Experiment: D-Mannose 10 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt BACOVA_03059 and BACOVA_03060 are separated by 364 nucleotides BACOVA_03060 and BACOVA_03061 are separated by 14 nucleotides BACOVA_03061 and BACOVA_03062 are separated by 91 nucleotides
BACOVA_03059: BACOVA_03059 - VirE N-terminal domain protein, at 128,042 to 130,165
_03059
BACOVA_03060: BACOVA_03060 - transcriptional regulator, AraC family, at 130,530 to 131,402
_03060
BACOVA_03061: BACOVA_03061 - hypothetical protein, at 131,417 to 131,581
_03061
BACOVA_03062: BACOVA_03062 - SusD family protein, at 131,673 to 133,511
_03062
Position (kb) 130
131
132 Strain fitness (log2 ratio) -2
-1
0
1
2 at 129.567 kb on - strand, within BACOVA_03059 at 129.593 kb on - strand, within BACOVA_03059 at 129.593 kb on - strand, within BACOVA_03059 at 129.613 kb on + strand, within BACOVA_03059 at 129.614 kb on - strand, within BACOVA_03059 at 129.685 kb on + strand, within BACOVA_03059 at 129.688 kb on + strand, within BACOVA_03059 at 129.778 kb on + strand, within BACOVA_03059 at 129.803 kb on - strand, within BACOVA_03059 at 129.805 kb on + strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.809 kb on - strand, within BACOVA_03059 at 129.817 kb on + strand, within BACOVA_03059 at 129.827 kb on + strand, within BACOVA_03059 at 129.863 kb on + strand, within BACOVA_03059 at 129.907 kb on - strand, within BACOVA_03059 at 129.968 kb on + strand at 129.969 kb on - strand at 129.973 kb on + strand at 129.981 kb on + strand at 130.035 kb on + strand at 130.036 kb on - strand at 130.067 kb on - strand at 130.070 kb on - strand at 130.070 kb on - strand at 130.109 kb on - strand at 130.224 kb on - strand at 130.242 kb on - strand at 130.327 kb on + strand at 130.332 kb on + strand at 130.334 kb on + strand at 130.351 kb on + strand at 130.428 kb on - strand at 130.430 kb on - strand at 130.430 kb on - strand at 130.482 kb on - strand at 130.484 kb on + strand at 130.502 kb on + strand at 130.502 kb on + strand at 130.503 kb on - strand at 130.511 kb on + strand at 130.518 kb on - strand at 130.529 kb on + strand at 130.530 kb on - strand at 130.550 kb on - strand at 130.584 kb on + strand at 130.585 kb on - strand at 130.613 kb on + strand at 130.613 kb on + strand at 130.614 kb on - strand at 130.614 kb on - strand at 130.615 kb on + strand at 130.615 kb on + strand at 130.616 kb on - strand at 130.629 kb on - strand, within BACOVA_03060 at 130.695 kb on - strand, within BACOVA_03060 at 130.719 kb on - strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.740 kb on + strand, within BACOVA_03060 at 130.741 kb on - strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.742 kb on + strand, within BACOVA_03060 at 130.743 kb on - strand, within BACOVA_03060 at 130.745 kb on + strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.746 kb on - strand, within BACOVA_03060 at 130.748 kb on + strand, within BACOVA_03060 at 130.840 kb on - strand, within BACOVA_03060 at 130.857 