Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03770 and BACOVA_03771 are separated by 157 nucleotides BACOVA_03771 and BACOVA_03772 are separated by 66 nucleotides BACOVA_03772 and BACOVA_03773 are separated by 128 nucleotides
BACOVA_03770: BACOVA_03770 - Ppx/GppA phosphatase family protein, at 109,942 to 110,865
_03770
BACOVA_03771: BACOVA_03771 - acetyltransferase, GNAT family, at 111,023 to 111,670
_03771
BACOVA_03772: BACOVA_03772 - hypothetical protein, at 111,737 to 112,201
_03772
BACOVA_03773: BACOVA_03773 - hypothetical protein, at 112,330 to 114,669
_03773
Position (kb) 111
112
113 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 110.755 kb on - strand, within BACOVA_03770 at 110.778 kb on + strand at 110.783 kb on + strand at 110.787 kb on + strand at 110.811 kb on + strand at 110.812 kb on - strand at 110.813 kb on + strand at 110.814 kb on - strand at 110.814 kb on - strand at 110.822 kb on + strand at 110.823 kb on - strand at 110.875 kb on - strand at 110.876 kb on + strand at 110.876 kb on + strand at 110.878 kb on + strand at 110.878 kb on + strand at 110.893 kb on + strand at 110.893 kb on + strand at 110.899 kb on + strand at 110.900 kb on - strand at 110.911 kb on + strand at 110.941 kb on - strand at 110.942 kb on + strand at 110.947 kb on + strand at 110.947 kb on + strand at 110.947 kb on + strand at 110.948 kb on - strand at 110.994 kb on + strand at 110.995 kb on - strand at 110.995 kb on - strand at 111.006 kb on + strand at 111.010 kb on + strand at 111.010 kb on + strand at 111.022 kb on + strand at 111.023 kb on - strand at 111.031 kb on - strand at 111.104 kb on + strand, within BACOVA_03771 at 111.128 kb on + strand, within BACOVA_03771 at 111.142 kb on + strand, within BACOVA_03771 at 111.142 kb on + strand, within BACOVA_03771 at 111.143 kb on - strand, within BACOVA_03771 at 111.143 kb on - strand, within BACOVA_03771 at 111.157 kb on + strand, within BACOVA_03771 at 111.157 kb on + strand, within BACOVA_03771 at 111.180 kb on + strand, within BACOVA_03771 at 111.193 kb on + strand, within BACOVA_03771 at 111.193 kb on + strand, within BACOVA_03771 at 111.194 kb on - strand, within BACOVA_03771 at 111.196 kb on + strand, within BACOVA_03771 at 111.197 kb on - strand, within BACOVA_03771 at 111.377 kb on - strand, within BACOVA_03771 at 111.382 kb on - strand, within BACOVA_03771 at 111.401 kb on + strand, within BACOVA_03771 at 111.460 kb on + strand, within BACOVA_03771 at 111.460 kb on + strand, within BACOVA_03771 at 111.460 kb on + strand, within BACOVA_03771 at 111.461 kb on - strand, within BACOVA_03771 at 111.461 kb on - strand, within BACOVA_03771 at 111.464 kb on + strand, within BACOVA_03771 at 111.464 kb on + strand, within BACOVA_03771 at 111.465 kb on - strand, within BACOVA_03771 at 111.465 kb on - strand, within BACOVA_03771 at 111.470 kb on - strand, within