 kb on + strand, within BACOVA_04223at 104.304 kb on - strand, within BACOVA_04223at 104.335 kb on + strandat 104.335 kb on + strandat 104.358 kb on + strandat 104.359 kb on - strandat 104.363 kb on - strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.366 kb on + strandat 104.367 kb on - strandat 104.389 kb on + strandat 104.390 kb on - strandat 104.390 kb on - strandat 104.390 kb on - strandat 104.445 kb on + strand, within BACOVA_04224at 104.445 kb on + strand, within BACOVA_04224at 104.445 kb on + strand, within BACOVA_04224at 104.446 kb on - strand, within BACOVA_04224at 104.446 kb on - strand, within BACOVA_04224at 104.451 kb on + strand, within BACOVA_04224at 104.451 kb on + strand, within BACOVA_04224at 104.460 kb on + strand, within BACOVA_04224at 104.472 kb on - strand, within BACOVA_04224at 104.578 kb on + strandat 104.634 kb on + strandat 104.699 kb on - strandat 104.714 kb on + strandat 104.715 kb on - strandat 105.527 kb on - strand, within BACOVA_04226at 105.539 kb on - strand, within BACOVA_04226at 105.539 kb on - strand, within BACOVA_04226

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C)
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103,389 + BACOVA_04222 0.57 +0.2
103,427 - BACOVA_04222 0.60 -0.4
103,466 - BACOVA_04222 0.63 -0.5
103,474 + BACOVA_04222 0.63 -0.6
103,475 - BACOVA_04222 0.63 -1.0
103,560 + BACOVA_04222 0.70 +0.6
103,573 + BACOVA_04222 0.71 -0.7
103,573 + BACOVA_04222 0.71 -0.5
103,574 - BACOVA_04222 0.71 +0.8
103,751 - BACOVA_04222 0.83 +0.4
103,752 + BACOVA_04222 0.84 -1.4
103,808 + BACOVA_04222 0.88 -1.1
103,808 + BACOVA_04222 0.88 +0.2
103,809 - BACOVA_04222 0.88 +0.3
103,835 + BACOVA_04222 0.90 +0.4
103,836 - BACOVA_04222 0.90 -0.2
103,838 - BACOVA_04222 0.90 -0.3
103,840 - -0.2
103,863 - -0.6
103,884 - -0.8
103,884 - -0.5
103,886 - +1.3
103,920 + +0.9
103,920 + +1.2
103,921 - -0.2
104,027 - +1.0
104,029 - -0.9
104,032 - +1.2
104,032 - -0.4
104,043 + -0.8
104,044 - +0.1
104,044 - +0.5
104,072 + +0.0
104,072 + +0.5
104,077 + +0.1
104,080 + +1.8
104,104 - BACOVA_04223 0.15 +0.3
104,137 + BACOVA_04223 0.26 +0.3
104,137 + BACOVA_04223 0.26 -0.2
104,143 - BACOVA_04223 0.28 -1.0
104,144 + BACOVA_04223 0.28 +0.1
104,145 - BACOVA_04223 0.29 +1.1
104,145 - BACOVA_04223 0.29 -0.6
104,167 + BACOVA_04223 0.36 +0.2
104,167 + BACOVA_04223 0.36 -1.1
104,167 + BACOVA_04223 0.36 -1.1
104,168 - BACOVA_04223 0.36 +0.4
104,168 - BACOVA_04223 0.36 +0.2
104,168 - BACOVA_04223 0.36 -1.2
104,168 - BACOVA_04223 0.36 -0.9
104,169 + BACOVA_04223 0.37 +0.5
104,176 + BACOVA_04223 0.39 -1.2
104,177 - BACOVA_04223 0.39 +0.6
104,177 - BACOVA_04223 0.39 -0.8
104,180 + BACOVA_04223 0.40 +0.8
104,201 - BACOVA_04223 0.47 +0.6
104,266 + BACOVA_04223 0.69 +0.4
104,267 - BACOVA_04223 0.69 +0.2
104,302 - BACOVA_04223 0.81 +0.2
104,303 + BACOVA_04223 0.81 +0.2
104,303 + BACOVA_04223 0.81 +0.5
104,304 - BACOVA_04223 0.81 +0.2
104,335 + +0.1
104,335 + -0.2
104,358 + -0.1
104,359 - +0.3
104,363 - -1.1
104,366 + +0.1
104,366 + -0.1
104,366 + -0.5
104,366 + +0.3
104,366 + +0.3
104,366 + +0.0
104,366 + +0.6
104,367 - +0.4
104,389 + +0.1
104,390 - -0.4
104,390 - -0.4
104,390 - -0.2
104,445 + BACOVA_04224 0.34 -0.1
104,445 + BACOVA_04224 0.34 -1.4
104,445 + BACOVA_04224 0.34 +0.5
104,446 - BACOVA_04224 0.34 -0.5
104,446 - BACOVA_04224 0.34 -1.2
104,451 + BACOVA_04224 0.36 +0.9
104,451 + BACOVA_04224 0.36 -1.1
104,460 + BACOVA_04224 0.40 -0.7
104,472 - BACOVA_04224 0.46 +1.2
104,578 + -0.8
104,634 + -0.5
104,699 - -0.1
104,714 + -0.7
104,715 - +1.0
105,527 - BACOVA_04226 0.12 +0.6
105,539 - BACOVA_04226 0.13 +0.2
105,539 - BACOVA_04226 0.13 -0.5

Or see this region's nucleotide sequence