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.859 kb on - strand, within BACOVA_03060 at 130.884 kb on - strand, within BACOVA_03060 at 130.970 kb on + strand, within BACOVA_03060 at 130.971 kb on - strand, within BACOVA_03060 at 130.979 kb on + strand, within BACOVA_03060 at 131.048 kb on + strand, within BACOVA_03060 at 131.049 kb on - strand, within BACOVA_03060 at 131.109 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.202 kb on - strand, within BACOVA_03060 at 131.215 kb on + strand, within BACOVA_03060 at 131.337 kb on + strand at 131.405 kb on - strand at 131.422 kb on + strand at 131.425 kb on + strand at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.434 kb on + strand, within BACOVA_03061 at 131.445 kb on + strand, within BACOVA_03061 at 131.454 kb on + strand, within BACOVA_03061 at 131.455 kb on - strand, within BACOVA_03061 at 131.469 kb on + strand, within BACOVA_03061 at 131.501 kb on + strand, within BACOVA_03061 at 131.503 kb on + strand, within BACOVA_03061 at 131.504 kb on - strand, within BACOVA_03061 at 131.507 kb on + strand, within BACOVA_03061 at 131.509 kb on + strand, within BACOVA_03061 at 131.510 kb on - strand, within BACOVA_03061 at 131.562 kb on + strand, within BACOVA_03061 at 131.569 kb on + strand at 131.575 kb on + strand at 131.576 kb on - strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.579 kb on + strand at 131.588 kb on + strand at 131.588 kb on + strand at 131.609 kb on + strand at 131.612 kb on + strand at 131.613 kb on - strand at 131.614 kb on + strand at 131.617 kb on + strand at 131.618 kb on - strand at 131.622 kb on + strand at 131.623 kb on - strand at 131.654 kb on + strand at 131.655 kb on - strand at 131.655 kb on - strand at 131.674 kb on + strand at 131.675 kb on - strand at 131.675 kb on - strand at 131.720 kb on + strand at 131.727 kb on - strand at 131.742 kb on + strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.743 kb on - strand at 131.749 kb on + strand at 131.772 kb on + strand at 131.849 kb on - strand at 131.881 kb on - strand, within BACOVA_03062 at 131.881 kb on - strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.897 kb on + strand, within BACOVA_03062 at 131.909 kb on + strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.910 kb on - strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.948 kb on + strand, within BACOVA_03062 at 131.949 kb on - strand, within BACOVA_03062 at 132.007 kb on + strand, within BACOVA_03062 at 132.008 kb on - strand, within BACOVA_03062 at 132.030 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.076 kb on - strand, within BACOVA_03062 at 132.080 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.083 kb on - strand, within BACOVA_03062 at 132.095 kb on + strand, within BACOVA_03062 at 132.102 kb on - strand, within BACOVA_03062 at 132.115 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.118 kb on + strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.119 kb on - strand, within BACOVA_03062 at 132.121 