BACOVA_03771 at 111.494 kb on + strand, within BACOVA_03771 at 111.527 kb on + strand, within BACOVA_03771 at 111.530 kb on - strand, within BACOVA_03771 at 111.531 kb on + strand, within BACOVA_03771 at 111.532 kb on - strand, within BACOVA_03771 at 111.532 kb on - strand, within BACOVA_03771 at 111.532 kb on - strand, within BACOVA_03771 at 111.545 kb on + strand, within BACOVA_03771 at 111.569 kb on - strand, within BACOVA_03771 at 111.645 kb on + strand at 111.645 kb on + strand at 111.648 kb on + strand at 111.694 kb on + strand at 111.705 kb on + strand at 111.709 kb on + strand at 111.739 kb on - strand at 111.782 kb on + strand at 111.783 kb on - strand at 111.785 kb on - strand, within BACOVA_03772 at 111.785 kb on - strand, within BACOVA_03772 at 111.833 kb on - strand, within BACOVA_03772 at 111.893 kb on + strand, within BACOVA_03772 at 111.894 kb on - strand, within BACOVA_03772 at 111.894 kb on - strand, within BACOVA_03772 at 111.894 kb on - strand, within BACOVA_03772 at 111.894 kb on - strand, within BACOVA_03772 at 111.919 kb on + strand, within BACOVA_03772 at 111.922 kb on + strand, within BACOVA_03772 at 111.946 kb on + strand, within BACOVA_03772 at 111.947 kb on - strand, within BACOVA_03772 at 111.961 kb on + strand, within BACOVA_03772 at 111.961 kb on + strand, within BACOVA_03772 at 111.961 kb on + strand, within BACOVA_03772 at 111.971 kb on + strand, within BACOVA_03772 at 111.994 kb on + strand, within BACOVA_03772 at 111.994 kb on + strand, within BACOVA_03772 at 111.994 kb on + strand, within BACOVA_03772 at 111.995 kb on - strand, within BACOVA_03772 at 112.098 kb on + strand, within BACOVA_03772 at 112.098 kb on + strand, within BACOVA_03772 at 112.098 kb on + strand, within BACOVA_03772 at 112.099 kb on - strand, within BACOVA_03772 at 112.104 kb on + strand, within BACOVA_03772 at 112.105 kb on - strand, within BACOVA_03772 at 112.116 kb on + strand, within BACOVA_03772 at 112.117 kb on - strand, within BACOVA_03772 at 112.120 kb on - strand, within BACOVA_03772 at 112.125 kb on + strand, within BACOVA_03772 at 112.126 kb on - strand, within BACOVA_03772 at 112.210 kb on + strand at 112.210 kb on + strand at 112.211 kb on - strand at 112.222 kb on - strand at 112.223 kb on + strand at 112.224 kb on - strand at 112.230 kb on + strand at 112.243 kb on + strand at 112.264 kb on + strand at 112.265 kb on - strand at 112.267 kb on + strand at 112.279 kb on + strand at 112.280 kb on - strand at 112.289 kb on - strand at 112.298 kb on + strand at 112.301 kb on - strand at 112.301 kb on - strand at 112.331 kb on + strand at 112.331 kb on + strand at 112.347 kb on + strand at 112.348 kb on - strand at 112.350 kb on + strand at 112.357 kb on + strand at 112.363 kb on - strand at 112.368 kb on - strand at 112.419 kb on - strand at 112.430 kb on - strand at 112.446 kb on + strand at 112.485 kb on + strand at 112.486 kb on - strand at 112.602 kb on - strand, within BACOVA_03773 at 112.618 kb on + strand, within BACOVA_03773 at 112.619 kb on - strand, within BACOVA_03773 at 112.664 kb on - strand, within BACOVA_03773 at 112.680 kb on + strand, within BACOVA_03773 at 112.680 kb on + strand, within BACOVA_03773 at 112.680 kb on + strand, within BACOVA_03773 at 112.681 kb on - strand, within BACOVA_03773 at 112.681 kb on - strand, within BACOVA_03773 at 112.682 kb on + strand, within BACOVA_03773 at 112.683 kb on - strand, within BACOVA_03773 at 112.684 kb on + strand, within BACOVA_03773 at 112.685 kb on - strand, within BACOVA_03773 at 112.701 kb on + strand, within BACOVA_03773 at 112.704 kb on + strand, within BACOVA_03773 at 112.705 kb on - strand, within BACOVA_03773 at 112.705 kb on - strand, within BACOVA_03773 at 112.705 kb on - strand, within BACOVA_03773 at 112.725 kb on + strand, within BACOVA_03773 at 112.735 kb on + strand, within BACOVA_03773 at 112.735 kb on + strand, within BACOVA_03773 at 112.743 kb on + strand, within BACOVA_03773 at 112.753 kb on + strand, within BACOVA_03773 at 112.753 kb on + strand, within BACOVA_03773 at 112.753 kb on + strand, within BACOVA_03773 at 112.754 kb on - strand, within BACOVA_03773 at 112.754 kb on - strand, within BACOVA_03773 at 112.757 kb on + strand, within BACOVA_03773 at 112.757 kb on + strand, within BACOVA_03773 at 112.758 kb on - strand, within BACOVA_03773 at 112.758 kb on - strand, within BACOVA_03773 at 112.758 kb on - strand, within BACOVA_03773 at 112.774 kb on + strand, within BACOVA_03773 at 112.774 kb on + strand, within BACOVA_03773 at 112.775 kb on - strand, within BACOVA_03773 at 112.809 kb on - strand, within BACOVA_03773 at 112.825 kb on + strand, within BACOVA_03773 at 112.825 kb on + strand, within BACOVA_03773 at 112.826 kb on - strand, within BACOVA_03773 at 112.826 kb on - strand, within BACOVA_03773 at 112.826 kb on - strand, within BACOVA_03773 at 112.848 kb on + strand, within BACOVA_03773 at 112.858 kb on - strand, within BACOVA_03773 at 112.890 kb on + strand, within BACOVA_03773 at 112.890 kb on + strand, within BACOVA_03773 at 112.890 kb on + strand, within BACOVA_03773 at 112.909 kb on + strand, within BACOVA_03773 at 112.927 kb on + strand, within BACOVA_03773 at 112.927 kb on + strand, within BACOVA_03773 at 112.968 kb on - strand, within BACOVA_03773 at 112.968 kb on - strand, within BACOVA_03773 at 112.989 kb on + strand, within BACOVA_03773 at 113.022 kb on + strand, within BACOVA_03773 at 113.023 kb on - strand, within BACOVA_03773 at 113.054 kb on + strand, within BACOVA_03773 at 113.055 kb on - strand, within BACOVA_03773 at 113.078 kb on + strand, within BACOVA_03773 at 113.139 kb on + strand, within BACOVA_03773 at 113.140 kb on - strand, within BACOVA_03773 at 113.163 kb on + strand, within BACOVA_03773 at 113.164 kb on - strand, within BACOVA_03773 at 113.189 kb on + strand, within BACOVA_03773 at 113.190 kb on - strand, within BACOVA_03773 at 113.190 kb on - strand, within BACOVA_03773