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.157 kb on + strand, within BACOVA_03062 at 132.158 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.177 kb on - strand, within BACOVA_03062 at 132.178 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.184 kb on + strand, within BACOVA_03062 at 132.204 kb on - strand, within BACOVA_03062 at 132.212 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.215 kb on + strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.216 kb on - strand, within BACOVA_03062 at 132.217 kb on + strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.218 kb on - strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.219 kb on + strand, within BACOVA_03062 at 132.303 kb on - strand, within BACOVA_03062 at 132.364 kb on + strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.365 kb on - strand, within BACOVA_03062 at 132.373 kb on - strand, within BACOVA_03062 at 132.394 kb on + strand, within BACOVA_03062
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mM (C) remove 129,567 - BACOVA_03059 0.72 -0.8 129,593 - BACOVA_03059 0.73 +0.1 129,593 - BACOVA_03059 0.73 +0.0 129,613 + BACOVA_03059 0.74 +0.1 129,614 - BACOVA_03059 0.74 -0.3 129,685 + BACOVA_03059 0.77 +0.1 129,688 + BACOVA_03059 0.77 +0.1 129,778 + BACOVA_03059 0.82 -0.4 129,803 - BACOVA_03059 0.83 -1.8 129,805 + BACOVA_03059 0.83 +1.1 129,809 - BACOVA_03059 0.83 +0.0 129,809 - BACOVA_03059 0.83 -0.5 129,809 - BACOVA_03059 0.83 +0.8 129,817 + BACOVA_03059 0.84 +0.2 129,827 + BACOVA_03059 0.84 -0.6 129,863 + BACOVA_03059 0.86 -0.2 129,907 - BACOVA_03059 0.88 +0.4 129,968 + -0.2 129,969 - +1.5 129,973 + +0.8 129,981 + -1.5 130,035 + -0.4 130,036 - +0.7 130,067 - -1.1 130,070 - +0.2 130,070 - -0.5 130,109 - -0.4 130,224 - +0.4 130,242 - +0.3 130,327 + -0.3 130,332 + +0.3 130,334 + +1.1 130,351 + +0.0 130,428 - -0.3 130,430 - -0.3 130,430 - +0.3 130,482 - -0.6 130,484 + -0.7 130,502 + +0.3 130,502 + -0.5 130,503 - -1.8 130,511 + +0.3 130,518 - -0.0 130,529 + +0.2 130,530 - -0.9 130,550 - -0.6 130,584 + +0.0 130,585 - +0.7 130,613 + -0.0 130,613 + +0.1 130,614 - -1.2 130,614 - -0.2 130,615 + +0.1 130,615 + -0.8 130,616 - -0.5 130,629 - BACOVA_03060 0.11 -0.7 130,695 - BACOVA_03060 0.19 -1.0 130,719 - BACOVA_03060 0.22 -0.0 130,740 + BACOVA_03060 0.24 -0.6 130,740 + BACOVA_03060 0.24 -0.1 130,741 - BACOVA_03060 0.24 +1.1 130,742 + BACOVA_03060 0.24 +2.0 130,742 + BACOVA_03060 0.24 -0.7 130,743 - BACOVA_03060 0.24 +0.1 130,745 + BACOVA_03060 0.25 +0.5 130,746 - BACOVA_03060 0.25 +0.1 130,746 - BACOVA_03060 0.25 -1.2 130,748 + BACOVA_03060 0.25 +0.5 130,840 - BACOVA_03060 0.36 -0.1 130,857 - BACOVA_03060 0.37 -1.3 130,859 - BACOVA_03060 0.38 +0.9 130,859 - BACOVA_03060 0.38 -0.9 130,859 - BACOVA_03060 0.38 -0.3 130,859 - BACOVA_03060 0.38 -0.7 130,884 - BACOVA_03060 0.41 +0.2 130,970 + BACOVA_03060 0.50 +0.1 130,971 - BACOVA_03060 0.51 -0.3 130,979 + BACOVA_03060 0.51 -0.6 131,048 + BACOVA_03060 0.59 +0.8 131,049 - BACOVA_03060 0.59 +1.3 131,109 - BACOVA_03060 0.66 -0.1 