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 110,755 - BACOVA_03770 0.88 -0.4 110,778 + -1.1 110,783 + +0.3 110,787 + -0.7 110,811 + +0.1 110,812 - -1.2 110,813 + -0.9 110,814 - -1.4 110,814 - +0.8 110,822 + +0.0 110,823 - +0.1 110,875 - -0.4 110,876 + -0.5 110,876 + +0.3 110,878 + +0.9 110,878 + -0.4 110,893 + +0.2 110,893 + +0.2 110,899 + -0.8 110,900 - -0.1 110,911 + -2.1 110,941 - +1.1 110,942 + -1.4 110,947 + -0.4 110,947 + +0.1 110,947 + -0.8 110,948 - +0.8 110,994 + -0.0 110,995 - +0.4 110,995 - -0.2 111,006 + +0.2 111,010 + -0.8 111,010 + +0.4 111,022 + +0.9 111,023 - -1.8 111,031 - -0.4 111,104 + BACOVA_03771 0.12 -0.1 111,128 + BACOVA_03771 0.16 +0.5 111,142 + BACOVA_03771 0.18 -0.2 111,142 + BACOVA_03771 0.18 -0.1 111,143 - BACOVA_03771 0.19 -0.1 111,143 - BACOVA_03771 0.19 +0.4 111,157 + BACOVA_03771 0.21 +0.3 111,157 + BACOVA_03771 0.21 +1.1 111,180 + BACOVA_03771 0.24 -1.1 111,193 + BACOVA_03771 0.26 +0.3 111,193 + BACOVA_03771 0.26 -0.5 111,194 - BACOVA_03771 0.26 -0.1 111,196 + BACOVA_03771 0.27 -1.0 111,197 - BACOVA_03771 0.27 -0.2 111,377 - BACOVA_03771 0.55 +0.0 111,382 - BACOVA_03771 0.55 +0.7 111,401 + BACOVA_03771 0.58 +0.3 111,460 + BACOVA_03771 0.67 -0.5 111,460 + BACOVA_03771 0.67 -0.5 111,460 + BACOVA_03771 0.67 -0.9 111,461 - BACOVA_03771 0.68 +0.4 111,461 - BACOVA_03771 0.68 +1.3 111,464 + BACOVA_03771 0.68 +0.1 111,464 + BACOVA_03771 0.68 +0.0 111,465 - BACOVA_03771 0.68 +1.5 111,465 - BACOVA_03771 0.68 +0.6 111,470 - BACOVA_03771 0.69 -0.8 111,494 + BACOVA_03771 0.73 -1.2 111,527 + BACOVA_03771 0.78 -0.0 111,530 - BACOVA_03771 0.78 +0.8 111,531 + BACOVA_03771 0.78 +0.1 111,532 - BACOVA_03771 0.79 +0.6 111,532 - BACOVA_03771 0.79 +1.5 111,532 - BACOVA_03771 0.79 -1.4 111,545 + BACOVA_03771 0.81 +0.2 111,569 - BACOVA_03771 0.84 +0.6 111,645 + -1.5 111,645 + -0.3 111,648 + -0.1 111,694 + -0.1 111,705 + -0.5 111,709 + -1.2 111,739 - +0.6 111,782 + -0.6 111,783 - -1.4 111,785 - BACOVA_03772 0.10 +0.8 111,785 - BACOVA_03772 0.10 +0.3 111,833 - BACOVA_03772 0.21 -1.0 111,893 + BACOVA_03772 0.34 -0.6 111,894 - BACOVA_03772 0.34 +0.2 111,894 - BACOVA_03772 0.34 +0.3 111,894 - BACOVA_03772 0.34 -0.4 111,894 - BACOVA_03772 0.34 +0.6 111,919 + BACOVA_03772 0.39 +0.4 111,922 + BACOVA_03772 0.40 -0.2 111,946 + BACOVA_03772 0.45 -0.5 111,947 - BACOVA_03772 0.45 -0.5 111,961 + BACOVA_03772 0.48 +0.8 111,961 + BACOVA_03772 0.48 +0.5 111,961 + BACOVA_03772 0.48 +0.1 111,971 + BACOVA_03772 0.50 +0.9 111,994 + BACOVA_03772 0.55 -0.3 111,994 + BACOVA_03772 0.55 +0.8 111,994 + BACOVA_03772 0.55 -0.8 111,995 - BACOVA_03772 0.55 +1.0 112,098 + BACOVA_03772 0.78 +0.1 112,098 + BACOVA_03772 0.78 -0.3 112,098 + BACOVA_03772 0.78 +0.9 112,099 - BACOVA_03772 0.78 -0.1 112,104 + BACOVA_03772 0.79 +0.8 112,105 - BACOVA_03772 0.79 +1.0 112,116 + BACOVA_03772 0.82 +0.7 112,117 - BACOVA_03772 0.82 -1.0 112,120 - BACOVA_03772 0.82 +0.5 112,125 + BACOVA_03772 0.83 +0.5 112,126 - BACOVA_03772 0.84 -0.1 112,210 + -0.6 112,210 + -1.9 112,211 - -0.7 112,222 - +0.1 112,223 + +0.4 112,224 - -1.0 112,230 + +0.4 112,243 + +0.3 112,264 + -1.0 112,265 - -1.7 112,267 + -0.3 112,279 + +0.5 112,280 - -3.2 112,289 - +0.2 112,298 + -1.2 112,301 - +0.6 112,301 - +1.0 112,331 + +1.1 112,331 + -0.4 112,347 + -0.5 112,348 - +1.5 112,350 + +0.1 112,357 + +1.2 112,363 - -0.9 112,368 - +0.5 112,419 - +1.0 112,430 - -0.4 112,446 + +0.4 112,485 + -2.4 112,486 - +0.4 112,602 - BACOVA_03773 0.12 -0.6 112,618 + BACOVA_03773 0.12 +0.2 112,619 - BACOVA_03773 0.12 -0.0 112,664 - BACOVA_03773 0.14 -0.9 112,680 + BACOVA_03773 0.15 -0.7 112,680 + BACOVA_03773 0.15 -0.2 112,680 + BACOVA_03773 0.15 +0.9 112,681 - BACOVA_03773 0.15 -0.6 112,681 - BACOVA_03773 0.15 -1.0 112,682 + BACOVA_03773 0.15 -0.1 112,683 - BACOVA_03773 0.15 -0.1 112,684 + BACOVA_03773 0.15 -0.8 112,685 - BACOVA_03773 0.15 +1.4 112,701 + BACOVA_03773 0.16 +0.5 112,704 + BACOVA_03773 0.16 -1.8 112,705 - BACOVA_03773 0.16 -0.8 112,705 - BACOVA_03773 0.16 +0.9 112,705 - BACOVA_03773 0.16 -0.0 112,725 + BACOVA_03773 0.17 -0.7 112,735 + BACOVA_03773 0.17 +0.5 112,735 + BACOVA_03773 0.17 +1.1 112,743 + BACOVA_03773 0.18 -0.5 112,753 + BACOVA_03773 0.18 -1.5 112,753 + BACOVA_03773 0.18 +1.1 112,753 + BACOVA_03773 0.18 +0.6 112,754 - BACOVA_03773 0.18 +2.1 112,754 - BACOVA_03773 0.18 +0.2 112,757 + BACOVA_03773 0.18 +1.2 112,757 + BACOVA_03773 0.18 +0.1 112,758 - BACOVA_03773 0.18 -0.7 112,758 - BACOVA_03773 0.18 +0.5 112,758 - BACOVA_03773 0.18 +0.7 112,774 + BACOVA_03773 0.19 -0.3 112,774 + BACOVA_03773 0.19 +0.6 112,775 - BACOVA_03773 0.19 +0.8 112,809 - BACOVA_03773 0.20 +0.3 112,825 + BACOVA_03773 0.21 +1.0 112,825 + BACOVA_03773 0.21 +0.4 112,826 - BACOVA_03773 0.21 +1.8 112,826 - BACOVA_03773 0.21 -0.0 112,826 - BACOVA_03773 0.21 +0.2 112,848 + BACOVA_03773 0.22 +0.6 112,858 - BACOVA_03773 0.23 -0.5 112,890 + BACOVA_03773 0.24 +0.4 112,890 + BACOVA_03773 0.24 -1.0 112,890 + BACOVA_03773 0.24 -0.2 112,909 + BACOVA_03773 0.25 +0.8 112,927 + BACOVA_03773 0.26 +0.2 112,927 + BACOVA_03773 0.26 +1.4 112,968 - BACOVA_03773 0.27 +1.1 112,968 - BACOVA_03773 0.27 -0.6 112,989 + BACOVA_03773 0.28 -0.0 113,022 + BACOVA_03773 0.30 +1.4 113,023 - BACOVA_03773 0.30 -1.2 113,054 + BACOVA_03773 0.31 +1.0 113,055 - BACOVA_03773 0.31 -0.5 113,078 + BACOVA_03773 0.32 +1.0 113,139 + BACOVA_03773 0.35 +0.7 113,140 - BACOVA_03773 0.35 +1.0 113,163 + BACOVA_03773 0.36 +1.6 113,164 - BACOVA_03773 0.36 -1.4 113,189 + BACOVA_03773 0.37 -0.1 113,190 - BACOVA_03773 0.37 -0.7 113,190 - BACOVA_03773 0.37 +1.1
Or see this region's nucleotide sequence