131,202 - BACOVA_03060 0.77 -0.5 131,202 - BACOVA_03060 0.77 +0.5 131,215 + BACOVA_03060 0.78 +0.7 131,337 + -1.2 131,405 - +0.0 131,422 + -2.2 131,425 + +0.5 131,434 + BACOVA_03061 0.10 -0.8 131,434 + BACOVA_03061 0.10 -0.2 131,434 + BACOVA_03061 0.10 +0.5 131,445 + BACOVA_03061 0.17 -0.6 131,454 + BACOVA_03061 0.22 -0.2 131,455 - BACOVA_03061 0.23 -0.5 131,469 + BACOVA_03061 0.32 +0.7 131,501 + BACOVA_03061 0.51 -0.8 131,503 + BACOVA_03061 0.52 -0.0 131,504 - BACOVA_03061 0.53 -1.0 131,507 + BACOVA_03061 0.55 +0.8 131,509 + BACOVA_03061 0.56 -0.9 131,510 - BACOVA_03061 0.56 -0.5 131,562 + BACOVA_03061 0.88 -0.1 131,569 + -0.2 131,575 + +1.7 131,576 - -0.9 131,579 + -0.6 131,579 + +0.4 131,579 + +0.3 131,588 + +0.3 131,588 + -0.4 131,609 + +0.2 131,612 + +0.9 131,613 - +1.5 131,614 + -0.8 131,617 + -0.6 131,618 - -0.2 131,622 + -0.3 131,623 - +0.6 131,654 + -1.2 131,655 - +1.4 131,655 - +0.1 131,674 + -0.2 131,675 - +0.1 131,675 - -0.6 131,720 + +0.6 131,727 - -2.4 131,742 + +0.5 131,743 - +0.5 131,743 - -0.1 131,743 - -0.4 131,749 + -0.8 131,772 + -1.1 131,849 - -0.4 131,881 - BACOVA_03062 0.11 +0.3 131,881 - BACOVA_03062 0.11 -0.9 131,897 + BACOVA_03062 0.12 -0.1 131,897 + BACOVA_03062 0.12 +0.1 131,897 + BACOVA_03062 0.12 -0.8 131,909 + BACOVA_03062 0.13 +0.3 131,910 - BACOVA_03062 0.13 -0.2 131,910 - BACOVA_03062 0.13 -0.2 131,948 + BACOVA_03062 0.15 +0.1 131,948 + BACOVA_03062 0.15 -0.1 131,948 + BACOVA_03062 0.15 +0.3 131,949 - BACOVA_03062 0.15 -0.4 132,007 + BACOVA_03062 0.18 +0.3 132,008 - BACOVA_03062 0.18 +0.1 132,030 - BACOVA_03062 0.19 -0.6 132,076 - BACOVA_03062 0.22 +0.3 132,076 - BACOVA_03062 0.22 -0.3 132,080 - BACOVA_03062 0.22 -1.2 132,083 - BACOVA_03062 0.22 +0.4 132,083 - BACOVA_03062 0.22 -0.2 132,095 + BACOVA_03062 0.23 -0.4 132,102 - BACOVA_03062 0.23 -0.8 132,115 + BACOVA_03062 0.24 -0.3 132,118 + BACOVA_03062 0.24 +0.1 132,118 + BACOVA_03062 0.24 +0.5 132,119 - BACOVA_03062 0.24 -0.3 132,119 - BACOVA_03062 0.24 -1.1 132,121 + BACOVA_03062 0.24 +0.3 132,157 + BACOVA_03062 0.26 -0.5 132,157 + BACOVA_03062 0.26 -0.6 132,157 + BACOVA_03062 0.26 +0.2 132,158 - BACOVA_03062 0.26 +0.8 132,177 - BACOVA_03062 0.27 +0.2 132,177 - BACOVA_03062 0.27 -0.4 132,178 + BACOVA_03062 0.27 +0.7 132,184 + BACOVA_03062 0.28 -0.6 132,184 + BACOVA_03062 0.28 -0.2 132,204 - BACOVA_03062 0.29 +0.6 132,212 + BACOVA_03062 0.29 -0.1 132,215 + BACOVA_03062 0.29 -0.2 132,215 + BACOVA_03062 0.29 +0.3 132,216 - BACOVA_03062 0.30 -0.4 132,216 - BACOVA_03062 0.30 -0.9 132,217 + BACOVA_03062 0.30 -0.8 132,218 - BACOVA_03062 0.30 -0.2 132,218 - BACOVA_03062 0.30 -0.2 132,219 + BACOVA_03062 0.30 -1.1 132,219 + BACOVA_03062 0.30 +0.4 132,303 - BACOVA_03062 0.34 -0.8 132,364 + BACOVA_03062 0.38 +1.2 132,365 - BACOVA_03062 0.38 +0.1 132,365 - BACOVA_03062 0.38 -0.0 132,365 - BACOVA_03062 0.38 -0.3 132,365 - BACOVA_03062 0.38 +0.2 132,365 - BACOVA_03062 0.38 -0.1 132,373 - BACOVA_03062 0.38 -0.7 132,394 + BACOVA_03062 0.39 +0.5
Or see this region's nucleotide sequence